SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5669

Length: 1882 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5669

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative integral membrane protein n=4 Tax=Malvoideae RepID=B2ZAP4_9ROSI	-	-	0.0	69%
FL-Next	sp=GDP-mannose transporter GONST3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Sma3	GDP-mannose transporter, putative	-	-	1.526e-08	-

Source	Gene names
Sma3	At1g76340; At5g19980; F15M4.16; GSVIVT00004097001; GSVIVT00016826001; GSVIVT00029942001; GSVIVT00035195001; LOC_Os03g11590; OJ1014_H11.22; OSJNBb0079G12.18; Os02g0154600; Os03g0215000; Os08g0203900; OsI_05898; OsI_05900; OsI_10524; OsI_28203; OsI_28990; O

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	UAA transporter	IPR013657	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76340.1	GONST3 golgi nucleotide sugar transporter 3 chr1:28635188-28636306 REVERSE LENGTH=372	74%
RefSeq	Arabidopsis thaliana	NP_177760.1	golgi nucleotide sugar transporter 3 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002311722.1	predicted protein, partial [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9S845

Fln msg:

Fln protein: MSSTSPERTGDYGGEKNLELFEQIQKPWYAKFQAVWQSASIYGIAAGYCISASLLSIINKWAIMKFPYPGALTALQYLTSVVAVLILGQLNLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGESLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAYSWALAYLVSMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFLLFPLELIIMGELKKLKQDSTNESDWHSVGVLLPVGLSCLFGLSISFFGFSCRKVISATGFTVLGIVNKLLTVVINLVIWDNHATFIGTIGLLICMLGGILYQQSVSKPPPTASEPATNDDEEQLLELPSSELKAFGNEVVPTGPK*

Protein Length: 374

Fln nts: ATGGGGGTTTTAAGATGTCATTTGCATGACGTCGTGACCTTGGCTGTCACTCAATACTCAGCCGTAGAAACACCGGTGCCTCAGAAGCGGCACTGAAGACGGATCCCCACTCCGCTCACATGTCTGTTCTCTGTAACAACCGAGATCGATTCGGCAAAAGAAACTACTATCGCTTTCCTAGTTAAGGGTGGATCCTTTGATTAATGTGGATTTTGAATTATTGTTTCAAAG_-_ATGTCTTCAACATCACCTGAGAGAACAGGAGATTATGGTGGAGAGAAGAATTTAGAGCTCTTTGAACAAATTCAGAAGCCATGGTATGCGAAATTTCAAGCAGTGTGGCAGAGTGCTTCTATTTATGGAATTGCAGCTGGGTACTGCATTTCTGCTTCTTTGTTATCAATCATCAACAAGTGGGCAATCATGAAGTTTCCATACCCAGGAGCTTTGACAGCTTTACAATATTTGACAAGTGTAGTGGCTGTCCTGATTCTTGGCCAGTTAAATTTACTGGAACATGATAAAGTTGTCCTTCATACAATGTGGAGATTTCTACCTGCTGCTTTAATTTTCTACCTATCTCTATTTACAAATAGTGAGTTGCTACTGCATGCAAATGTTGACACATTTATTGTGTTTCGTTCAGCTGTCCCTATATTTGTTGCCATTGGTGAAAGTTTGTACTTGAAGCAGCCTTGGCCTTCTGCTAAAACTTGGTGCTCACTAGCTATTATTTTTGGAGGTGGTGTGCTTTATGTTGTCACTGATTATCAATTTACCATCATGGCATATAGTTGGGCCTTGGCATATTTGGTAAGTATGTCGATAGACTTTGTCTATATAAAGCATGTAGTCATGACAATTGGGTTGAATACTTGGGGCTTAGTGCTGTACAATAACCTGGAAGCTTTTCTTCTTTTCCCATTGGAGTTAATTATTATGGGTGAGTTGAAGAAGTTGAAGCAGGATAGCACAAATGAATCTGATTGGCATTCAGTAGGAGTCTTGCTGCCAGTTGGGCTTTCCTGCTTGTTTGGATTGTCAATTTCATTTTTTGGATTTTCCTGTCGCAAGGTTATATCTGCAACAGGTTTTACTGTTTTAGGCATTGTGAACAAGCTTCTGACGGTGGTAATAAATCTTGTCATATGGGATAATCATGCAACATTTATAGGAACAATTGGGCTGTTAATTTGCATGCTTGGTGGAATTCTTTATCAACAGTCAGTGTCTAAGCCTCCACCCACTGCTTCTGAACCTGCCACAAATGATGATGAAGAACAGCTGTTAGAGTTACCATCCTCAGAATTGAAGGCCTTTGGAAATGAGGTGGTCCCAACAGGCCCTAAGTAA___CTTTGTTTGCTCTGTTAAATGTGAGAGCAAACTAGTTTTCAGGTCATAACTGGGAAGGAACATGTTTTTTGGAAGAGTAATTTCTTGGTGAATGAAGTTTCAGTTTGTAAGTTGACCATCTAGACTTGTACTTCTCAAAGTACAAGTATGGATTTGGTTTATTTTCAGCTTATGCTGAAATATTGGTGAATGATAATATTGGGTGTCCTTGCCTGCCCAGTGAGTACTTTGTATTCATTTAAAAAGTGTCTCCTTATCACTTAAGGACACTCTGTAAGGGAGACAGAAAGTTCCAAGTCAAGAACCATTTAAATTTCTGTCAAGAAACCAGTGCTGATCTTGCAAAAAGCCTTTGCAAGATATCACTTTTGCAGTTCTGTAACTGTTGCATATTTTCAGGATATCTTCCTATTAATGATAAGGATATAAAGGCTTATTCCTAAACAGTGTAACTGCATTTCTGGTGGGGATTATCTGCCCAAGCTGATCCAAACAATAACCATAAAACGGACAGTCTCAAATGTTCCAGCAC

Fln Alignment:

Contig5669___STSPERTGDYGGEKNLELFEQIQKPWYAKFQAVWQSASIYGIAAGYCISASLLSIINKWAIMKFPYPGALTALQYLTSVVAVLILGQLNLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGESLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAYSWALAYLVSMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFLLFPLELIIMGELKKLKQDSTNESDWHSVGVLLPVXXXXXXXXXXXXXXXXXRKVISATGFTVLGIVNKLLTVVINLVIWDNHATFXXXXXXXXXXXXXXXYQQSVSKPPPTASE
Q9S845______________STNDEENGTVIEVKNVP--EPSPETWYSVFL---RQASVYGVAAGYCLSASLLSIINKWAIMKFPYPGALTAMQYFTSAAGVLLCAQMKLIEHDSLNLLTMWRFLPAAMIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLHQPWPSVKTWGSLATIFGGSLLYVFTDYQFTIAAYSWALAYLVSMTIDFVYIKHVVMTIGLNTWGLVLYNNLEALLLFPLELLIMGELKKIKHEITDETDWYSLQVVLPVGLSCLFGLAISFFGFSCRRAISATGFTVLGIVNKLLTVVINLMVWDKHSTFVGTLGLLVCMFGGVMYQQSTIKKPNATQE

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1272	66		33		0.997452
1300		33	66		1.0
1302	20	80			0.995493
1305	80			20	0.995493
1340		16	83		0.994512
1342		83		16	0.994512
1344		83	16		0.994512
1348	83	16			0.994512
1349			83	16	0.994512
1351	83		16		0.994512
1352	83		16		0.994512
1354			33	66	1.0
1356		16		83	0.994512
1357	16		83		0.994512
1358		16		83	0.994512
1360		16		83	0.994512
1361	16		50	33	1.0
1554			85	14	0.993533
1566		85		14	0.993533
1782	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain