SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5699

Length: 2149 nt

UniGene Fasta

>sp_v3.0_unigene5699
ATGGGGAGAATGACCTTTTTATCTCGTGAGCTGGTTAACTGTCCTGCACACTTTCTCAGTATTGGAATAGCTATGAGTAGTATACTGTAGAGAATATTGTGTGTTGATTCCTCCTTCTTCTACTGAAATCCCGATTGAAATGGTGTCTGCTCATGGGGTTTTAGGATGACCCAAGTGCAGTTTGATCTCCAAACGATCTTAATCTTGTCAATGCTCTTTGTGGGTGCGTCTCATTCTCAGTCTTCCGCCATGTTTCCTGCAGGTTCAATCCAGAGTATGAGCAACGGAGTTGGGCTGGTATCAGCTCCTTTCTTAATTTCAAATGTACCCAACAACAAGAATTGTCTGCAGAGGGATCTTATAAATGAGCTTCATGAAGCTGGCATCTATGATTATGCTCAGAGTCTGGGAATTATTCAGAATGGGGTTATTGTTGTGCAAAATGAGTTATGGCCAGGGGCGGGTGCGTATTCGTTGCCTATCTCTAATGGGACACCTACCACTTATCCACAATTTAACCCATGCCCATCAGTGCCATTGGTTTCTGTGGATACTGGAAGTAATGGTTCTTCATCAAGAGGTAGTGACGGGGCCATGGCCAGACTTGCATCAGACAATATCATGGCGAGGTTGAACCATTTGGATGCTGAAGGGGACGAATTTGAGTCTCCAGGGACAGTAGGGAGGAAGAGAAGACGAATTCATCGATCCAGTATTGGTGTAACTGGTGGCAGAGGACTCCGGCATTTCAGCATGAAAGTTTGTAAGAAAGTGGAGAGCAAGGGCTGGACAACATACAACGAGGTTGCATCTGAATTAGTGGCTGAATTTGTGAATCCAAACAGCACACATTTTTCACAAGATCAGCAACAGTTTGATGAGAAGAACATTAGGAGGAGGGTGTATGATGCACTGAACGTATTGATGGCCATGGACATAATATCAAAGGAGAAGAAGGAGATTAGATGGAAAGGGCTACCTACAACAAATCTAAGTGACATTGAAAGGCTAAAGACTGAGCGAAAGAGGTTGACAAATAGGATTGACAAAAAGAAGGCTTATTTACAGGAACTCAAAGAACAGATAACAGGCCTTCAAAATCTAGTACAGCGGAATGAAAGAGTATATGGGTCAGGCAATAGTCCTTCTGGAGGTGTGACATTACCATTCATATTGGTGAAGACTCGTCCCCATGCAACTGTTGACATTGAGATCTCAGAAGACATGCAGCTAGTTCACTTCGACTTCAATAGTACACCATTTGAATTACATGATGATGCATTTGTGCTGAAAGCAATGCGATTTTGCAAAACACCAGATAGTAATGGTCCAGTCGATGAAAAGCCAGACAACGAATTTATGAAAAATTACTCAGTTCTATCAACCATGCACAGGGGTACCTCATCCCCTCATTCAACAAGGACAAGTGATACAGATTCCTATTCTCTCTCAAGTATTCCTGGGAAAATCTGCTCTTCCTCCCCTGACCCAGGCATAATAAAAACACGTATTAAGAACGAGAACTTTATATGATGGTCCATGAGCTTGTTGCCAAGCAGCTTCAGCTTTGTACTAGTAAGTGCTCCTGCTCTGATGGGAGTCATACTCAAACCGAGTTTATATGTATTGCTTCTTTTCATTTATACCTGCTTGTCATTACTTGTATAGTATATATGTTTCAGCATGTGGGCTACCTGTTAGCCCAAGCGGGAAGAGTTATATGTTGAATTGAGAGAGTAAGAAATGTACATTATTGTGATATAAAGAGGAATTTTCTTTATATTCCAAACTGTCCTATTAGGACATTAAGCAGTCATTTATAGACTTTATGCAGTCTATTCGTGTACTGAGCTCTTCAGTTAAAACCGGAAATATGTTCAATGTTGAACAACGAGGATCACACAGATTGACCCTCTTTTTTTCAGGTCGAGAGGATTTCCTTGATTCGAGTTTTGATGTCTGTTAATAAGTTAAAGCAACTTATTTTCATTTGCATGCTTGTTAAAATTTATACATCGAGGCTAGACTACTTAGAGGGATGAGATTGGACTTGTATGTTTCTCAGATTTGGGCTAGGTGGCCAGGACTTTGTATATTATTTGTTGTTTCCTATATATGAACTGTTACATGCCCTAGTGGCTATGTTTAC

Ace file of the UniGene sp_v3.0_unigene5699

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DP1 [Populus tremula x Populus tremuloides] gb\|AAP73785.1\| DP1 [Populus tremula x Populus tremuloides]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Transcription factor Dp-1	-	-	3.19e-08	-

Source	Gene names
Sma3	At5g02470; At5g02470/T22P11_60; At5g03415; B1144G04.29; CHLREDRAFT_206363; DP; DP1; DP2; DPa; DPb; Dp; F12E4_160; GSVIVT00021305001; GSVIVT00023246001; LOC_Os03g05760; LOC_Os10g30420; MICPUCDRAFT_57221; MICPUN_98766; OSTLU_38105; Os01g0678700; Os03g015210

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Transcription factor E2F/dimerisation partner (TDP)	IPR003316	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Transcription factor DP, C-terminal	IPR014889	-	-
Sma3	Transcription factor DP	IPR015648	-	-
Sma3	Transcription factor DP, subgroup	IPR016556	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03415.1	DPB, ATDPB Transcription factor DP chr5:842842-845200 FORWARD LENGTH=385	71%
RefSeq	Arabidopsis thaliana	NP_850757.1	Transcription factor DP [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002326197.1	transcription factor DP, E2 dimerization partner protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABL1

Fln msg:

Fln protein: MTQVQFDLQTILILSMLFVGASHSQSSAMFPAGSIQSMSNGVGLVSAPFLISNVPNNKNCLQRDLINELHEAGIYDYAQSLGIIQNGVIVVQNELWPGAGAYSLPISNGTPTTYPQFNPCPSVPLVSVDTGSNGSSSRGSDGAMARLASDNIMARLNHLDAEGDEFESPGTVGRKRRRIHRSSIGVTGGRGLRHFSMKVCKKVESKGWTTYNEVASELVAEFVNPNSTHFSQDQQQFDEKNIRRRVYDALNVLMAMDIISKEKKEIRWKGLPTTNLSDIERLKTERKRLTNRIDKKKAYLQELKEQITGLQNLVQRNERVYGSGNSPSGGVTLPFILVKTRPHATVDIEISEDMQLVHFDFNSTPFELHDDAFVLKAMRFCKTPDSNGPVDEKPDNEFMKNYSVLSTMHRGTSSPHSTRTSDTDSYSLSSIPGKICSSSPDPGIIKTRIKNENFI*

Protein Length: 457

Fln nts: ATGGGGAGAATGACCTTTTTATCTCGTGAGCTGGTTAACTGTCCTGCACACTTTCTCAGTATTGGAATAGCTATGAGTAGTATACTGTAGAGAATATTGTGTGTTGATTCCTCCTTCTTCTACTGAAATCCCGATTGAAATGGTGTCTGCTCATGGGGTTTTAGG_-_ATGACCCAAGTGCAGTTTGATCTCCAAACGATCTTAATCTTGTCAATGCTCTTTGTGGGTGCGTCTCATTCTCAGTCTTCCGCCATGTTTCCTGCAGGTTCAATCCAGAGTATGAGCAACGGAGTTGGGCTGGTATCAGCTCCTTTCTTAATTTCAAATGTACCCAACAACAAGAATTGTCTGCAGAGGGATCTTATAAATGAGCTTCATGAAGCTGGCATCTATGATTATGCTCAGAGTCTGGGAATTATTCAGAATGGGGTTATTGTTGTGCAAAATGAGTTATGGCCAGGGGCGGGTGCGTATTCGTTGCCTATCTCTAATGGGACACCTACCACTTATCCACAATTTAACCCATGCCCATCAGTGCCATTGGTTTCTGTGGATACTGGAAGTAATGGTTCTTCATCAAGAGGTAGTGACGGGGCCATGGCCAGACTTGCATCAGACAATATCATGGCGAGGTTGAACCATTTGGATGCTGAAGGGGACGAATTTGAGTCTCCAGGGACAGTAGGGAGGAAGAGAAGACGAATTCATCGATCCAGTATTGGTGTAACTGGTGGCAGAGGACTCCGGCATTTCAGCATGAAAGTTTGTAAGAAAGTGGAGAGCAAGGGCTGGACAACATACAACGAGGTTGCATCTGAATTAGTGGCTGAATTTGTGAATCCAAACAGCACACATTTTTCACAAGATCAGCAACAGTTTGATGAGAAGAACATTAGGAGGAGGGTGTATGATGCACTGAACGTATTGATGGCCATGGACATAATATCAAAGGAGAAGAAGGAGATTAGATGGAAAGGGCTACCTACAACAAATCTAAGTGACATTGAAAGGCTAAAGACTGAGCGAAAGAGGTTGACAAATAGGATTGACAAAAAGAAGGCTTATTTACAGGAACTCAAAGAACAGATAACAGGCCTTCAAAATCTAGTACAGCGGAATGAAAGAGTATATGGGTCAGGCAATAGTCCTTCTGGAGGTGTGACATTACCATTCATATTGGTGAAGACTCGTCCCCATGCAACTGTTGACATTGAGATCTCAGAAGACATGCAGCTAGTTCACTTCGACTTCAATAGTACACCATTTGAATTACATGATGATGCATTTGTGCTGAAAGCAATGCGATTTTGCAAAACACCAGATAGTAATGGTCCAGTCGATGAAAAGCCAGACAACGAATTTATGAAAAATTACTCAGTTCTATCAACCATGCACAGGGGTACCTCATCCCCTCATTCAACAAGGACAAGTGATACAGATTCCTATTCTCTCTCAAGTATTCCTGGGAAAATCTGCTCTTCCTCCCCTGACCCAGGCATAATAAAAACACGTATTAAGAACGAGAACTTTATATGA___TGGTCCATGAGCTTGTTGCCAAGCAGCTTCAGCTTTGTACTAGTAAGTGCTCCTGCTCTGATGGGAGTCATACTCAAACCGAGTTTATATGTATTGCTTCTTTTCATTTATACCTGCTTGTCATTACTTGTATAGTATATATGTTTCAGCATGTGGGCTACCTGTTAGCCCAAGCGGGAAGAGTTATATGTTGAATTGAGAGAGTAAGAAATGTACATTATTGTGATATAAAGAGGAATTTTCTTTATATTCCAAACTGTCCTATTAGGACATTAAGCAGTCATTTATAGACTTTATGCAGTCTATTCGTGTACTGAGCTCTTCAGTTAAAACCGGAAATATGTTCAATGTTGAACAACGAGGATCACACAGATTGACCCTCTTTTTTTCAGGTCGAGAGGATTTCCTTGATTCGAGTTTTGATGTCTGTTAATAAGTTAAAGCAACTTATTTTCATTTGCATGCTTGTTAAAATTTATACATCGAGGCTAGACTACTTAGAGGGATGAGATTGGACTTGTATGTTTCTCAGATTTGGGCTAGGTGGCCAGGACTTTGTATATTATTTGTTGTTTCCTATATATGAACTGTTACATGCCCTAGTGGCTATGTTTAC

Fln Alignment:

Contig5699___MLFVGASHSQSSAMFPAGSIQSMSNGVGLVSAPFLISNVPNNKNCLQRDLINE--------LHEAGIYDYAQSLGIIQNGVIVVQ-----NELWPGA----GAYSLPISNGTPTTYPQFNPCPSVPLVSVDTXXXXXXXXXXXXAMARLASDNIMARLNHLDAEGDEFESPGTVG-RKRRRIHRSSIGVTGGRGLRHFSMKVCKKVESKGWTTYNEVASELVAEFVNPNSTHFSQDQQQFDEKNIRRRVYDALNVLMAMDIISKEKKEIRWKGLPTTNLSDIERLKTERKRLTNRIDKKKAYLQELKEQITGLQNLVQRNERVYGSGNSPSGGVTLPFILVKTRPHATVDIEISEDMQLVHFDFNSTPFELHDDAFVLKAMRFCKTPDSNGPVDEKPDN-----EFMKNYSVLSTMHRGTSSPHSTRTSDTDSYSLSSIPGKICSSSPDPGIIKTRIKNE
D5ABL1______________MLPRGPSRRGGSTTGPRSGVRSRKTTI----TQSHVANNPNNTSSYNNSSISNSNGVHNDPIHEAGIHSYAEGLGIVQNGAIATPIGMNATEYNPDAAKEEGEYPSTISNGMVGGYSGNLTSLPGQSVSMDSGSNCSPSRGSDVVMATPGPSSAFARLHHLDGQGEDFESPDTVGTRKKKRGPRAIGGEKGGRGLRQFSMKVCQKVESKGRTTYNEVADELVAEYANPNSALISPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPSTSPNDLEHLKADRMGLRSRIEKKMGYLQELEDQIIGLQNLVKRNERLYGSGNTPSGGVALPFILVQTRPQATVEIEISEDMQLVHFDFNSTPFELHDDAYVLKAMGFCEKPFTDGMDVTGHDSFANGAGFGENNIPITNMYRHSLPSHLRTTG--GSFSMSCATGKNCTSPPVPGILKARVKHE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1094	12	87			0.992554
1115	85	14			0.993533
1301		66		33	0.997452
1312	75			25	0.996473
1313	75		25		0.996473
1314		75		25	0.996473
1388	75		25		0.996473
1606	80		20		0.995493
1803	25		75		0.996473
1827	20			80	0.995493
1828	20	40		40	1.0
1830	80		20		0.995493
1843		20	80		0.995493
1869	50		50		1.0
1990	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain