SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5670

Length: 2322 nt

UniGene Fasta

>sp_v3.0_unigene5670
ATGGGGGAAGATTCTGCATTACATTCCGCAATGGCCACCACCAGTTCACCTCTCCTCGCCATCGCCACCCCCAATTGGCGCTGAGGCCCTCCGCCAGAGCTTACCGCAATCTTCCTCCCCTTCGCCGCCACCTCCACCACAGCACCGCCACCGGCCGCCCCCTCCGACCTGCCTGATGGAACACAGTGGCGCTACAGCGAGTTCTTGAACGCCGTGAAGAAGGGTAAGGTGGAGCGCGTCCGCTTCAGCAAGGACGGCAGCTACCTACAGCTGAGCGCCGTCGACGGGAGGCGTGCCACTGTAACCCTGCCAAACGACCCGGACCTGGTGGACATCCTTGCGATGAATGGCGTGGACATATCGGTTTCCGAGGGGGAGGCGAACAATGGCCTCCTCAGCGTAATCGGTAATCTTTTATTCCCAATTTTAGCCTTCGGGGGTTTATTCTTCTTATTTCGGCGGGCTCAGGGAGGCCCTGGGGGTCCCGGAGGTTTGGGCGGCCCTATGGACTTCGGTCGCTCTAAGTCCAAGTTCCAGGAGGTGCCGGAGACTGGAGTTACATTTGCCGACGTGGCAGGCGCTGACCAGGCCAAGCTGGAGCTTCAGGAGGTGGTGGATTTCTTGAAAAACCCTGATAAGTATACTGCCCTTGGTGCCAAGATCCCCAAGGGATGCTTGTTGGTAGGTCCGCCGGGGACGGGCAAGACTCTGCTGGCCCGGGCTGTCTCAGGGGAGGCCGGGGTCCCCTTCTTTTCCTGCGCAGCGTCGGAGTTCGTCGAGCTCTTCGTCGGTGTAGGTGCGTCCCGGGTACGGGACCTGTTCGAGAAGGCCAAGGCCAAGGCGCCCTGCATCGTCTTTATCGATGAAATTGACGCGGTAGGGAGGCAAAGGGGGGCTGGGCTTGGCGGCGGTAATGATGAAAGGGAGCAGACAATCAATCAGCTGTTGACGGAGATGGACGGGTTCTCTGGGAACAGCGGGGTTATTGTTCTTGCGGCGACGAATCGGCCGGATGTTCTGGATTCAGCTTTGTTGCGGCCGGGCCGGTTTGATAGGCAGGTCACCGTAGACAGGCCGGACGTTGCCGGGAGAGTGAGGATCCTGCAGGTCCACTCAAGAGGCAAAGCATTGGCAAAGGATGTAGATTTTGAGAAAATTGCAAGGAGGACACCAGGCTTCACTGGTGCTGATTTGCAAAATCTAATGAATGAAGCTGCTATTCTTGCTGCTAGAAGAGAATTGAAGGAGATTAGCAAAGATGAAATTGCAGATGCTCTAGAAAGAATCATTGCTGGTCCTGAGAAGAAGAACGCTGTCGTGTCAGAAGAGAAGAAAAAACTTGTAGCATATCACGAGGCTGGTCATGCCCTTGTGGGTGCACTTATGCCAGAGTATGATCCTGTTGCTAAAATTTCAATCATTCCTCGTGGACAAGCTGGAGGCCTGACATTCTTTGCTCCTAGTGAAGACAGACTGGAATCTGGGCTTTACAGCAGAAGTTACCTTGAGAATCAGATGGCAGTTGCCCTCGGTGGAAGGGTGGCAGAAGAAGTTATTTTTGGGAAAGAAAATGTCACAACAGGAGCATCGAATGACTTCCAACAAGTATCTCGTGTTGCTCGGCAGATGGTTGAAAGACTTGGTTTTAGCAAGAAGATTGGACAACTATCCCTTGGAGGGGGTGGTGGAAATCCTTTTTTGGGGCAGCAAATGTCCCCGCAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGATCTTCTCATAGAGAAGGAATCTGTAGACGGTGAGGAATTCATGAGCCTGTTTATAGATGGCAAGGCCGAACTCTATGTGGGTTAGTTTTCCGAAAGTCGGTGTATTTATAACAAATAAAACAATTTTTTTGGGGTTAATTGAGAAAAGACAGGTATACAATAATCATCCCAAAATGTATGTAAAGAGTAGTCTCTATACCGGAGGCATGATACTGATGCAAAAAGTGCCCATGTCCTCAACATGTACTAAGGAGAGGGTATGATGAAAGTCTGCCGCCATGCTCTAACAGACTAGTTTCAAACTTTTCATTGTTGTACACTAAATGGTCAGACTATTCATCCATGTAACATCTCGGAAAAATGGTCATTGTATTAGGCTTCGAGGTCATGGATTTATTGCAGATACAGATAATTCTTTTGCTCCTATATTGAATACAAGAGGCTTATCTACATACATTATCTTTCTCTAGTGGGT

Ace file of the UniGene sp_v3.0_unigene5670

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Precursor of protein cell division protease ftsh-like protein n=4 Tax=Magnoliophyta RepID=B9GQ31_POPTR	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Sma3	Chromosome chr18 scaffold_1, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00015560001;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Peptidase, FtsH	IPR005936	-	-
Sma3	Peptidase M41, FtsH extracellular	IPR011546	-	-
Sma3	Peptidase M41	IPR000642	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G42270.1	VAR1, FTSH5 FtsH extracellular protease family chr5:16902659-16905102 FORWARD LENGTH=704	92%
RefSeq	Arabidopsis thaliana	NP_568604.1	cell division protease ftsH-5 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002301927.1	precursor of protein cell division protease ftsh-like protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ75

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 644 - 695

Fln protein: MGEDSALHSAMATTSSPLLAIATPNWR*GPPPELTAIFLPFAATSTTAPPPAAPSDLPDGTQWRYSEFLNAVKKGKVERVRFSKDGSYLQLSAVDGRRATVTLPNDPDLVDILAMNGVDISVSEGEANNGLLSVIGNLLFPILAFGGLFFLFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEDRLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFQQVSRVARQMVERLGFSKKIGQLSLGGGGGNPFLGQQMSPQKDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLADLLIEKESVDGEEFMSLFIDGKAELYVG*

Protein Length: 645

Fln nts: ATGGGGGAAGATTCTGCATTACATTCCGCAATGGCCACCACCAGTTCACCTCTCCTCGCCATCGCCACCCCCAATTGGCGCTGAGGCCCTCCGCCAGAGCTTACCGCAATCTTCCTCCCCTTCGCCGCCACCTCCACCACAGCACCGCCACCGGCCGCCCCCTCCGACCTGCCTGATGGAACACAGTGGCGCTACAGCGAGTTCTTGAACGCCGTGAAGAAGGGTAAGGTGGAGCGCGTCCGCTTCAGCAAGGACGGCAGCTACCTACAGCTGAGCGCCGTCGACGGGAGGCGTGCCACTGTAACCCTGCCAAACGACCCGGACCTGGTGGACATCCTTGCGATGAATGGCGTGGACATATCGGTTTCCGAGGGGGAGGCGAACAATGGCCTCCTCAGCGTAATCGGTAATCTTTTATTCCCAATTTTAGCCTTCGGGGGTTTATTCTTCTTATTTCGGCGGGCTCAGGGAGGCCCTGGGGGTCCCGGAGGTTTGGGCGGCCCTATGGACTTCGGTCGCTCTAAGTCCAAGTTCCAGGAGGTGCCGGAGACTGGAGTTACATTTGCCGACGTGGCAGGCGCTGACCAGGCCAAGCTGGAGCTTCAGGAGGTGGTGGATTTCTTGAAAAACCCTGATAAGTATACTGCCCTTGGTGCCAAGATCCCCAAGGGATGCTTGTTGGTAGGTCCGCCGGGGACGGGCAAGACTCTGCTGGCCCGGGCTGTCTCAGGGGAGGCCGGGGTCCCCTTCTTTTCCTGCGCAGCGTCGGAGTTCGTCGAGCTCTTCGTCGGTGTAGGTGCGTCCCGGGTACGGGACCTGTTCGAGAAGGCCAAGGCCAAGGCGCCCTGCATCGTCTTTATCGATGAAATTGACGCGGTAGGGAGGCAAAGGGGGGCTGGGCTTGGCGGCGGTAATGATGAAAGGGAGCAGACAATCAATCAGCTGTTGACGGAGATGGACGGGTTCTCTGGGAACAGCGGGGTTATTGTTCTTGCGGCGACGAATCGGCCGGATGTTCTGGATTCAGCTTTGTTGCGGCCGGGCCGGTTTGATAGGCAGGTCACCGTAGACAGGCCGGACGTTGCCGGGAGAGTGAGGATCCTGCAGGTCCACTCAAGAGGCAAAGCATTGGCAAAGGATGTAGATTTTGAGAAAATTGCAAGGAGGACACCAGGCTTCACTGGTGCTGATTTGCAAAATCTAATGAATGAAGCTGCTATTCTTGCTGCTAGAAGAGAATTGAAGGAGATTAGCAAAGATGAAATTGCAGATGCTCTAGAAAGAATCATTGCTGGTCCTGAGAAGAAGAACGCTGTCGTGTCAGAAGAGAAGAAAAAACTTGTAGCATATCACGAGGCTGGTCATGCCCTTGTGGGTGCACTTATGCCAGAGTATGATCCTGTTGCTAAAATTTCAATCATTCCTCGTGGACAAGCTGGAGGCCTGACATTCTTTGCTCCTAGTGAAGACAGACTGGAATCTGGGCTTTACAGCAGAAGTTACCTTGAGAATCAGATGGCAGTTGCCCTCGGTGGAAGGGTGGCAGAAGAAGTTATTTTTGGGAAAGAAAATGTCACAACAGGAGCATCGAATGACTTCCAACAAGTATCTCGTGTTGCTCGGCAGATGGTTGAAAGACTTGGTTTTAGCAAGAAGATTGGACAACTATCCCTTGGAGGGGGTGGTGGAAATCCTTTTTTGGGGCAGCAAATGTCCCCGCAAAAGGATTATTCTATGGCAACTGCAGATATTGTTGATTCGGAAGTCAGAGAGCTTGTTGAGAAGGCCTATGAAAGGGCTAAGACGATAATCACAACACAGATTGATATTCTTCACAAGTTAGCAGATCTTCTCATAGAGAAGGAATCTGTAGACGGTGAGGAATTCATGAGCCTGTTTATAGATGGCAAGGCCGAACTCTATGTGGGTTAG___TTTTCCGAAAGTCGGTGTATTTATAACAAATAAAACAATTTTTTTGGGGTTAATTGAGAAAAGACAGGTATACAATAATCATCCCAAAATGTATGTAAAGAGTAGTCTCTATACCGGAGGCATGATACTGATGCAAAAAGTGCCCATGTCCTCAACATGTACTAAGGAGAGGGTATGATGAAAGTCTGCCGCCATGCTCTAACAGACTAGTTTCAAACTTTTCATTGTTGTACACTAAATGGTCAGACTATTCATCCATGTAACATCTCGGAAAAATGGTCATTGTATTAGGCTTCGAGGTCATGGATTTATTGCAGATACAGATAATTCTTTTGCTCCTATATTGAATACAAGAGGCTTATCTACATACATTATCTTTCTCTAGTGGGT

Fln Alignment:

Contig5670___YSEFLNAVKKGKVERVRFSKDGSYLQLSAVDG------RRATVTLPN-DPDLVDILAMNGVDISVSEGEANNG--LLSVIGNXXXXXXXXXXXXXXXRRAQXXXXXXXXXXXXMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVSGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKAKAPCIVFIDEIDAVXXXXXXXXXXXNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRELKEISKDEIADALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEDRLESGLYSRSYLENQMAVALGGRVAEEVIFGKENVTTGASNDFQQVSRVARQMVERLGFSKKIXXXXXXXXXXXXXXXXXMSPQKDYSMATADIVDSEVRELVEKAYERAKTIITTQIDILHKLADLLIEKESVDGEEFMSL
C0PQ75______________YSRFLEYLDKDRVKKVDLFENGTIAIVEAVSPELGNRIQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSVILNLIGNLAFPLILVGGLFLLSRRSSGGMGGPGGPGFPLSFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDAALLRPGRFDRQVSVDVPDVKGRTEILKVHGGNKKFDSDVSLGVIAMRTPGFSGADLANLLNEAAILAGRRGRSAISAKEIDDSIDRIVAGME-GTIMTDGKNKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPGDD---PTLISRQQLFARIVGGLGGRAAEQVIFGESEVTTGAASDLQMVTSMAKQMVTVFGMS-EIGPWSLMDAAQSGDVIMRMMARNSMSEKLAEDIDEAVKSLSDQAYEVALGHIRNNRAAIDKIVEVLLEKETMTGDEFRAL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
344	90		10		0.90298
401	16		83		0.994512
402		16		83	0.994512
404	83			16	0.994512
448		50		50	1.0
671	14		85		0.993533
708		83		16	0.994512
763	33		66		0.997452
772	20		80		0.995493
774			20	80	0.995493
775		80		20	0.995493
846	25	75			0.996473
847	25	75			0.996473
850		75		25	0.996473
921	66		33		0.997452
1030			14	85	0.993533
1462			10	90	0.90298
1473			90	10	0.90298
1474	90			10	0.90298
1520	11		88		0.923564
1535	14		85		0.993533
1536		14	85		0.993533
1538	85			14	0.993533
1539			85	14	0.993533
1590		83		16	0.994512
1684		15		84	0.999986
1887	1			94	0.95615
1891			94	5	0.999997
1965	88			11	0.923564
1971	83			16	0.994512
1976	33			66	0.997452
2166		84	16		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain