SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5746

Length: 1911 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5746

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO	-	-	0.0	55%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	0.0	55%
Sma3	Beta-glucosidase, putative	-	-	7.49695e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Prunasin beta-glucosidase.	EC:3.2.1.118	-	9.625e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		9.625e-11	%
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		0.0	%
Sma3	Starch and sucrose metabolism	00500		0.0	%
Sma3	Phenylpropanoid biosynthesis	00940		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	Beta-D-fucosidase.	EC:3.2.1.38	-	5.419e-07	-

Source	Gene names
Sma3	AH1; AT3G18080; AT4g27820; AT4g27830; At1g02850; At1g02850/F22D16.15; At1g26560; At1g45191; At1g61810; At2g44450; At2g44470; At2g44480; At3g18080; At3g60130; At3g60140; At4g27830; At5g24540; At5g42260; At5g44640; B1168A08.29-1; B1168A08.29-2; B1168A08.31;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-mannosidase activity	GO:0004567	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	beta-D-fucosidase activity	GO:0033907	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	-
Sma3	prunasin beta-glucosidase activity	GO:0050224	Molecular Function	-
Sma3	raucaffricine beta-glucosidase activity	GO:0050247	Molecular Function	-
Sma3	beta-primeverosidase activity	GO:0050535	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G44480.1	BGLU17 beta glucosidase 17 chr2:18359780-18363001 FORWARD LENGTH=517	50%
RefSeq	Arabidopsis thaliana	NP_849578.5	beta glucosidase 11 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002305150.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9ZT64

Fln msg:

Fln protein: MSINIADMRIVGSIIVLELLILLSLSAVSAYTQHLSRNDFPPDFIFGVASSAYQYEGAAAEDGRKPSIFDTFTHRKGTTMDGGNGDVAVDQYHRYKEDIDLMSAMGVDAYRFSISWPRLIPDGKGPINPKGIEYYNNLINELLANGIQPHVTLYHFDLPQALEDSYGGFINPQIVEDFVAYADVCFREFGDRVKYWSTFNEPNIFAIIGYDGGFFPPQRCSQPFGNCTAGNSTVEPYIVGHHVLLAHSAAVELYRKKYQTKEKGWIGLVILANWMIPLTNKSTDVAATERANDFMLGWFLDPLVLGNYPVGIRNVVGSRLPSFTEEQAQKIRGSLDFIGVNHYFTMYCFDVPRKNAPMSRDYAQDMSIGYAVERDGIPISNTTTLNGNPVLPQSMQAVLEYIEDRSHNTPILVYENGFAEPNNSSIPLSEALNDQYRIDLHRDVLWYVLAAIRNGSDIRGYFIWTLLDDFEVLTSYTWRFGLHYVDFNDNLKRYAKLSAQWYKTFLQRWDSKGSQILLNTNSSMNLS*

Protein Length: 529

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACACGAACTGTGCACGGCTGCTTGGGTGCCCTCATCCTCAATTTCATTATACTGATTCTCATCTGAACTGAAGCTTCAGCCTAAAGTCTTCAACCA_-_ATGAGTATTAATATAGCAGACATGAGAATAGTAGGATCAATTATAGTTTTAGAACTGCTGATACTGCTGAGTCTGTCTGCTGTTTCTGCCTATACACAACACCTATCTCGAAATGACTTCCCTCCTGACTTCATTTTTGGTGTTGCCTCTTCTGCTTATCAGTATGAAGGTGCTGCAGCAGAAGATGGTCGGAAGCCAAGCATTTTTGACACTTTCACTCATAGGAAAGGGACTACAATGGATGGAGGTAATGGAGATGTAGCTGTTGATCAATACCATCGTTACAAGGAGGACATTGATCTAATGTCTGCAATGGGAGTAGATGCCTATAGATTTTCAATCTCTTGGCCCAGGCTTATTCCTGATGGTAAAGGACCTATCAACCCAAAGGGCATTGAGTACTATAATAACCTCATCAACGAGCTTTTAGCCAATGGCATTCAACCGCATGTTACATTATACCACTTTGATCTGCCCCAAGCTCTGGAAGATTCCTATGGAGGTTTCATAAATCCACAAATAGTGGAGGATTTTGTAGCGTATGCAGATGTGTGTTTCAGAGAATTTGGTGATCGAGTGAAGTATTGGTCCACTTTCAACGAGCCCAATATATTTGCAATTATAGGTTATGATGGTGGATTTTTCCCACCTCAAAGATGCTCCCAGCCATTTGGAAATTGTACTGCTGGAAACTCAACTGTTGAACCTTATATTGTTGGCCATCATGTCTTGCTAGCACATTCAGCTGCTGTGGAGCTGTACAGGAAAAAATATCAGACAAAGGAAAAGGGATGGATTGGATTAGTAATTTTAGCAAATTGGATGATACCTCTTACCAATAAATCCACAGATGTAGCTGCAACTGAAAGAGCAAATGACTTTATGCTGGGTTGGTTCTTAGACCCGCTTGTTTTGGGAAACTATCCAGTGGGTATAAGGAATGTAGTAGGTTCTCGATTACCTTCATTTACAGAGGAACAGGCTCAGAAGATACGAGGCTCCTTGGACTTCATTGGTGTCAATCACTATTTTACCATGTATTGTTTCGATGTTCCAAGAAAAAATGCTCCTATGTCAAGAGACTATGCTCAAGATATGTCTATTGGATACGCAGTGGAGCGAGATGGAATCCCCATCAGCAATACGACAACATTAAATGGTAATCCAGTTTTACCACAAAGTATGCAGGCAGTGCTTGAATATATTGAGGACCGTTCTCATAATACTCCCATTCTTGTGTATGAAAATGGATTTGCAGAGCCTAATAATTCTTCTATTCCGCTCTCCGAGGCTTTAAATGACCAATACAGGATTGATCTCCACCGGGATGTTCTTTGGTATGTGCTTGCAGCAATAAGGAATGGGTCAGATATTCGTGGATACTTTATATGGACTCTACTGGATGACTTTGAAGTTTTGACTAGTTACACTTGGCGTTTTGGTCTTCATTATGTGGACTTCAATGACAACTTGAAGCGGTATGCCAAGCTATCTGCTCAATGGTACAAGACTTTTCTGCAGAGGTGGGACAGCAAGGGATCACAAATTCTACTCAACACCAACAGTTCCATGAACCTCTCATAG___AATTATGATTTATTTTATGAAAAAACAAGGGCATTATGTTTTGAACATGATTTTGTTAAAGGCCAAAACCTGATGTTTATGTTCCCCTACAAAATGCTTTTATAACACATAATATGTGATATGTATACCTTGCAGGAATGCATTTTTAAGTAAATCACTGGATTGCAGATCACCCAATAAAGTTACCTGAACTTTTGAGGAATCCAC

Fln Alignment:

Contig5746___TQHLSRNDFPPDFIFGVASSAYQYEGAAAEDGRKPSIFDTFTHRKGTTMDGGNGDVAVDQYHRYKEDIDLMSAMGVDAYRFSISWPRLIPDGKGPINPKGIEYYNNLINELLANGIQPHVTLYHFDLPQALEDSYGGFINPQIVEDFVAYADVCFREFGDRVKYWSTFNEPNIFAIIGYDGGFFPPQRCSQPFGN--CTAGN-STVEPYIVGHHVLLAHSAAVELYRKKYQTKEKGWIGLVILANWMIPLTNKSTDVAATERANDFMLGWFLDPLVLGNYPVGIRNVVGSRLPSFTEEQAQKIRGSLDFIGVNHYFTMYCFDVPRKNAPMSRDYAQ----DMSIGYAVERDGIPISNTTTLNGNPVLPQSMQAVLEYIEDRSHNTPILVYENGFAEPNNSSIPLSEALNDQYRIDLHRDVLWYVLAAIRNGSDIRGYFIWTLLDDFEVLTSYTWRFGLHYVDFNDNLKRYAKLSAQWYKTFLQRWDSKGS
Q9ZT64______________TARLDRNNFPSDFMFGTASSAYQYEGAVREDGKGPSTWDALTHMPGRIKDSSNGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPHANPLCMTGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTTLYATSTP----PLSPDHTQYLYPDSRVYLTGERHGVSIGERTGMDGLFVVPHGIQKIVEYVKEFYDNPTIIIAENGYPESEESSSTLQENLNDVRRIRFHGDCLSYLSAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDFISDQKRYPKLSAQWFRQFLQH-DDQGS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1423	75		25		0.996473
1501			88	11	0.923564
1548		11		88	0.923564
1676		87		12	0.992554
1822	20	20			0.99255
1825			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain