SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5720

Length: 1363 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5720

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gb\|AAK32920.1\|AF367333_1 F23M19.12/F23M19.12 [Arabidopsis thaliana] gb\|AAM91385.1\| At1g34200/F23M19.12 [Arabidopsis thaliana] gb\|AEE31685.1\| glyceraldehyde-3-phosphate dehydrogen	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Oxidoreductase, putative	-	-	1.223e-08	-

Source	Gene names
Sma3	AT1G34200; AX110; At1g34200; At1g66130; At4g09670; F15E12.2; F17A8.20; F23M19.12; GSVIVT00003334001; GSVIVT00005440001; GSVIVT00005442001; GSVIVT00013350001; GSVIVT00013352001; GSVIVT00032909001; LOC_Os10g26390; LOC_Os10g26400; OSJNBa0044A10.21; Os10g0403

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, N-terminal	IPR000683	-	-
Sma3	Oxidoreductase, C-terminal	IPR004104	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G09670.1	Oxidoreductase family protein chr4:6107382-6109049 REVERSE LENGTH=362	55%
RefSeq	Arabidopsis thaliana	NP_192705.1	uncharacterized oxidoreductase [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002306732.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF1

Fln msg: Separated hits, possible frame ERROR between 1004 and 1010,

Fln protein: MAVEMVRFGILGCANIARKNSRAINKSPNSLIYAIGSRSLEKAAAFVSANNLSPEVKLYGSYDEVLDDPSVDAVYIPLPTSLHLEWSLKSAQKKKHILLEKPPALSVQDLDIIIEVCNTNGVQLMDGTMWMHHPRTHKMKQLLGNPDLFGNLNSVHSNFTFPAPADFLQNNIRVKPDMDALGALGDLGWYCIRAILWANDYQMPHSVTALPGSVVNDVGVILDCGATFDWQDGRVATFSCSFLGGMSMDLIVNGSKGVLRLHDFVIPYEEDSSSxxxTSNVKLTELHTGWDSKPCEHLVTTELPQESLMIEEFASLVKSVRDSGGKPDPQWPAITRKTQVLLNAVKTSIQEGLLSVTL*

Protein Length: 360

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACTCCCACTTTCTGATGCGTTTGTCACTCCGTTTTTCCATACAATAAGCCGAGATCACGCTACCCTTTTCAGCGCTCGTATTTTGAACCCGTAGAAGCTTCGTTCCGATCCGTGGAACCCGTAGAAGCTTCGCTCCGATCCGTGTGACAGTATA_-_ATGGCAGTAGAAATGGTCCGTTTTGGAATACTGGGCTGTGCAAACATAGCCAGAAAGAATTCCAGAGCAATAAATAAGTCACCCAATTCATTAATCTATGCAATTGGGTCCAGATCTCTAGAGAAGGCCGCGGCCTTTGTTTCTGCTAATAATTTGTCTCCAGAAGTGAAATTGTATGGCAGCTATGATGAAGTTCTGGATGATCCATCTGTTGATGCTGTATACATTCCTCTTCCTACCAGTTTACATCTTGAATGGTCTCTCAAGTCTGCCCAGAAAAAGAAACACATCCTTCTTGAGAAGCCCCCTGCCTTGTCTGTACAAGACCTTGACATCATCATTGAGGTCTGCAACACAAATGGTGTTCAACTTATGGATGGCACCATGTGGATGCACCATCCAAGAACCCATAAAATGAAACAACTGCTGGGAAATCCAGACCTATTCGGCAACTTGAATTCGGTCCACAGCAATTTCACATTCCCTGCCCCTGCCGATTTTTTACAAAACAATATACGGGTTAAGCCAGACATGGATGCACTGGGAGCATTGGGTGATTTGGGATGGTATTGCATTAGGGCAATCCTGTGGGCTAATGACTACCAAATGCCTCATAGTGTAACTGCACTACCTGGATCTGTTGTGAATGATGTAGGAGTCATTCTGGATTGTGGGGCTACTTTTGATTGGCAAGATGGAAGAGTTGCAACTTTTAGCTGTTCTTTTCTCGGTGGTATGTCAATGGATTTGATAGTCAATGGGTCCAAAGGAGTCCTGCGCCTTCATGATTTTGTGATTCCTTATGAGGAAGACTCTTCATCTTAxxxxxxTACATCAAATGTCAAACTTACAGAACTCCACACTGGTTGGGATTCCAAGCCATGTGAACACTTAGTCACGACAGAATTGCCTCAGGAGTCTCTTATGATTGAAGAATTTGCAAGCCTGGTTAAGAGCGTCCGAGATTCTGGAGGGAAACCTGATCCACAGTGGCCTGCCATTACCAGGAAGACTCAGGTACTGCTGAATGCTGTAAAAACATCCATCCAGGAAGGCTTACTCTCAGTCACACTGTGA___AATAAATAATTGATTATGACATAGTGGAAGGCTTACTCTCAGTCACACTGAGATAAATAATTGATTATGACACAGTTGTGGAGAACTTTCTTACTACTGTCACCCTTC

Fln Alignment:

Contig5720___MAVEMVRFGILGCANIARKNSRAINKSPNSLIYAIGSRSLEKAAAFVSANNLSPEVKLYGSYDEVLDDPSVDAVYIPLPTSLHLEWSLKSAQKKKHILLEKPPALSVQDLDIIIEVCNTNGVQLMDGTMWMHHPRTHKMKQLLGNPDLFGNLNSVHSNFTFPAPADFLQNNIRVKPDMDALGALGDLGWYCIRAILWANDYQMPHSVTALPGSVVNDVGVILDCGATFDWQDGRVATFSCSFLGGMSMDLIVNGSKGVLRLHDFVIPYEEDSSSYxxTSNVKLT-ELHTGWDSKPCEHLVTTELPQESLMIEEFASLVKSVRDSGGKPDPQWPAITRKTQVLLNAVKTSIQEGLLSVTL
A9NZF1______________MAEESVRFGILGCANIANKLSRAINLAPNSTLHAISSRSLEKATAFASTNNLSPEVKLYGSYDEVLDDPSVDAVYIPLPTSLHLEWALKSVQKKKHILLEKPPALSVEELDKIIEACNANGLQLMDCTMWMHHPRTYRMKQLLGNPDLFGNLKSIHSNFAYCAGGDFLTKDIRVKPDRDALGALGDAGWYSIRAILWANDYQMPQTVTALPGHVVNEAGVILACGATFLWQDGRVATFECSFLSHMSMDIIVHGSRGCLSLRDFVVPYEENCASFxxSSNVKFPGNFDTGWDPRPTEHSVITELPQEALMVEEFSRLVKSIRDIGAKPDLQWSAITRKTQILVNAVNTSIKEGLISVTL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
944	33	66			0.997452
945		66		33	0.997452
946	66		33		0.997452
947	66		33		0.997452
948	66		33		0.997452
1026	80			20	0.995493
1027		80	20		0.995493
1028			20	80	0.995493
1029			20	80	0.995493
1043	16	83			0.994512
1143	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain