SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5683

Length: 2180 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene5683
GAGACGAGGCTTGGACATTACTGATCCAGCAAAGGCTGTAACCTAAATGCTCTAACAATTCTTCAAGTGTTTCTTTATAGAACGTCCTGATCTTAAGATTTGAGAGCCCATCTAAGCCAGCAGTTTGTCTGGGGCCTGAAATCATTGATGGGCGTTTCCAAATTGGAAAACTAGCCTCTGGTTCCTGTGATTGGCTAAGCAGCAATTCGTATACCAATTCGAATTTAGGCCCGAGAGGATCATGTCTGCAAAGGTTGAGATGTGTGGTGGTGGTGTGGAAGTAGCAGAGATTGGAGGAAGGCCCGTCCTGCAACCGGCCTGCAACAGGGTTGCGAGGGCCAATGAAGGCAACAATGTGAAGCCCATAATTAGGAAATCTCTTAAGCCTTCTCCTCCTCCTGCCCCAAAGACCTCAAAGCCTCCTTGCCTGCAAAATGTCCCTTCAAAGACTCAGAACAAGTCTCCTTCCCCTCCGTCAAGCCCATCTGCCAAGGGCGGACTGCTCACAATTCCATCAAAGCATTCATTGCCCAGAACCCAGGTGAAGCCACCAGCAATTACTAAGCAATCAGAGACACCTTCTCCTCCTCTTTCTCCTTCTTCTCCTGTTTCAAATCCCATATCCAAAGAGCCTACAACACCCATGAAGCTGTCTCCTCCCATTTCTCCAAAGAGTCGAACTAAATCTGCAAAGCCCACATCGTTGATTGTCAGGCCTTCCTCCCAGAGGGCTCTGCTCAAGAGATCCAATGACACGGCCTCCTTGAACGTAAGCACAGACAAGCAGGCTGGCAATGAAGCAGCCACACCTAAAGTTGCCAGTCCCAAGGCTGCTTCTGTGAAGATAAGCATCAATGGAAGGAAGAAATCTCGTAAACTGGGAGCTGTGGAGGCCTCTGCTCCATCCACAAGGGTCCCTGGAAGCTTGGCTGCTGCAAGGAAGGCGGAAATATCAGAGCTTCATGCACAGAGAAAGCTAAGGATTGCGCATTACGGCCGAAAACAGGGGACTCCCAAGTCTGAGAAACTTGTTCCCGAAGACGTGGCTTCCGCTGCTCCAATTTCTGAGGAGATTAGGAGATGCAGTTTCATCTCTTCACAGAGTGATCCGGCTTATGTAGCTTATCACGATCAAGAATGGGGTGTGCCTGTTCATGATGACAAAATGCTATTTGAGCTCTTGTCTCTGATGGGTGCACAGGTGGGAATGAATTGGCCCACGATATTGAGCAAGCGTGAAGCCTTTAGAGATGCATTTGCTGGTTTTGATCCCACCATTGTGGCAACCTTCAATGAGAGGAAAATTGCATCAATCAGTACAGAGCATGATATCATGGATGTAGCCAAAATGAGAGGGATAGTAGAGAATGCCAAACAAATTCTTGAGATTGAACGAGAATTCGGTTCATTTGACAGATACATATGGAACTTTGTGAATTTCAAGCCCATTGTGAACAAGCACAAGCATGCGAGGACCATTCCTGTGAAGTCATCCAAAGCAGAATCTATTAGCAAGGATCTGGTGAAGCGAAATTTCCGCTTTGTTGGCCCGACAATCATGTACTCCTTCATGCAAGCTGCAGGCCTGACTAATGATCATCTTGTAAATTGCTTCAGACATGAAGAATGCCTAAGATTATCCCAGCAAGAGAGCTGCTGCAACTAGAGTGAATTCCAGTGACCAATGTTACAAAATCAGCTAACTGTAATGTTTTTTAACTAGGCTATTAAGATGCTTATGACAGAGGCTGCTCTTAGTGAACATCCATCTCCATATTTAAACAAATGTGAGTGGAGAGTGAGGCTTCTATTGACCCAGTGACAGCAGCAGTAGTTGGTGTGCATTCTTGGATTGACTTCTTTGTATATGTTAAGTATTGTACTCTAGGTGTTGTACTCTATACAAAAGTAAAAACAGATATCCATATAGATTGCAGTAGAAGCTCTGAAGAAATACAAACAGTTTCAGCCGTGTTCTATTTGTTATTTTAAGATTTTTACAGCTTGACATTTTCTTTATACCACCATATGTTGGGAGAGGATCTTCAGTTTCTCCCGTGTGTTGTAATGGTGGTGATGTAGCAGTGCTCTTTAACTTGACCACTAAGGAAATGACCTTGTACTTTGTTGATGACAGAATTGGTTAATCTTATTTCTATGAATGATTGGTTTTAACCAAA

Ace file of the UniGene sp_v3.0_unigene5683 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-3-methyladenine glycosylase I [Arabidopsis thaliana] dbj\|BAB08821.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAO41948.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50465.1\| unknown protein [Arabidopsis thaliana] gb\|AED95146.1\| DNA-3-methyl	-	-	0.0	44%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	50%
Sma3	DNA-3-methyladenine glycosylase, putative	-	-	3.912e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:3.2.2.2-	-	4.192e-20	-

Source	Gene names
Sma3	At3g12710; At5g44680; At5g57970; F21F23.7; F9E10.6; GSVIVT00014671001; GSVIVT00017224001; GSVIVT00021072001; GSVIVT00037647001; H0311C03.4; OSJNBa0029H02.23; Os01g0799500; Os06g0649800; Os08g0489300; OsI_04083; OsI_23919; OsI_29689; OsJ_03762; OsJ_15351;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA-3-methyladenine glycosylase activity	GO:0008725	Molecular Function	0.0	-
Sma3	base-excision repair	GO:0006284	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Methyladenine glycosylase	IPR005019	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12710.1	DNA glycosylase superfamily protein chr3:4040572-4041828 REVERSE LENGTH=312	48%
RefSeq	Arabidopsis thaliana	NP_566433.1	DNA-3-methyladenine glycosylase I [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002303720.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GYH6

Fln msg: your sequence is longer than subject: 475 - 354

Fln protein: MSAKVEMCGGGVEVAEIGGRPVLQPACNRVARANEGNNVKPIIRKSLKPSPPPAPKTSKPPCLQNVPSKTQNKSPSPPSSPSAKGGLLTIPSKHSLPRTQVKPPAITKQSETPSPPLSPSSPVSNPISKEPTTPMKLSPPISPKSRTKSAKPTSLIVRPSSQRALLKRSNDTASLNVSTDKQAGNEAATPKVASPKAASVKISINGRKKSRKLGAVEASAPSTRVPGSLAAARKAEISELHAQRKLRIAHYGRKQGTPKSEKLVPEDVASAAPISEEIRRCSFISSQSDPAYVAYHDQEWGVPVHDDKMLFELLSLMGAQVGMNWPTILSKREAFRDAFAGFDPTIVATFNERKIASISTEHDIMDVAKMRGIVENAKQILEIEREFGSFDRYIWNFVNFKPIVNKHKHARTIPVKSSKAESISKDLVKRNFRFVGPTIMYSFMQAAGLTNDHLVNCFRHEECLRLSQQESCCN*

Protein Length: 476

Fln nts: GAGACGAGGCTTGGACATTACTGATCCAGCAAAGGCTGTAACCTAAATGCTCTAACAATTCTTCAAGTGTTTCTTTATAGAACGTCCTGATCTTAAGATTTGAGAGCCCATCTAAGCCAGCAGTTTGTCTGGGGCCTGAAATCATTGATGGGCGTTTCCAAATTGGAAAACTAGCCTCTGGTTCCTGTGATTGGCTAAGCAGCAATTCGTATACCAATTCGAATTTAGGCCCGAGAGGATC_-_ATGTCTGCAAAGGTTGAGATGTGTGGTGGTGGTGTGGAAGTAGCAGAGATTGGAGGAAGGCCCGTCCTGCAACCGGCCTGCAACAGGGTTGCGAGGGCCAATGAAGGCAACAATGTGAAGCCCATAATTAGGAAATCTCTTAAGCCTTCTCCTCCTCCTGCCCCAAAGACCTCAAAGCCTCCTTGCCTGCAAAATGTCCCTTCAAAGACTCAGAACAAGTCTCCTTCCCCTCCGTCAAGCCCATCTGCCAAGGGCGGACTGCTCACAATTCCATCAAAGCATTCATTGCCCAGAACCCAGGTGAAGCCACCAGCAATTACTAAGCAATCAGAGACACCTTCTCCTCCTCTTTCTCCTTCTTCTCCTGTTTCAAATCCCATATCCAAAGAGCCTACAACACCCATGAAGCTGTCTCCTCCCATTTCTCCAAAGAGTCGAACTAAATCTGCAAAGCCCACATCGTTGATTGTCAGGCCTTCCTCCCAGAGGGCTCTGCTCAAGAGATCCAATGACACGGCCTCCTTGAACGTAAGCACAGACAAGCAGGCTGGCAATGAAGCAGCCACACCTAAAGTTGCCAGTCCCAAGGCTGCTTCTGTGAAGATAAGCATCAATGGAAGGAAGAAATCTCGTAAACTGGGAGCTGTGGAGGCCTCTGCTCCATCCACAAGGGTCCCTGGAAGCTTGGCTGCTGCAAGGAAGGCGGAAATATCAGAGCTTCATGCACAGAGAAAGCTAAGGATTGCGCATTACGGCCGAAAACAGGGGACTCCCAAGTCTGAGAAACTTGTTCCCGAAGACGTGGCTTCCGCTGCTCCAATTTCTGAGGAGATTAGGAGATGCAGTTTCATCTCTTCACAGAGTGATCCGGCTTATGTAGCTTATCACGATCAAGAATGGGGTGTGCCTGTTCATGATGACAAAATGCTATTTGAGCTCTTGTCTCTGATGGGTGCACAGGTGGGAATGAATTGGCCCACGATATTGAGCAAGCGTGAAGCCTTTAGAGATGCATTTGCTGGTTTTGATCCCACCATTGTGGCAACCTTCAATGAGAGGAAAATTGCATCAATCAGTACAGAGCATGATATCATGGATGTAGCCAAAATGAGAGGGATAGTAGAGAATGCCAAACAAATTCTTGAGATTGAACGAGAATTCGGTTCATTTGACAGATACATATGGAACTTTGTGAATTTCAAGCCCATTGTGAACAAGCACAAGCATGCGAGGACCATTCCTGTGAAGTCATCCAAAGCAGAATCTATTAGCAAGGATCTGGTGAAGCGAAATTTCCGCTTTGTTGGCCCGACAATCATGTACTCCTTCATGCAAGCTGCAGGCCTGACTAATGATCATCTTGTAAATTGCTTCAGACATGAAGAATGCCTAAGATTATCCCAGCAAGAGAGCTGCTGCAACTAG___AGTGAATTCCAGTGACCAATGTTACAAAATCAGCTAACTGTAATGTTTTTTAACTAGGCTATTAAGATGCTTATGACAGAGGCTGCTCTTAGTGAACATCCATCTCCATATTTAAACAAATGTGAGTGGAGAGTGAGGCTTCTATTGACCCAGTGACAGCAGCAGTAGTTGGTGTGCATTCTTGGATTGACTTCTTTGTATATGTTAAGTATTGTACTCTAGGTGTTGTACTCTATACAAAAGTAAAAACAGATATCCATATAGATTGCAGTAGAAGCTCTGAAGAAATACAAACAGTTTCAGCCGTGTTCTATTTGTTATTTTAAGATTTTTACAGCTTGACATTTTCTTTATACCACCATATGTTGGGAGAGGATCTTCAGTTTCTCCCGTGTGTTGTAATGGTGGTGATGTAGCAGTGCTCTTTAACTTGACCACTAAGGAAATGACCTTGTACTTTGTTGATGACAGAATTGGTTAATCTTATTTCTATGAATGATTGGTTTTAACCAAA

Fln Alignment:

Contig5683___PMKLSPPISPKSRTKSAKPTSLIVRPSSQRALLKRSNDTASLNVSTDKQAGNEAATPKVASPKAASVKISINGRKKSRKLGAVE-ASAPSTRVPGSLAAARKAEISELHAQRKLRIAHYGRKQGTPKSEKLVPEDVASAAPISEEIRRCSFISSQSDPAYVAYHDQEWGVPVHDDKMLFELLSLMGAQVGMNWPTILSKREAFRDAFAGFDPTIVATFNERKIASISTEHDIMDVAKMRGIVENAKQILEIEREFGSFDRYIWNFVNFKPIVNKHKHARTIPVKSSKAESISKDLVKRNFRFVGPTIMYSFMQAAGLTNDHLVNCFRHEECLRLSQQ
B9GYH6______________PSALSPPISPK--LKSPRPPAV-----------KRGNEPGGLNTSAEKVLTPRSTTKVTTSTVKKSKKSSTAGVPHSVDTFAMKYSSSLLVEAPGSIAAARREQVAAMQEQRKMRIAHYGRTKSAKYQGKIVPANSPATSTITREEKRCSFITPNSDPVYVAYHDEEWGVPVHDDKLLFELLALTGAQVGSEWTSVLKKREAFREAFSGFDAEIVAKFTEKKIASISAEYG-LDISQVRGVVDNSNRILEVKREFGSFDEYLWGYVNHKPISTQYKSCQKIPVKTSKSETISKDMVKRGFRFVGPTVIHSFMQAGGLSNDHLITCPRHLQCIALASQ

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1403		11		88	0.923564
1454		88	11		0.923564
1512		12		87	0.992554
1716	66			33	0.997452
1721	20		80		0.995493
1722	80			20	0.995493
1723		80	20		0.995493
1910		85		14	0.993533
1945	11	88			0.923564
1947	11			88	0.923564
1948		88		11	0.923564
1956		11		88	0.923564
1957	88	11			0.923564
1958	88	11			0.923564
2003	11	88			0.923564
2004	77			22	0.999999
2005			88	11	0.923564
2056	15	84			0.999986
2086		81		18	0.999994
2128		10		90	0.90298
2153		14		85	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1906	1917	CAC CAC CAC CAC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain