SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5788

Length: 2740 nt

UniGene Fasta

>sp_v3.0_unigene5788
TGCAACGCAGCTGAAATGTTGATTTCTATGTAAGCGAAAGCCCGCGCACAGTGTCAAATCCGCTTTGAACCCTGCGGAACGTCAAATACGCTTTTGCTTTGGCAGCATACAGAGGGAAAACATGGGCGACGACGGCGCTGCTTCTCCCTTATCGCCCCAGCTAGCCTTGAAAGGCAATGCCTACCTGCAAGTCGTCATCCCAAAGCGCATACAAATGTTCGAGCGAATTCAGGCAGAGCAACAGCTTCACCGTCTACAGATCGGAGGAGAACCTATAAGGATTACTCTTCCAGATGGTCAAGTCAAGGAGGGGAAAAGATGGATTACTTCACCTATGGATATTGCTAAGGAAATTTCAAAAGGATTGGCTGCATCAGCGTTAATATCAGAGGTGAATGGAACTCTTTGGGACCTGTTGAGGCCTCTAGAGGGAGACTGTCAATTGAAATTGTTCACATTTGACACCAATGAAGGACGTGATACATTTTGGCATTCTAGTGCTCACATCCTTGGGGAGTCTCTTGAAATGGAGTATGGCTGCAAACTATGTATTGGACCCTGTACAACTCGAGGAGAGGGATTTTATTACGACGCCTTCTATGACGATGTTACCTTGAATGATGACGAGTTCAAAAAGATTCATGCTCAGGCTACAAAAGCTGCTATGGAAAAACAACCATTTGAACGGATAGAAGTATCAAGGCAGCAGGCCCTTGAAATGTTTGCTGATAATCCTTTCAAGGTTGAAATTATAAAGGAACTGCCTGAGGATAAAACAATAACAGTGTACAGATGTGGACCTCTGGTAGATCTTTGTCGTGGGCCACACATCCCCAATACATCTCATGTGAAAGCCTTTGCTTGTCTCAAGGCTTCAGCATCTTATTGGAGAGGCAAATCAGATCGTGAAAGTCTCCAAAGGGTCTACGGAATTTCATACCCAGATTCCAAAAAGCTGAAAGAATATCTTACGCAGTTAGAAGAAGCTAAGAAACGTGATCACAGGGTTGTGGGGCTGAATCAAGAACTTTTCTTTTTCCATCCACTTAGCCCTGGTAGTTGCTTCTTTTTACCTCATGGTACAAGAATCTACAATACATTGATGAATTTTATACGCAATGAATACAGGAAGAGGGGTTACCATGAGGTGATAACTCCAAACATGTTCAATATGCAACTCTGGGAAAAATCGGGGCATGCAGCTAATTACAAAGAAAACATGTTTGTGTTTGAGGTTGAGAAACAGGAATTTGGGCTTAAGCCTATGAATTGTCCAGGGCACTGTTTGATGTTTGAACATAGAGTGCGATCATACAGAGAATTACCATTGCGTTTGGCTGATTTTGGGGTTTTGCATCGCAATGAACTTAGTGGTGCGTTGACTGGGCTGACTCGTGTTCGGCGATTTCAACAGGATGATGCACATATCTTTTGCAAGGAATCTCAGATCAAAGATGAGGTTGGAGGTGTGCTGGATTTCTTACAATATGCATATGAGATATTCGGCTTTACATTTGAACTAGAGTTGTCAACTATGCCTGAAAAACACTTGGGAGATCTAGAAACGTGGCAAAGAGCTGAGGCAGCATTAGCTGAAGCCTTGAATGCATTTGGAAAGCCATGGCAGATTAATGAAGGTGATGGTGCTTTTTATGGGCCCAAGATTGACATCACCGTTTTTGATGCTTTGAAAAGAAAATTCCAGTGTGCGACAATTCAGCTTGATTTTCAGCTTCCTATTCGATTTGATTTATCTTACTCAGCTGAGGATGAAGCAAAGAGGGAAAGGCCTGTCATGATACACCGGGCCATACTTGGTTCTGTTGAGCGCATGCTTGCAATACTCTTGGAGCATTATGCAGGGAAATGGCCTTTCTGGCTCAGTCCTCGGCAGGCAATTGTATGCCCGGTGTCAGAGAAATCTTCAGAGTATGCATTGAGAGTTCGTGATCAGATTCATCAAGCTGGTTATTATGTTGATGTTGATACGTCAGACAGAAAGATTCAGAAGAAGGTCCGGGAGGCACAGCTAGCACAATACAACTATATTTTAGTTGTTGGTGAAGAGGAAGCAAACACTGGACAGGTAAGTGTTCGCATCCGAGATAAATCAACACATGAAGTAAGGAGTATGGATGAACTTCTTAAATTGTTTAGAGAGGAGATTGAAGCGTTTCATTAGCTGAAGGCAGGGTAAGCTGCTTAGAAAATTATAAAATTTCAGGGTTAAAATTCTCCTCGGTCTTTATTTCTCAGCTAATTTTGTTGCCCTGAATTGGAAAGAAATTTGATATCATATTTGGAAGTGAAGAAATGCACAATGTAGTGTAAAAACCTGTGTTCTCTGATCAGGAAATGTATATCAAGGTTCATGATTTGACCTGAACCAAGTCAAAGTTCTTATTGATGAAATTTTGTGTATTGATGAGTAAAGTGACCACAGAAATATAAAAAATATTTTCCGATATTTTTTCTTGAATTGGCTAATAAGGGACGCCATTCTTGTTTAGTCTCTGATATTTTTCTTTCTGGTAGAGGACCCCCAAAATCATTGATTTTCAAATTCGGCTGTATGTAATATGAAACTGTGAGATTTCTGACAATGCTATCCTTGATTTTCTGAATTTTCCGTTACTGTAATAATGTTTTTGCAGTTTAAATCGACCAGCATTACACATCTGGGCCTTGGAAATTCTTCAAAACGCAAGTTTTTAAAAATTATATATGAAACGTTTTTGAC

Ace file of the UniGene sp_v3.0_unigene5788

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	threonyl-tRNA synthetase [Arabidopsis thaliana]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Chromosome chr19 scaffold_66, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00033369001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	threonine-tRNA ligase activity	GO:0004829	Molecular Function	-
Sma3	threonyl-tRNA aminoacylation	GO:0006435	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Beta-grasp domain	IPR012675	-	-
Sma3	TGS	IPR004095	-	-
Sma3	Threonyl-tRNA synthetase, class IIa	IPR002320	-	-
Sma3		IPR018158	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G26830.1	Threonyl-tRNA synthetase chr5:9437351-9441568 FORWARD LENGTH=709	72%
RefSeq	Arabidopsis thaliana	NP_198035.2	threonyl-tRNA synthetase [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002311580.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACE7

Fln msg: your sequence is longer than subject: 687 - 215

Fln protein: MGDDGAASPLSPQLALKGNAYLQVVIPKRIQMFERIQAEQQLHRLQIGGEPIRITLPDGQVKEGKRWITSPMDIAKEISKGLAASALISEVNGTLWDLLRPLEGDCQLKLFTFDTNEGRDTFWHSSAHILGESLEMEYGCKLCIGPCTTRGEGFYYDAFYDDVTLNDDEFKKIHAQATKAAMEKQPFERIEVSRQQALEMFADNPFKVEIIKELPEDKTITVYRCGPLVDLCRGPHIPNTSHVKAFACLKASASYWRGKSDRESLQRVYGISYPDSKKLKEYLTQLEEAKKRDHRVVGLNQELFFFHPLSPGSCFFLPHGTRIYNTLMNFIRNEYRKRGYHEVITPNMFNMQLWEKSGHAANYKENMFVFEVEKQEFGLKPMNCPGHCLMFEHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCKESQIKDEVGGVLDFLQYAYEIFGFTFELELSTMPEKHLGDLETWQRAEAALAEALNAFGKPWQINEGDGAFYGPKIDITVFDALKRKFQCATIQLDFQLPIRFDLSYSAEDEAKRERPVMIHRAILGSVERMLAILLEHYAGKWPFWLSPRQAIVCPVSEKSSEYALRVRDQIHQAGYYVDVDTSDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRIRDKSTHEVRSMDELLKLFREEIEAFH*

Protein Length: 688

Fln nts: TGCAACGCAGCTGAAATGTTGATTTCTATGTAAGCGAAAGCCCGCGCACAGTGTCAAATCCGCTTTGAACCCTGCGGAACGTCAAATACGCTTTTGCTTTGGCAGCATACAGAGGGAAAAC_-_ATGGGCGACGACGGCGCTGCTTCTCCCTTATCGCCCCAGCTAGCCTTGAAAGGCAATGCCTACCTGCAAGTCGTCATCCCAAAGCGCATACAAATGTTCGAGCGAATTCAGGCAGAGCAACAGCTTCACCGTCTACAGATCGGAGGAGAACCTATAAGGATTACTCTTCCAGATGGTCAAGTCAAGGAGGGGAAAAGATGGATTACTTCACCTATGGATATTGCTAAGGAAATTTCAAAAGGATTGGCTGCATCAGCGTTAATATCAGAGGTGAATGGAACTCTTTGGGACCTGTTGAGGCCTCTAGAGGGAGACTGTCAATTGAAATTGTTCACATTTGACACCAATGAAGGACGTGATACATTTTGGCATTCTAGTGCTCACATCCTTGGGGAGTCTCTTGAAATGGAGTATGGCTGCAAACTATGTATTGGACCCTGTACAACTCGAGGAGAGGGATTTTATTACGACGCCTTCTATGACGATGTTACCTTGAATGATGACGAGTTCAAAAAGATTCATGCTCAGGCTACAAAAGCTGCTATGGAAAAACAACCATTTGAACGGATAGAAGTATCAAGGCAGCAGGCCCTTGAAATGTTTGCTGATAATCCTTTCAAGGTTGAAATTATAAAGGAACTGCCTGAGGATAAAACAATAACAGTGTACAGATGTGGACCTCTGGTAGATCTTTGTCGTGGGCCACACATCCCCAATACATCTCATGTGAAAGCCTTTGCTTGTCTCAAGGCTTCAGCATCTTATTGGAGAGGCAAATCAGATCGTGAAAGTCTCCAAAGGGTCTACGGAATTTCATACCCAGATTCCAAAAAGCTGAAAGAATATCTTACGCAGTTAGAAGAAGCTAAGAAACGTGATCACAGGGTTGTGGGGCTGAATCAAGAACTTTTCTTTTTCCATCCACTTAGCCCTGGTAGTTGCTTCTTTTTACCTCATGGTACAAGAATCTACAATACATTGATGAATTTTATACGCAATGAATACAGGAAGAGGGGTTACCATGAGGTGATAACTCCAAACATGTTCAATATGCAACTCTGGGAAAAATCGGGGCATGCAGCTAATTACAAAGAAAACATGTTTGTGTTTGAGGTTGAGAAACAGGAATTTGGGCTTAAGCCTATGAATTGTCCAGGGCACTGTTTGATGTTTGAACATAGAGTGCGATCATACAGAGAATTACCATTGCGTTTGGCTGATTTTGGGGTTTTGCATCGCAATGAACTTAGTGGTGCGTTGACTGGGCTGACTCGTGTTCGGCGATTTCAACAGGATGATGCACATATCTTTTGCAAGGAATCTCAGATCAAAGATGAGGTTGGAGGTGTGCTGGATTTCTTACAATATGCATATGAGATATTCGGCTTTACATTTGAACTAGAGTTGTCAACTATGCCTGAAAAACACTTGGGAGATCTAGAAACGTGGCAAAGAGCTGAGGCAGCATTAGCTGAAGCCTTGAATGCATTTGGAAAGCCATGGCAGATTAATGAAGGTGATGGTGCTTTTTATGGGCCCAAGATTGACATCACCGTTTTTGATGCTTTGAAAAGAAAATTCCAGTGTGCGACAATTCAGCTTGATTTTCAGCTTCCTATTCGATTTGATTTATCTTACTCAGCTGAGGATGAAGCAAAGAGGGAAAGGCCTGTCATGATACACCGGGCCATACTTGGTTCTGTTGAGCGCATGCTTGCAATACTCTTGGAGCATTATGCAGGGAAATGGCCTTTCTGGCTCAGTCCTCGGCAGGCAATTGTATGCCCGGTGTCAGAGAAATCTTCAGAGTATGCATTGAGAGTTCGTGATCAGATTCATCAAGCTGGTTATTATGTTGATGTTGATACGTCAGACAGAAAGATTCAGAAGAAGGTCCGGGAGGCACAGCTAGCACAATACAACTATATTTTAGTTGTTGGTGAAGAGGAAGCAAACACTGGACAGGTAAGTGTTCGCATCCGAGATAAATCAACACATGAAGTAAGGAGTATGGATGAACTTCTTAAATTGTTTAGAGAGGAGATTGAAGCGTTTCATTAG___CTGAAGGCAGGGTAAGCTGCTTAGAAAATTATAAAATTTCAGGGTTAAAATTCTCCTCGGTCTTTATTTCTCAGCTAATTTTGTTGCCCTGAATTGGAAAGAAATTTGATATCATATTTGGAAGTGAAGAAATGCACAATGTAGTGTAAAAACCTGTGTTCTCTGATCAGGAAATGTATATCAAGGTTCATGATTTGACCTGAACCAAGTCAAAGTTCTTATTGATGAAATTTTGTGTATTGATGAGTAAAGTGACCACAGAAATATAAAAAATATTTTCCGATATTTTTTCTTGAATTGGCTAATAAGGGACGCCATTCTTGTTTAGTCTCTGATATTTTTCTTTCTGGTAGAGGACCCCCAAAATCATTGATTTTCAAATTCGGCTGTATGTAATATGAAACTGTGAGATTTCTGACAATGCTATCCTTGATTTTCTGAATTTTCCGTTACTGTAATAATGTTTTTGCAGTTTAAATCGACCAGCATTACACATCTGGGCCTTGGAAATTCTTCAAAACGCAAGTTTTTAAAAATTATATATGAAACGTTTTTGAC

Fln Alignment:

Contig5788___MPEKHLGDLETWQRXXXXXXXXXXXFGKPWQINEGDGAFYGPKIDITVFDALKRKFQCATIQLDFQLPIRFDLSYSAEDEAKRERPVMIHRAILGSVERMLAILLEHYAGKWPFWLSPRQAIVCPVSEKSSEYALRVRDQIHQAGYYVDVDTSDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRIRDKSTHEVRSMDELLKLFREEIEAFH
D5ACE7______________MPEKHLGDLETWQRAEAALTEALNAFGKPWQINEGDGAFYGPKIDITVFDALKRKFQCATIQLDFQLPIRFDLSYSTEDEAKRERPVMIHRAILGSVERMLAILLEHYAGKWPFWLSPRQAIVCPVSEKSSDYALRVRDQIHQAGYYVDVDTSDRKIQKKIREAQLAQYNYILVVGEEEANTGQVSVRIRDKSAHEVRSMDELLKLFREEIEAFH

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
702			87	12	0.992554
704		87		12	0.992554
750	12			87	0.992554
752	87		12		0.992554
753			12	87	0.992554
754	87		12		0.992554
763		12	87		0.992554
826	87		12		0.992554
841	75		25		1.0
940		66		33	1.0
975	85		14		0.993533
1017			14	85	0.993533
1226		12	87		0.992554
1544	87		12		0.992554
1660		25	75		0.996473
1698	75	25			0.996473
1746	20			80	0.995493
1749	80		20		0.995493
1750			20	80	0.995493
2407	15			84	1.0
2448		10		30	1.0
2468	81			18	0.999994
2532	30		69		1.0
2567		84		15	0.999986
2695	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain