SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5760

Length: 1958 nt

UniGene Fasta

>sp_v3.0_unigene5760
AATGTCTGCTTAGCAGTGGTATCAACGCTTAGTAGTACGCGGGGTAGAAGAAGCAATACCGTCAATCCAAAGAATTTAACACGCCTCAAACATTCTTCAATATATATCTGTAATACTCTATTACAATGGGGGTATTACAATCAATTCAATCCTGCTCTCATTTCCAAAGGGTTCGTTCGATTCCCGTCCGAAGAAACAGGCTTGGAAGCAAGTGAAATGCATAATAGTGGTTGAACGCTTTCAAGTCGTTGATTCATCTAGTAGAAGATATAGAGAGATTGACAATATAATTGACATCTGGCATCAGCAGAATGAATGTGAAGTGGCTTTTGCTTGCAGTCATCTTTATCACTTTGTCCTATCTGGTTCGGGAGTGTTCAGCTCTGCCATTGCCAGTGGGGATCAAATACCGCTATAGCTCAAGCGCCTACTTGACCCAAGATGAATACTGGTTTTCTCAGAGACTGGACCACTATTCTCCCACGGACCATCGCCAGTTTAACCAAAGGTATTATGAGTTCCTTGATTACTTTCAGGCACCTGATGGACCAATATTTTTAAAAGTCTGTGGTGAATATCCTTGTGATGGCATTACGAATGACTATATGGCAGTTTTGGCAAAGAAGTTCGGTGCTGCTATTGTTTCCCTTGAGCATAGATACTATGGAAAGAGCTCTCCATTCAAAGAATTGACGACACATAATCTACAATATCTTTCTTCTAAGCAAGCACTTTTTGACTTGGCTATGTTTCGTAACTATTACCAGGAATTGACAAACAAAAAGCAAAATCTGTCCAACTACGAGAACTCTTGGTTTGTTTTTGGCGTGTCATACCCAGGGGCCCTTAGTGCATGGTTCCGCCTGAAGTTTCCTCACCTTACTTGTGGAAGCCTTGCAAGCTCAGCTGTTGTTCTAGCTATTTACAACTTCACAGATTTTGACAGACAGATCGGGGAGTCAGCAGGGCCTGCCTGCAAAAAGGCTCTGCAAGAAGTCACAAGGCTTGCTGAGGAGGGTTTATCTACTAGTGCAAATGCTGTAAAGTCTTTGTTTGGTGCAGAAAAGTTGAATAACGATGGCGACTTTCTTTACCTATTGGCAGATGCTGCAGTGATGGCGTTTCAATATGGGAATCCCGATGTACTTTGCTCTCCTCTTGTTAAAGCAAATTCATCAGGACAAGATTTGATGGTTGCTTATGCAGATTATGTAAAAAATTATATATCTGATGAAAGTGTTGAAAGTTACGGCCAACAGTTCCTGAAAAAAACAACTATTGAAGCTGATAGCAACGATGCACTCTGTTATGGTGGTATCAGGTTTGCACAGTATTTGCCTACTTTCAAGTTTCCCCATGACAGTATACGATCGTCGAAGGTGGATACAATGTGACCATGGCTGGATCTCTGTGAAAATGTTTTTGGCAAAGACATATATCCTGAAGTGGATATAACCAATGTGTACTATGGAGGCACTAGCATTGCAGGTTCAAAGATAATTTTTATGAATGGTTCACAAGATCCATGGAGACATGCATCCAAGCAAAAGTCATCTGATAATATGCCGTCGGTTCTGATCACATGTCATAATTGTGGTCATGGTGTTGACCTTCGAGGATGTCCTCAGTCACCTTCCAGAATCGAGGGGGACGCTTCTGATTGTGCTTCCCCAGACGTAGTGCACAAGGCAAGGCAACAAATGGTTGAGCATATTGACCTATGGCTTTCACAATGCCAAGATCAAGATCACGGTGGGATCTTTTTAGTGTAGAAAGTTGATTTTGATTGAATAATTTGTCTGAATGTGTAAATGAAGAATAATTATATACATTAGTTTTTAGTAGAAATAAAATGCATTCATGCTTACAGTACAAAATATTGACGTTTAATTAATGGTGTTGATGTATTTTGATTGAATAATTTGTTTGAATTTGTAAATAAAAAAATAATTATGTGC

Ace file of the UniGene sp_v3.0_unigene5760

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase S28 family protein [Arabidopsis thaliana] gb\|ABP88113.1\| At4g36190 [Arabidopsis thaliana] gb\|AEE86629.1\| Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S28	IPR008758	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36190.1	Serine carboxypeptidase S28 family protein chr4:17124052-17126643 FORWARD LENGTH=482	60%
RefSeq	Arabidopsis thaliana	NP_567998.3	Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002333330.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWA5

Fln msg:

Fln protein: MNVKWLLLAVIFITLSYLVRECSALPLPVGIKYRYSSSAYLTQDEYWFSQRLDHYSPTDHRQFNQRYYEFLDYFQAPDGPIFLKVCGEYPCDGITNDYMAVLAKKFGAAIVSLEHRYYGKSSPFKELTTHNLQYLSSKQALFDLAMFRNYYQELTNKKQNLSNYENSWFVFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAIYNFTDFDRQIGESAGPACKKALQEVTRLAEEGLSTSANAVKSLFGAEKLNNDGDFLYLLADAAVMAFQYGNPDVLCSPLVKANSSGQDLMVAYADYVKNYISDESVESYGQQFLKKTTIEADSNDALCYGGIRFAQYLPTFKFPHDSIRSSKVDTM*PWLDLCENVFGKDIYPEVDITNVYYGGTSIAGSKIIFMNGSQDPWRHASKQKSSDNMPSVLITCHNCGHGVDLRGCPQSPSRIEGDASDCASPDVVHKARQQMVEHIDLWLSQCQDQDHGGIFLV*

Protein Length: 488

Fln nts: AATGTCTGCTTAGCAGTGGTATCAACGCTTAGTAGTACGCGGGGTAGAAGAAGCAATACCGTCAATCCAAAGAATTTAACACGCCTCAAACATTCTTCAATATATATCTGTAATACTCTATTACAATGGGGGTATTACAATCAATTCAATCCTGCTCTCATTTCCAAAGGGTTCGTTCGATTCCCGTCCGAAGAAACAGGCTTGGAAGCAAGTGAAATGCATAATAGTGGTTGAACGCTTTCAAGTCGTTGATTCATCTAGTAGAAGATATAGAGAGATTGACAATATAATTGACATCTGGCATCAGCAGA_-_ATGAATGTGAAGTGGCTTTTGCTTGCAGTCATCTTTATCACTTTGTCCTATCTGGTTCGGGAGTGTTCAGCTCTGCCATTGCCAGTGGGGATCAAATACCGCTATAGCTCAAGCGCCTACTTGACCCAAGATGAATACTGGTTTTCTCAGAGACTGGACCACTATTCTCCCACGGACCATCGCCAGTTTAACCAAAGGTATTATGAGTTCCTTGATTACTTTCAGGCACCTGATGGACCAATATTTTTAAAAGTCTGTGGTGAATATCCTTGTGATGGCATTACGAATGACTATATGGCAGTTTTGGCAAAGAAGTTCGGTGCTGCTATTGTTTCCCTTGAGCATAGATACTATGGAAAGAGCTCTCCATTCAAAGAATTGACGACACATAATCTACAATATCTTTCTTCTAAGCAAGCACTTTTTGACTTGGCTATGTTTCGTAACTATTACCAGGAATTGACAAACAAAAAGCAAAATCTGTCCAACTACGAGAACTCTTGGTTTGTTTTTGGCGTGTCATACCCAGGGGCCCTTAGTGCATGGTTCCGCCTGAAGTTTCCTCACCTTACTTGTGGAAGCCTTGCAAGCTCAGCTGTTGTTCTAGCTATTTACAACTTCACAGATTTTGACAGACAGATCGGGGAGTCAGCAGGGCCTGCCTGCAAAAAGGCTCTGCAAGAAGTCACAAGGCTTGCTGAGGAGGGTTTATCTACTAGTGCAAATGCTGTAAAGTCTTTGTTTGGTGCAGAAAAGTTGAATAACGATGGCGACTTTCTTTACCTATTGGCAGATGCTGCAGTGATGGCGTTTCAATATGGGAATCCCGATGTACTTTGCTCTCCTCTTGTTAAAGCAAATTCATCAGGACAAGATTTGATGGTTGCTTATGCAGATTATGTAAAAAATTATATATCTGATGAAAGTGTTGAAAGTTACGGCCAACAGTTCCTGAAAAAAACAACTATTGAAGCTGATAGCAACGATGCACTCTGTTATGGTGGTATCAGGTTTGCACAGTATTTGCCTACTTTCAAGTTTCCCCATGACAGTATACGATCGTCGAAGGTGGATACAATGTGACCATGGCTGGATCTCTGTGAAAATGTTTTTGGCAAAGACATATATCCTGAAGTGGATATAACCAATGTGTACTATGGAGGCACTAGCATTGCAGGTTCAAAGATAATTTTTATGAATGGTTCACAAGATCCATGGAGACATGCATCCAAGCAAAAGTCATCTGATAATATGCCGTCGGTTCTGATCACATGTCATAATTGTGGTCATGGTGTTGACCTTCGAGGATGTCCTCAGTCACCTTCCAGAATCGAGGGGGACGCTTCTGATTGTGCTTCCCCAGACGTAGTGCACAAGGCAAGGCAACAAATGGTTGAGCATATTGACCTATGGCTTTCACAATGCCAAGATCAAGATCACGGTGGGATCTTTTTAGTGTAG___AAAGTTGATTTTGATTGAATAATTTGTCTGAATGTGTAAATGAAGAATAATTATATACATTAGTTTTTAGTAGAAATAAAATGCATTCATGCTTACAGTACAAAATATTGACGTTTAATTAATGGTGTTGATGTATTTTGATTGAATAATTTGTTTGAATTTGTAAATAAAAAAATAATTATGTGC

Fln Alignment:

Contig5760___MNVKWLLLAVIFITLSYLVRECSALPLPVGIKYRYSSSAYLTQDEYWFSQRLDHYSPTDHRQFNQRYYEFLDYFQAPDGPIFLKVCGEYPCDGITNDYMAVLAKKFGAAIVSLEHRYYGKSSPFKELTTHNLQYLSSKQALFDLAMFRNYYQELTNKKQNLSNYENSWFVFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAIYNFTDFDRQIGESAGPACKKALQEVTRLAEEGLSTSANAVKSLFGAEKLNNDGDFLYLLADAAVMAFQYGNPDVLCSPLVKANSSGQDLMVAYADYVKNYISDESVESYGQQFLKKTTIEADSNDALCYGGIRFAQYLPTFKF-----PHDSIRSSKVDTM*PWLDLCENVFGKDIYPEVDITNVYYGGTSIAGSKIIFMNGSQDPWRHASKQKSSDNMPSVLITCHNCGHGVDLRGCPQSPSRIEGDASDCASPDVVHKARQQMVEHIDLWLSQCQDQDHGGIFLV
A9NWA5______________MNVKWVLLAVILVIFSYVVLECSALPLPVGIKSGRSSSAYLTQDEYWFSQRLDHYSPTDHRQFNQRYYEFLDYFQAHDGPIFLKVCGEYSCDGIANDYMAVLAKKFGAAIVSLEHRYYGKSSPFKESTTHNLQYLSSKQALFDLASFRNYYQELTNKKQNLSNYDNSWFVFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAVYNFTDFDRQIGESAGPGCKKALQEVTRLAEQGLSTNANAVKSLFGAEKLKNDGDFLYLLADAAVTAFQYGYPDVLCSPLVEASSSGKDLMVAYADYVKNYSSDGGVESYGQQFLKNTTVDADSN-GVSNSRSWWYQVCTEFAYFQVAPSNDSVRSSKVDTK-YHLDLCENVFGKGIYPEVDITNLYYGGTSIAGSKIIFMNGSQDPWRHASKQKSSDNMPSYIITCHNCGHGTDLRGCPQSPSRIEGDASDCASPDVVHKARQQMVEHIDLWLSQCQDEDHGGIFVV

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
728	87		12		0.992554
968	10		90		0.90298
1101	12		87		0.992554
1105	87			12	0.992554
1125		88		11	0.923564
1301		33		66	0.997452
1302	66			33	0.997452
1303	66	33			0.997452
1304	33	33		33	0.997753
1305		66		33	0.997452
1306	33		33	33	0.997753
1434		83		16	0.994512
1473	88		11		0.923564
1475			88	11	0.923564
1898	10		90		0.90298
1899		10		90	0.90298
1900	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain