SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5784

Length: 1853 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5784

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sugar isomerase domain-containing protein [Arabidopsis thaliana] emb\|CAB77589.1\| sugar-phosphate isomerase-like protein [Arabidopsis thaliana] dbj\|BAE99073.1\| sugar-phosphate isomerase - like protein [Arabidopsis thaliana] gb\|AEE79267.1\| sugar isomerase d	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	Gene names
Sma3	At3g54690; B1103G11.16; GSVIVT00028572001; Os02g0158300; OsI_05923; OsJ_05449; P0419H03.36; PHYPADRAFT_140682; PHYPADRAFT_149317; POPTRDRAFT_586827; POPTRDRAFT_715189; POPTRDRAFT_816080; RCOM_0500130; SIS; T5N23_50;

Source	GOs	Term	Type	Identity
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Sugar isomerase (SIS)	IPR001347	-	-
Sma3	Phosphosugar isomerase, KdsD/KpsF-type	IPR004800	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54690.1	Sugar isomerase (SIS) family protein chr3:20246586-20247810 FORWARD LENGTH=350	64%
RefSeq	Arabidopsis thaliana	NP_191029.1	sugar isomerase domain-containing protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002306858.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8E9

Fln msg:

Fln protein: MGALPEPMGNITKTNGVISAFGTTQMQKLFEEQKKHLDYFFSNVEYGQLQAFTQVLMDAKGVIFFTGVGKSGFVAQKITQTFVSTGTKAVFLSPTDALHGDIGIVGPNDVLVLFSKSGTTEELLRLVPCARAKGAYLVAVTSLRNSQLSNVCDMHVYLPVDRELCPFDLAPVTSTAIQMLFGDTVAIALMQAKNMTREQYALNHPAGRIGKRLIFRVQDVMKKHDELPLCKENDLIMDQLMELTSKGCGCLLVVDEECHLIGTFTDGDLRRALKSIREGVFKLTVGEMCNRNPRTIGPDAMAIEAMQKMESPPSPVQFLPIVNYDNVVIGIVTLHGLVSAGL*

Protein Length: 344

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCCCAATGTGAATAGGTCATTCTGAAAGAGACTAGGGATGAAATTCGTTGAATCAGAGATCCATTTACCGAGTCACTGACAACACGTTATGGAAGATCTCTGTCAAATGCATTACTTTTAATTGAATACCAATGAACAACCAATATGGAGCACGCCCAATTCAATGGTTGCCTCGAGCATGCATTCAACTCAATTCAACAGTCCATTTGTTTAGTTCTCTTTGAAATCCCCAATCTGAATCACACCCAATTCAATGGTTGCCTCGAGCATGCATTCAATTCAATTCAACAATCCATTTGTTTAGATCTCTTTGAAATCCCCTCATTCCGATCCAGTCCCAAGTAAAATCCCATTACCAGCGTACCCAAATCAGCGGATCTCGGAATCTGCACCCCACCGGTACCCTGAAACATGTCCTCATTGTAGGACAAGGTGCGCTTAACTAAAGGGCACTGCACGCTTAGACTGTAGGGCACTTTGAGCTTTCGCAGTTCTGCAACA_-_ATGGGGGCATTGCCTGAACCAATGGGCAACATCACAAAGACCAATGGAGTTATCTCTGCATTTGGCACCACCCAAATGCAAAAACTATTTGAGGAGCAAAAGAAGCACCTTGATTATTTCTTCTCCAATGTTGAATATGGCCAATTACAGGCCTTCACTCAAGTTCTCATGGATGCCAAGGGAGTCATATTCTTCACAGGAGTGGGCAAAAGTGGGTTTGTTGCACAGAAAATAACACAGACATTTGTTTCAACAGGCACAAAGGCTGTTTTCCTGTCACCCACAGATGCCCTCCATGGTGACATTGGCATAGTTGGGCCCAATGATGTGCTTGTTCTGTTCAGTAAGAGTGGTACTACAGAAGAGCTTCTAAGGCTTGTTCCATGTGCCAGAGCCAAGGGTGCATACTTGGTAGCTGTAACCTCACTAAGAAATTCTCAACTTAGTAATGTGTGTGATATGCATGTGTATCTGCCAGTGGATAGAGAGCTCTGCCCATTTGATCTGGCCCCTGTTACTTCCACAGCCATACAGATGCTCTTTGGGGACACTGTGGCTATAGCCTTGATGCAAGCAAAGAATATGACGAGAGAACAGTATGCTCTCAATCATCCTGCTGGTCGGATCGGTAAAAGGCTCATCTTCAGGGTGCAGGATGTGATGAAGAAGCATGATGAATTACCTCTGTGTAAGGAAAATGACCTAATAATGGATCAGCTTATGGAGCTGACTAGTAAAGGATGTGGTTGTCTGCTAGTTGTTGATGAAGAATGCCACCTCATTGGGACTTTTACTGATGGAGACTTGCGTCGAGCCCTCAAATCTATTAGGGAGGGGGTATTCAAGCTCACCGTGGGAGAGATGTGCAATAGGAACCCAAGAACTATTGGACCTGATGCAATGGCAATAGAGGCCATGCAAAAGATGGAGTCTCCACCATCACCTGTACAATTTTTGCCTATTGTCAATTATGACAATGTCGTCATTGGAATTGTCACCTTGCATGGATTAGTTTCAGCTGGTCTATAA___ACTTGCTTGCAGAAAATAATGCAGCAGTGTAGTTTGCAGATGGCCTATTTTTTATTCTTTGCAAGTTTTTCTAGTGTTCCTATGACAGCATCCTATATTAGCACAGTCAGGGTGAATCATTCATTTTTTGTTTTAATGGATTAGGCATTCAATCATTCATTTTGAATCTCGATTCATGTAATTCCATATCTATTGTTTACGAGTTTATATCTTACGATGATATGTAGCTCTTCCTATTTGAAGCAGTGGTTTCTGGAGGCAAGGTGGATAAAATTTATCAATATCCAAGTTTCAAG

Fln Alignment:

Contig5784___MGALPEPMGNITKTNGVISAFGTTQMQKLFEEQKKHLDYFFSNVEYGQLQAFTQVLMDAKGVIFFTGVGKSGFVAQKITQTFVSTGTKAVFLSPTDALHGDIGIVGPNDVLVLFSKSGTTEELLRLVPCARAKGAYLVAVTSLRNSQLSNVCDMHVYLPVDRELCPFDLAPVTSTAIQMLFGDTVAIALMQAKNMTREQYALNHPAGRIGKRLIFRVQDVMKKHDELPLCKENDLIMDQLMELTSKGCGCLLVVDEECHLIGTFTDGDLRRALKSIREGVFKLTVGEMCNRNPRTIGPDAMAIEAMQKMESPPSPVQFLPIVNYDNVVIGIVTLHGLVSAGL
D5A8E9______________MGALPEPMDSITKDNGINSEFGTLQMQKLFEEQRKHLDYFFSNVEYAQLQAFTQVLMAAKGVIFFTGVGKSGFVAQKITQTFVSTGTKAVFLSPTDALHGDIGIVGPNDVLVLFSKSGTTEELLRLVPCARAKGAYMVAVTSLRNSQLSNVCDMHVYLPLDRELCPFDLAPVTSTAIQMLFGDTVAIALMQAKKLTREQYALNHPAGRIGKRLIFRVQDVMKRHDELPLCKENDLIMDQLMELTSKGCGCLLVVDEECHLIGTFTDGDLRRALKSIREGVFKLTVGEMCNRNPRTIGPDAMAIEAMQKMESPPSPVQFLPIVNNDNVVIGIVTLHGLVSAGL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
940	10		90		0.90298
1027		10		90	0.90298
1077		88		11	0.923564
1111	83			16	0.994512
1125	14		85		0.993533
1127	85		14		0.993533
1158			75	25	0.996473
1334		16		83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
300	315	ATTCA ATTCA ATTCA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain