SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5756

Length: 2592 nt

UniGene Fasta

>sp_v3.0_unigene5756
CGTCGTGACCTTGGCTGTCACTCAGTTCGTCCCGACAATCCATTCATAGTTCTGAAGTCCAGCCCGGCGTCAACTTGGCTGAAAATCAATTTTTCTTCCGTTATTATGGGGTGTCATCAGTGAAACTGCTGGTTGGAAAAAAGTGCGAGAGAAGGCGCTGTAAACATGAAAGGAGGCACATTACAGATAGCGTGGCACGATTCCAAGCCTGTACTCACCCTCGATTTTCATCGTCTCACAGGATTCCTTGCAACCGGTGGTGCCGATTACGATATTAAGTTTTGGTCATTGTACCAAAGTGAAAGCAAGAAGGAGAACCCTAGGGCATCTTATGAAAGCAGTCTCTCATATCATAGTTCTGCTGTTAATGTGTTGCGTTTTTCTCCATCTGGAGAGCAGCTTGGTTCAGGGGCTGATGGTGGGGAGCTGCTTATATGGAAACTGCATTATACAGAGAATGGAAATTCTTGGAAAGTACTAAGGACACTCTCCTTCCATCGCAAGGATATTCTTGACATACAATGGTCACCAGATGGAGCGTTCTTGATTTCTGGTTCAGTTGATAATTCATGTATTATATGGGATGCTAACAAAGGTGCTGTGCAGCAGATTTTGGATTCTCATCTGCACTATGTTCAAGGTGTTGCATGGGATCCAGCAGGCCAGTATGTTGCTTCATTGAGTTCTGACAGGACTTGCAGGATTTATATCAACAAGCCGCAGGCTGCTAGAGCTAAGAGTCAGGAGAAGCTGAACTATGTGTGCCAACACGTCATTGCAAAGGCTGAATTGCAAAAGCAGGATGATGGTTCATCAACAAAGTTTCACCTATTTCATGATGAGACATTGCCATCATTTTTCAGAAGATTGGAATGGTCACCTGATGGTTCATTTTTAGTGGTGCCAGCAGGTATTCACAAGTTTTCTGCAGATTCATCAGCTTCCAACACGGCGTATATTTTTTCAAGAAAGGACTTTTCTAGGCCTGCTTTACAACTTCCTGGTGCCAGTAAACCTGTTGTAGCGGTGCGCTTCTGCCCTGTAATTTTCAGCGTTCATGCAACAAGACCAGATGCTCCATTCAAACTTCCATATCGTGTGGTCTTTGCTATAGCAACATTGAATTCATTGTACATTTATGATACCGAAAGCAGCTCCCCTATTGCAATCATGGCAGGACTTCATTATGCATCCATAACAGACATTGCATGGTCATCTGATGCAAAGTTTCTTGCTGTGTCATCCCAAGATGGCTACTGTACAGTAGTAGAATTTGAGGATGGAGATCTTGGGTCACCTGCGCCCATTTCTGAAATACCTTCCCATATTGCAAGTTATTTACCTCAAGTTACATTAGACAGTACCGACTTAAAGGGGGAGAGAATGGATGTGGACATATCTGATGTAGATGGAAAAGATATGAGCAAGGAATCGAAGATATCAACGGTGGAGGGTGTGAAAATTGCACAGGCTATGGGACCAAAGCAATCTGAAGCAGTGCGGGAAGAAAATTTGAAGTTATCTAATGTTCCAGTTTTGGTAACTTCTATTAGTGGTTCTTTAAGTAATGGACAAATATCTACTAGCGGTCAAGAGAAACAGGAGCAGAATGTGCAGCCAATAGCTGATTCAGAAGCTAAAACTAAACCAGCCAAGGCTGAAACAGAAAAGCTATCCAGAAGGCGCATAACTCCAATAGCTGTGAAAACTGCACAGGATATTGGATCAAATCAGTCTGAAGCAGTGCGAGCAGAAAATCTAAACTTACATAATGATCCAGTTTTGGTGGCTTCAACTACTGGTTCTTTAAGTAATGGTCCAGAATGTACTAGTAGTCAACAGAAACAGGAGCAGAGTGTGCAGCCAATAGATGATGCAGCAGATATGACTGGAACAGTTAAGGATGAACCAGTAAAGCCATCCAGAAGGCGCATAATTCCAGTAGCTGTTGAAAAGCCATAAACTAAATGATTGCAATAACTGTGACAAATGATTTGCTTGCTGAGGGTTCTTGTGAAATAACTATATAGAGAGTCAGAGATGGTACTGGTCATGTCCATTCTTATTGGCATTTGTAACTCCGGCTTGCTGTATCTTGCCAATTACAAAGTCACATTCTTATCTCATCATTGTAAGTTTTGACTTTGTGTGGTCTGATTGTAAGTGCTCATTTTTGTTAACAGTATTGATGGGATTTTAACCGTAAAACTGGTGCTGTTCTCTTTCAGTCTATCATTACAGTTGGATCTAGTCCATAAAATTAAAGCAGAAAGTTCTGTTAGTGTCTGCTTTTTTCTTTGACACTAGCTTTATACCGCACTAGTACAAATGCTGGAAGTTTCCAATACATTTTCTTCCGGATGCATAGATAAAATTATCAAATAGACCACGCATGTGTGGGTAATGATACACTTGAGAGGGTGTTACTAATACACAAGAGAACTCGTGGCAGTAGTTTACAATGGAGTTATTTCTGATAGCAGGAGAATTGATTTGGACATGACAGAATAAATTCCTTTCAGCAAATCGTTTTTATTCTCAATTTACTGAGACCACCCCTATCACATTCAACTGAAATGCTTTTATGACATT

Ace file of the UniGene sp_v3.0_unigene5756

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj\|BAA77766.1\| FAS2 [Arabidopsis thaliana] dbj\|BAB11430.1\| FAS2 [Arabidopsis thaliana] gb\|AED97930.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	72%
Sma3	FAS2	-	-	3.801e-09	-

Source	Gene names
Sma3	At5g64630; FAS2; GSVIVT00034835001; MICPUN_58505; NFB1501; NFB3501; OSTLU_14166; Os08g0108200; OsI_27538; OsJ_25768; P0450B04.31; PHYPADRAFT_195087; RCOM_1460830; VITISV_019119;

Source	GOs	Term	Type	Identity
Sma3	chromatin assembly complex	GO:0005678	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	double-strand break repair via homologous recombination	GO:0000724	Biological Process	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	cell proliferation	GO:0008283	Biological Process	-
Sma3	pollen development	GO:0009555	Biological Process	-
Sma3	meristem structural organization	GO:0009933	Biological Process	-
Sma3	trichome differentiation	GO:0010026	Biological Process	-
Sma3	heterochromatin assembly	GO:0031507	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	G-protein, beta subunit	IPR001632	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64630.2	FAS2, NFB01, NFB1, MUB3.9 Transducin/WD40 repeat-like superfamily protein chr5:25833298-25836158 FORWARD LENGTH=487	0.0	58%
RefSeq	Arabidopsis thaliana	NP_568990.1	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7U4G0

Fln msg: your sequence is longer than subject: 599 - 456

Fln protein: MKGGTLQIAWHDSKPVLTLDFHRLTGFLATGGADYDIKFWSLYQSESKKENPRASYESSLSYHSSAVNVLRFSPSGEQLGSGADGGELLIWKLHYTENGNSWKVLRTLSFHRKDILDIQWSPDGAFLISGSVDNSCIIWDANKGAVQQILDSHLHYVQGVAWDPAGQYVASLSSDRTCRIYINKPQAARAKSQEKLNYVCQHVIAKAELQKQDDGSSTKFHLFHDETLPSFFRRLEWSPDGSFLVVPAGIHKFSADSSASNTAYIFSRKDFSRPALQLPGASKPVVAVRFCPVIFSVHATRPDAPFKLPYRVVFAIATLNSLYIYDTESSSPIAIMAGLHYASITDIAWSSDAKFLAVSSQDGYCTVVEFEDGDLGSPAPISEIPSHIASYLPQVTLDSTDLKGERMDVDISDVDGKDMSKESKISTVEGVKIAQAMGPKQSEAVREENLKLSNVPVLVTSISGSLSNGQISTSGQEKQEQNVQPIADSEAKTKPAKAETEKLSRRRITPIAVKTAQDIGSNQSEAVRAENLNLHNDPVLVASTTGSLSNGPECTSSQQKQEQSVQPIDDAADMTGTVKDEPVKPSRRRIIPVAVEKP*

Protein Length: 600

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCGTCCCGACAATCCATTCATAGTTCTGAAGTCCAGCCCGGCGTCAACTTGGCTGAAAATCAATTTTTCTTCCGTTATTATGGGGTGTCATCAGTGAAACTGCTGGTTGGAAAAAAGTGCGAGAGAAGGCGCTGTAAAC_-_ATGAAAGGAGGCACATTACAGATAGCGTGGCACGATTCCAAGCCTGTACTCACCCTCGATTTTCATCGTCTCACAGGATTCCTTGCAACCGGTGGTGCCGATTACGATATTAAGTTTTGGTCATTGTACCAAAGTGAAAGCAAGAAGGAGAACCCTAGGGCATCTTATGAAAGCAGTCTCTCATATCATAGTTCTGCTGTTAATGTGTTGCGTTTTTCTCCATCTGGAGAGCAGCTTGGTTCAGGGGCTGATGGTGGGGAGCTGCTTATATGGAAACTGCATTATACAGAGAATGGAAATTCTTGGAAAGTACTAAGGACACTCTCCTTCCATCGCAAGGATATTCTTGACATACAATGGTCACCAGATGGAGCGTTCTTGATTTCTGGTTCAGTTGATAATTCATGTATTATATGGGATGCTAACAAAGGTGCTGTGCAGCAGATTTTGGATTCTCATCTGCACTATGTTCAAGGTGTTGCATGGGATCCAGCAGGCCAGTATGTTGCTTCATTGAGTTCTGACAGGACTTGCAGGATTTATATCAACAAGCCGCAGGCTGCTAGAGCTAAGAGTCAGGAGAAGCTGAACTATGTGTGCCAACACGTCATTGCAAAGGCTGAATTGCAAAAGCAGGATGATGGTTCATCAACAAAGTTTCACCTATTTCATGATGAGACATTGCCATCATTTTTCAGAAGATTGGAATGGTCACCTGATGGTTCATTTTTAGTGGTGCCAGCAGGTATTCACAAGTTTTCTGCAGATTCATCAGCTTCCAACACGGCGTATATTTTTTCAAGAAAGGACTTTTCTAGGCCTGCTTTACAACTTCCTGGTGCCAGTAAACCTGTTGTAGCGGTGCGCTTCTGCCCTGTAATTTTCAGCGTTCATGCAACAAGACCAGATGCTCCATTCAAACTTCCATATCGTGTGGTCTTTGCTATAGCAACATTGAATTCATTGTACATTTATGATACCGAAAGCAGCTCCCCTATTGCAATCATGGCAGGACTTCATTATGCATCCATAACAGACATTGCATGGTCATCTGATGCAAAGTTTCTTGCTGTGTCATCCCAAGATGGCTACTGTACAGTAGTAGAATTTGAGGATGGAGATCTTGGGTCACCTGCGCCCATTTCTGAAATACCTTCCCATATTGCAAGTTATTTACCTCAAGTTACATTAGACAGTACCGACTTAAAGGGGGAGAGAATGGATGTGGACATATCTGATGTAGATGGAAAAGATATGAGCAAGGAATCGAAGATATCAACGGTGGAGGGTGTGAAAATTGCACAGGCTATGGGACCAAAGCAATCTGAAGCAGTGCGGGAAGAAAATTTGAAGTTATCTAATGTTCCAGTTTTGGTAACTTCTATTAGTGGTTCTTTAAGTAATGGACAAATATCTACTAGCGGTCAAGAGAAACAGGAGCAGAATGTGCAGCCAATAGCTGATTCAGAAGCTAAAACTAAACCAGCCAAGGCTGAAACAGAAAAGCTATCCAGAAGGCGCATAACTCCAATAGCTGTGAAAACTGCACAGGATATTGGATCAAATCAGTCTGAAGCAGTGCGAGCAGAAAATCTAAACTTACATAATGATCCAGTTTTGGTGGCTTCAACTACTGGTTCTTTAAGTAATGGTCCAGAATGTACTAGTAGTCAACAGAAACAGGAGCAGAGTGTGCAGCCAATAGATGATGCAGCAGATATGACTGGAACAGTTAAGGATGAACCAGTAAAGCCATCCAGAAGGCGCATAATTCCAGTAGCTGTTGAAAAGCCATAA___ACTAAATGATTGCAATAACTGTGACAAATGATTTGCTTGCTGAGGGTTCTTGTGAAATAACTATATAGAGAGTCAGAGATGGTACTGGTCATGTCCATTCTTATTGGCATTTGTAACTCCGGCTTGCTGTATCTTGCCAATTACAAAGTCACATTCTTATCTCATCATTGTAAGTTTTGACTTTGTGTGGTCTGATTGTAAGTGCTCATTTTTGTTAACAGTATTGATGGGATTTTAACCGTAAAACTGGTGCTGTTCTCTTTCAGTCTATCATTACAGTTGGATCTAGTCCATAAAATTAAAGCAGAAAGTTCTGTTAGTGTCTGCTTTTTTCTTTGACACTAGCTTTATACCGCACTAGTACAAATGCTGGAAGTTTCCAATACATTTTCTTCCGGATGCATAGATAAAATTATCAAATAGACCACGCATGTGTGGGTAATGATACACTTGAGAGGGTGTTACTAATACACAAGAGAACTCGTGGCAGTAGTTTACAATGGAGTTATTTCTGATAGCAGGAGAATTGATTTGGACATGACAGAATAAATTCCTTTCAGCAAATCGTTTTTATTCTCAATTTACTGAGACCACCCCTATCACATTCAACTGAAATGCTTTTATGACATT

Fln Alignment:

Contig5756___MKGGTLQIAWHDSKPVLTLDFHRLTGFLATGGADYDIKFWSLYQSESKKENPRAXXXXXXXXXXXAVNVLRFSPSGEQLGSGADGGELLIWKLHYTENGNSWKVLRTLSFHRKDILDIQWSPDGAFLISGSVDNSCIIWDANKGAVQQILDSHLHYVQGVAWDPAGQYVASLSSDRTCRIYINKPQAARAKSQEKLNYVCQHVIAKAELQKQDDGSSTKFHLFHDETLPSFFRRLEWSPDGSFLVVPAGIHKFSADSSASNTAYIFSRKDFSRPALQLPGASKPVVAVRFCPVIFSVHATRPDAPFKLPYRVVFAIATLNSLYIYDTESSSPIAIMAGLHYASITDIAWSSDAKFLAVSSQDGYCTVVEFEDGDLGSPAPISEIPS
D7U4G0______________MRGGTVQINWHDTKPILTLDFHPLSGTLATGGADYDIKLWLINSGEVQKEVPTVSYQTSLSYHGSAVNILRFSPTGEQLASGADGGELIIWKLHSTDTGPSWKVLKTLSFHRKDVLDLQWSTDGAFLISGSVDNSCIIWDVNKGSVHQILDAHLHYVQGVAWDPQSKYVASLSSDRSCRIYVNKPQ-NKTKGIEKMNYVCQHVITKSEQQMTDDSKSVKSHLFHDETLPSFFRRLKWSPDGSFLLVPAGSYKFSPASGPVNTAYVFSRKDLSRPALQLPGSSKPVIAVRFCPMAFHLQGSNSAGFFKLPYRLIFAVASLNSLYIYDTESIPPIAILAGLHYAAITDIAWSHDGKYLAISSQDGYSTLVEFENGELGSPFLLSEVES

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
1907	80		20		0.995493
1908		20		80	0.995493
1976			12	87	0.992554
1978		87	12		0.992554
2046	83		16		0.994512
2049	16		83		0.994512
2082		20		80	0.995493
2088		20	80		0.995493
2159	25		75		0.996473
2186		25	75		0.996473
2292	27	63		9	1.0
2371		22	77		0.999999
2441	25		75		1.0
2458	37			62	1.0
2475	80		20		0.995493
2488			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain