SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5709

Length: 2117 nt

UniGene Fasta

>sp_v3.0_unigene5709
ATGGGCGCCCTGTGCTTATCGTATTTTCAGTCTGCAGAGTTTCAGCAATGGCGGACCGCAAGCAGTCCTTGGCGAGGATTACGAGATAGCCTTTTCTATAGCCCGTAGGACCCCAGTTCAACGGCGCTCTGTCTCGAGCTTTGTGATACAGTACAGCAATTACACGTCAGATAAGGATTTCGCGCAAGTTAAGATCACAGGGTGTCTTGGAATTGCCCGCTTGAAAAAGGCAAAGCACAAAAGCAAGGGCAAGTGCTCGGAATCTTGCTTTTATCTTTCGTAACAACATGCATTATTTAGCTTCATACCCGGGGCTGATTATATAAACGGTGACTTAAACCGCAGGAGGGTTTATTCGTGGAATATTAGATTGAATGATCAAATGTTGAGTGCTTGCGTTCGTAGCTGCATTATTACAGGAGAGGCTCTTGGGCATAGTTTTAGAGTTCATAATGGACGGCTTGATATATCTTCTGAAATATGCAATTGAATAAGAGGCTCTGGAAGAAGAGAATTTAGGGCCTGGAAACAGGAAAGGAGAGTTGAATAAATGGGGGCCTGCTGCTGTCGTCTAAGAACAAATGTTCTCGTTAATTACAGCTCAGGCCTTTGTCAAGGACGTTACTGCATTCCTGGCTGTGCAAGTTGTACTCGTGGAGTGCTGTGTGCTTCTAGAGCAGAAGAGATAGATTCTTCTTCTGTGCAAGATGGGAGGCGTGTTCAGAGAGCTTCTGCTGGACTAACGACAAGACAGAATAAGAGTGGTCCTGTTCAGAGTCGGGAGTCTCAACTTCTGAGAGTAAGTTCTGATGAAACTCAAGGTGAAGAAGCAGTTCCATTTCAAAATTTGAAAAGTGCAGAAAACGAGAGTGAATTATCAGATTGCAAACCAGATTCTCCAGAAAAATGCCAGCCATCAAAACTAAGTGATGCTGTTGTGCCATTGGTGGATGAAGAGGATGGTTGTCCCACTTGTCTTGAAGAATATGATGAAGAGAACCCCAAAATAATTACGAAATGTGATCATCATTTTCATCTTGCGTGTATCCTTGAGTGGATGGAGAGAAGTGACACATGTCCCATTTGCGATCAGGAAATGATATTCAATGAGACAACATAAGGTATCATTCAATGAGACATCTTCAGAGTCACTCTAGGACTGGGAAGTTTATTTCTTCTCCTAGTTATTAGATTTTGAGATCTGTCTGCAGTGAAGCAGCAATGAGGTGGAAGGGGATTGCCTCTTTCTTTTTTGTGTTACATGTAATAGCAATCCTATGTTGAATTACGTTCATATAATATTAGATACCTAGTTCAAGATGACCGTATTCGTCACTAAAATTGAGATGTTTTCTCCTTTATGAAACTTTGTTTCTTCTGTGGCCCCTTCTTTATCTTTTTATGGTCTGTAGTTTACTTCGAAGAAAGCTTGAGCCAAGTTAATAATGTGCAAAGCTATTCCAGATGGTCTCGAAGGACTCTTTCGAAACCAATGTGACATTCATGCAACTGGATCTAAGGGAGCAAATCCAAGAGAGGTAGAATCTGTTTGGGACCTATTATGACCTGGACACTGGTATAGCAAATTTTGAACTGCATGCGTATATTAGGAAATCTCACGAGACACAGCAAGGTCTGAATGGCCTATGAAGACAAGGACAGCAGGTTCACAATATTTTGAGCTGCACCCTTATTAGGAATCTCAGTGGAGCAGAATAAATATCAAGGTCTCAAAGTAGCCTTCCTGTAATTATTTTTGAGGACATAGTGTAGTAGCGAAGTTCTGATCTACAGCTTGCATGGGAAATATCAACTCACTGCATTATGATGCTTATCAAAGGTTGTGGGTTTGCTTTGTGGAGATTAATTAGAAGTATCTTCAAATATCCTGTCCTTTTAAATGTCGCCAATTAGATGTTTTGGTAGTGGATTGAATTATGCTCTTGCCATGTTTACTAATTTTCGAGCTATCTCATTCAGAGGTATATCCCCTCCGTAGAGCATGATGCAGAGCGAAGGTTGAGAGTTGCACAGTGGTGATTAAATAAAGCATCTTCAAATATCTTTCTCCTCTGAATGTGGCTAATTGAATGCTTATATGGATGATCCATGCGGAA

Ace file of the UniGene sp_v3.0_unigene5709

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDU7_RICCO	-	-	4.0e-27	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	AT4g23450; At4g23450; At5g38895; At5g41350; F16G20.150; GSVIVT00026939001; GSVIVT00030000001; LOC_Os10g05230; OSJNAa0029P06.17; OSJNBa0034A02.8; Os10g0142100; OsI_32723; OsI_36751; OsJ_30697; PHYPADRAFT_9762; POPTRDRAFT_548117; POPTRDRAFT_644484; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G41350.1	RING/U-box superfamily protein chr5:16542026-16543092 REVERSE LENGTH=212	8.0e-28	64%
RefSeq	Arabidopsis thaliana	NP_568590.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	1.0e-27	64%
RefSeq	Populus trichocarpa	XP_002320810.1	predicted protein [Populus trichocarpa]	2.0e-27	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTQ1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 190 - 228

Fln protein: MGACCCRLRTNVLVNYSSGLCQGRYCIPGCASCTRGVLCASRAEEIDSSSVQDGRRVQRASAGLTTRQNKSGPVQSRESQLLRVSSDETQGEEAVPFQNLKSAENESELSDCKPDSPEKCQPSKLSDAVVPLVDEEDGCPTCLEEYDEENPKIITKCDHHFHLACILEWMERSDTCPICDQEMIFNETT*

Protein Length: 191

Fln nts: ATGGGCGCCCTGTGCTTATCGTATTTTCAGTCTGCAGAGTTTCAGCAATGGCGGACCGCAAGCAGTCCTTGGCGAGGATTACGAGATAGCCTTTTCTATAGCCCGTAGGACCCCAGTTCAACGGCGCTCTGTCTCGAGCTTTGTGATACAGTACAGCAATTACACGTCAGATAAGGATTTCGCGCAAGTTAAGATCACAGGGTGTCTTGGAATTGCCCGCTTGAAAAAGGCAAAGCACAAAAGCAAGGGCAAGTGCTCGGAATCTTGCTTTTATCTTTCGTAACAACATGCATTATTTAGCTTCATACCCGGGGCTGATTATATAAACGGTGACTTAAACCGCAGGAGGGTTTATTCGTGGAATATTAGATTGAATGATCAAATGTTGAGTGCTTGCGTTCGTAGCTGCATTATTACAGGAGAGGCTCTTGGGCATAGTTTTAGAGTTCATAATGGACGGCTTGATATATCTTCTGAAATATGCAATTGAATAAGAGGCTCTGGAAGAAGAGAATTTAGGGCCTGGAAACAGGAAAGGAGAGTTGAATAA_-_ATGGGGGCCTGCTGCTGTCGTCTAAGAACAAATGTTCTCGTTAATTACAGCTCAGGCCTTTGTCAAGGACGTTACTGCATTCCTGGCTGTGCAAGTTGTACTCGTGGAGTGCTGTGTGCTTCTAGAGCAGAAGAGATAGATTCTTCTTCTGTGCAAGATGGGAGGCGTGTTCAGAGAGCTTCTGCTGGACTAACGACAAGACAGAATAAGAGTGGTCCTGTTCAGAGTCGGGAGTCTCAACTTCTGAGAGTAAGTTCTGATGAAACTCAAGGTGAAGAAGCAGTTCCATTTCAAAATTTGAAAAGTGCAGAAAACGAGAGTGAATTATCAGATTGCAAACCAGATTCTCCAGAAAAATGCCAGCCATCAAAACTAAGTGATGCTGTTGTGCCATTGGTGGATGAAGAGGATGGTTGTCCCACTTGTCTTGAAGAATATGATGAAGAGAACCCCAAAATAATTACGAAATGTGATCATCATTTTCATCTTGCGTGTATCCTTGAGTGGATGGAGAGAAGTGACACATGTCCCATTTGCGATCAGGAAATGATATTCAATGAGACAACATAAGGTATCATTCAATGAGACATCTTCAGAGTCACTCTAGGACTGGGAAGTTTATTTCTTCTCCTAGTTATTAGATTTTGAGATCTGTCTGCAGTGAAGCAGCAATGAGGTGGAAGGGGATTGCCTCTTTCTTTTTTGTGTTACATGTAATAGCAATCCTATGTTGAATTACGTTCATATAATATTAGATACCTAGTTCAAGATGACCGTATTCGTCACTAAAATTGAGATGTTTTCTCCTTTATGAAACTTTGTTTCTTCTGTGGCCCCTTCTTTATCTTTTTATGGTCTGTAGTTTACTTCGAAGAAAGCTTGAGCCAAGTTAATAATGTGCAAAGCTATTCCAGATGGTCTCGAAGGACTCTTTCGAAACCAATGTGACATTCATGCAACTGGATCTAAGGGAGCAAATCCAAGAGAGGTAGAATCTGTTTGGGACCTATTATGACCTGGACACTGGTATAGCAAATTTTGAACTGCATGCGTATATTAGGAAATCTCACGAGACACAGCAAGGTCTGAATGGCCTATGAAGACAAGGACAGCAGGTTCACAATATTTTGAGCTGCACCCTTATTAGGAATCTCAGTGGAGCAGAATAAATATCAAGGTCTCAAAGTAGCCTTCCTGTAATTATTTTTGAGGACATAGTGTAGTAGCGAAGTTCTGATCTACAGCTTGCATGGGAAATATCAACTCACTGCATTATGATGCTTATCAAAGGTTGTGGGTTTGCTTTGTGGAGATTAATTAGAAGTATCTTCAAATATCCTGTCCTTTTAAATGTCGCCAATTAGATGTTTTGGTAGTGGATTGAATTATGCTCTTGCCATGTTTACTAATTTTCGAGCTATCTCATTCAGAGGTATATCCCCTCCGTAGAGCATGATGCAGAGCGAAGGTTGAGAGTTGCACAGTGGTGATTAAATAAAGCATCTTCAAATATCTTTCTCCTCTGAATGTGGCTAATTGAATGCTTATATGGATGATCCATGCGGAA

Fln Alignment:

Contig5709___DGRRVQRASAGLTTRQNKSGPVQSRESQLLRVSSDETQGEEAVPFQNLKSAENESELSDCKPDSPEKCQPSKLS---DAVVPLVDEEDGCPTCLEEYDEENPKIITKCDHHFHLACILEWMERSDTCPICDQEMIFNET
C0PTQ1______________DPRYVRLQRDGLVSRREKTSSYLHEESEPIRRDNNEGCVEALTTLQKRNGADGEEQIQGYHTEISEKCQSSKTMLTVESVIALVEDEDICPTCLDEYTVENPKISAQCGHHFHLGCIYEWMERSENCPVCNKEMVFSES

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
527	83		16		0.999991
666			90	10	0.90298
726		22	77		0.999999
728	10		90		0.90298
806			11	88	0.923564
807		88	11		0.923564
808			11	88	0.923564
911		85		14	0.993533
1369		10		90	0.90298
1387		88		11	0.923564
1418		11		88	0.923564
1702		45		54	1.0
2016		71	28		1.0
2068	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain