SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5662

Length: 2726 nt

UniGene Fasta

>sp_v3.0_unigene5662
ATGGGGACCCTTCTCAATGTGAGACAGAGAAGCAGCAGCATCAGCAGAACAGAAAATGGAGACAGAGATTGGCGAAGATCTAGAAATGAATTCTAGTGACAAAGGGCGCATGTGGTCTCTGGATCAGAAAATAGATCAACCCATTGAAGATAAAGAGGCCGGACATATCAGAGGCATGGACGTAAAGAAGGAGTTGTCGGGTTTGATGGTTCTGCGTCTTGCATTTCAGAGCCTAGGGGTTGTCTATGGAGACTTAGGCACATCTCCTCTATATGTTTTTAATAGCACATTTCCTGATGGTGTCCGCGATCGTGAAGATTTGATGGGGGCTCTTTCGTTAATCATATATACTTTGACGCTAATTCCTCTTCTGAAATATGTCTTTGTGGTCATGAGGGCCAATGACAACGGAGAAGGTGGAACATTTGCTCTGTATTCATTACTCTGTCGGCATGTTAAAGTGAACACTATTCCGAATCAACACCGCACAGATGAAGAACTCACAACTTATAGCAGGCGAAAGATTGAAGATAAGTCATTTGCTGCAAGAACAAAGAAATGGCTGGAAGCAAAAGTTGACCGTCAAAATGCACTTCTGCTTCTTGTACTTGTTGGCACTTGCATGGTCATCGGTGATGGAATTTTTACTCCTGCTATCTCAGTCCTTTCATCTGTTGGTGGTATCAAGGTAGACCACCCTAACATGAAAACTGCTGTAGTTGTGGCAGTTGCAGTGCTCATCTTGGTTATTCTATTTAGCGTACAGCATTATGGTACAGGCAAAGTTGGATGGCTATTTGCCCCAGCAGTTCTTCTTTGGTTCCTATGCATTGGAATTATTGGAGTTTATAATATATGTAAGCACGATACAGTTGTCTTAAAAGCTTTTTCTCCAGTTTATATAGTGAAGTATTTCAGAGTAGGGACGAAACGTAGCTGGGCTTCTCTAGGAGGGATTATGCTCAGTATAACAGGTACAGAAGCACTCTTTGCTGATTTAGGCCATTTTTCAACCTTAGCTGTTCAGATTGCATTCACATCAATTGTGTTTCCTTGCTTGCTTTTGCAATATATGGGACAAGCAGCATATCTTATGCACCATCAAGAAGATGTGAAAGAAGCCTTTTATAGGTCTATTCCAGACCCAGCTTATTGGCCAGTGTTTGTCATTGCAACCATCGCTGCTGTTATTGCCAGTCAGGCTACCATATCTGCTACCTTCACGATTATTAAGCAGGCGGTTGCACTTGGTTGTTTTCCACGAGTGAAGGTCCTTCATACTTCAAAAGACATCTCTGGACAGATTTACATTCCTGAAATTAATTGGATTCTCATGGTTCTTTGCATTATAGTTACCATTGCATTCAACAGCACAACTCAAATTGGAAATGCATATGGTACTGCAGTTATAGGTGTTATGCTGGTCACAACACTTTTGATGGCTCTTATCATGCTAATCGTCTGGAGGAGTAATTGGCTGCTAGTTTTACTATTTACTAGTTTCTTTTTGTCCATTGAGCTTGTATACTTCTCATCTGTGCTATTCAAGGTCAACCAAGGTGGTTGGGCTCCACTTGTGATTGCTGCTGTATTTCTTATTATCATGTCTGTCTGGCATTATGGTACTGTGAAAAGATATGAATTAGAATTAGAGAGCAAGGTTTCCATGGCATGGATTCTGGGTTTAGGCCCCAGCCTTGGTCTGGTTCGAGTTCCAGGGATTGGCCTTCTATATACAGAACTTGTGAATGGAGTGCCTCACATATTCTCGCATCTTATTACTCATCTTCCTGCAATACATTCTATTGTTGTATTTGTCTGTCTAAAATATCTTCCAGTTAATACTGTTCCACAAGAAGAACGTTTTCTTGTTAAGCGCATTGGGCCCAAGGACTTCCACATGTTTAGGTGTGTTGCTAGGTATGGTTATAAGGACTTGCACAAGAAGGATGATGACTTCGAGAAAATGCTCTTGGATAAATTGTCTGCATTTATCCGGCATGAATCACTAATGGAGAGTATCTCAGATTCAGAGGATTACAGCTTACCTGAAGAGTATCAACAAGAAACCACTTTAGACACAGAAAACGGAAATCAGATGTCTTTACACATTATCTCAACAGAATCATCGCAGAACTCAATTGTCTCTGAAAGATCCCCACAACAACCAGTTCGGCAACTCAGGTTTAGTGTTCCTAACACTGGAATTGTCCGCAACAGTGGAACTGTTGATGATGAAATACAATTTCTGAACGATTGCAGAGATTCTGGTGTGGTGCATATTATGGGTAATACCATAGTAAGAGCAAGAAGGGATTCTAGCAAGATTAAGAAAATTGTCGTGGATTATATCTATGCTTTCCTCAGAAGGATATGCAGGGAAAAGAGTGTCATTCTTAATGTTCCTCATGAGAGCCTCCTAAATGTAGGCCAAGTCTTCTATGTGTAAGGAAGAAATAACACTTTTCATGTGACTAAATCGTGATGTACTGAGTAACATGTACAGATAGCGCATTCCATTTCATGTACAAGTAGTAAAGCCCGCAATCCCTTTTGTTGATAATAGATATTGCTCCATCGTATATAGATCCTTAAAGCTTAGCCTCTAAAAGAAGTTCTCATTTGGAATTGATGCTAAACATGTTGAATAAACTGAATTTTTCTTAGTTGACTTGTGAAGGATAAGCTGCCTATTATGTATGAGTGAGTCTTATTTGTGGAGTTGC

Ace file of the UniGene sp_v3.0_unigene5662

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	K+ uptake permease 10 [Arabidopsis thaliana] sp\|Q9SA05.2\|POT10_ARATH RecName: Full=Potassium transporter 10; Short=AtPOT10 dbj\|BAF01077.1\| putative potassium transporter [Arabidopsis thaliana] gb\|AEE31314.1\| K+ uptake permease 10 [Arabidopsis thaliana]	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Potassium transporter, putative	-	-	1.079e-43	-

Source	Gene names
Sma3	6J23.11; At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g23640; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; CHLREDRAFT_121823; CHLREDRAFT_123407; F17M5.1; F17O7.17; F18F4.60; F1C9.1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31120.1	KUP10 K+ uptake permease 10 chr1:11104375-11107361 REVERSE LENGTH=796	67%
RefSeq	Arabidopsis thaliana	NP_174397.2	K+ uptake permease 10 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002329922.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: your sequence is longer than subject: 798 - 225

Fln protein: METEIGEDLEMNSSDKGRMWSLDQKIDQPIEDKEAGHIRGMDVKKELSGLMVLRLAFQSLGVVYGDLGTSPLYVFNSTFPDGVRDREDLMGALSLIIYTLTLIPLLKYVFVVMRANDNGEGGTFALYSLLCRHVKVNTIPNQHRTDEELTTYSRRKIEDKSFAARTKKWLEAKVDRQNALLLLVLVGTCMVIGDGIFTPAISVLSSVGGIKVDHPNMKTAVVVAVAVLILVILFSVQHYGTGKVGWLFAPAVLLWFLCIGIIGVYNICKHDTVVLKAFSPVYIVKYFRVGTKRSWASLGGIMLSITGTEALFADLGHFSTLAVQIAFTSIVFPCLLLQYMGQAAYLMHHQEDVKEAFYRSIPDPAYWPVFVIATIAAVIASQATISATFTIIKQAVALGCFPRVKVLHTSKDISGQIYIPEINWILMVLCIIVTIAFNSTTQIGNAYGTAVIGVMLVTTLLMALIMLIVWRSNWLLVLLFTSFFLSIELVYFSSVLFKVNQGGWAPLVIAAVFLIIMSVWHYGTVKRYELELESKVSMAWILGLGPSLGLVRVPGIGLLYTELVNGVPHIFSHLITHLPAIHSIVVFVCLKYLPVNTVPQEERFLVKRIGPKDFHMFRCVARYGYKDLHKKDDDFEKMLLDKLSAFIRHESLMESISDSEDYSLPEEYQQETTLDTENGNQMSLHIISTESSQNSIVSERSPQQPVRQLRFSVPNTGIVRNSGTVDDEIQFLNDCRDSGVVHIMGNTIVRARRDSSKIKKIVVDYIYAFLRRICREKSVILNVPHESLLNVGQVFYV*

Protein Length: 799

Fln nts: ATGGGGACCCTTCTCAATGTGAGACAGAGAAGCAGCAGCATCAGCAGAACAGAAA_-_ATGGAGACAGAGATTGGCGAAGATCTAGAAATGAATTCTAGTGACAAAGGGCGCATGTGGTCTCTGGATCAGAAAATAGATCAACCCATTGAAGATAAAGAGGCCGGACATATCAGAGGCATGGACGTAAAGAAGGAGTTGTCGGGTTTGATGGTTCTGCGTCTTGCATTTCAGAGCCTAGGGGTTGTCTATGGAGACTTAGGCACATCTCCTCTATATGTTTTTAATAGCACATTTCCTGATGGTGTCCGCGATCGTGAAGATTTGATGGGGGCTCTTTCGTTAATCATATATACTTTGACGCTAATTCCTCTTCTGAAATATGTCTTTGTGGTCATGAGGGCCAATGACAACGGAGAAGGTGGAACATTTGCTCTGTATTCATTACTCTGTCGGCATGTTAAAGTGAACACTATTCCGAATCAACACCGCACAGATGAAGAACTCACAACTTATAGCAGGCGAAAGATTGAAGATAAGTCATTTGCTGCAAGAACAAAGAAATGGCTGGAAGCAAAAGTTGACCGTCAAAATGCACTTCTGCTTCTTGTACTTGTTGGCACTTGCATGGTCATCGGTGATGGAATTTTTACTCCTGCTATCTCAGTCCTTTCATCTGTTGGTGGTATCAAGGTAGACCACCCTAACATGAAAACTGCTGTAGTTGTGGCAGTTGCAGTGCTCATCTTGGTTATTCTATTTAGCGTACAGCATTATGGTACAGGCAAAGTTGGATGGCTATTTGCCCCAGCAGTTCTTCTTTGGTTCCTATGCATTGGAATTATTGGAGTTTATAATATATGTAAGCACGATACAGTTGTCTTAAAAGCTTTTTCTCCAGTTTATATAGTGAAGTATTTCAGAGTAGGGACGAAACGTAGCTGGGCTTCTCTAGGAGGGATTATGCTCAGTATAACAGGTACAGAAGCACTCTTTGCTGATTTAGGCCATTTTTCAACCTTAGCTGTTCAGATTGCATTCACATCAATTGTGTTTCCTTGCTTGCTTTTGCAATATATGGGACAAGCAGCATATCTTATGCACCATCAAGAAGATGTGAAAGAAGCCTTTTATAGGTCTATTCCAGACCCAGCTTATTGGCCAGTGTTTGTCATTGCAACCATCGCTGCTGTTATTGCCAGTCAGGCTACCATATCTGCTACCTTCACGATTATTAAGCAGGCGGTTGCACTTGGTTGTTTTCCACGAGTGAAGGTCCTTCATACTTCAAAAGACATCTCTGGACAGATTTACATTCCTGAAATTAATTGGATTCTCATGGTTCTTTGCATTATAGTTACCATTGCATTCAACAGCACAACTCAAATTGGAAATGCATATGGTACTGCAGTTATAGGTGTTATGCTGGTCACAACACTTTTGATGGCTCTTATCATGCTAATCGTCTGGAGGAGTAATTGGCTGCTAGTTTTACTATTTACTAGTTTCTTTTTGTCCATTGAGCTTGTATACTTCTCATCTGTGCTATTCAAGGTCAACCAAGGTGGTTGGGCTCCACTTGTGATTGCTGCTGTATTTCTTATTATCATGTCTGTCTGGCATTATGGTACTGTGAAAAGATATGAATTAGAATTAGAGAGCAAGGTTTCCATGGCATGGATTCTGGGTTTAGGCCCCAGCCTTGGTCTGGTTCGAGTTCCAGGGATTGGCCTTCTATATACAGAACTTGTGAATGGAGTGCCTCACATATTCTCGCATCTTATTACTCATCTTCCTGCAATACATTCTATTGTTGTATTTGTCTGTCTAAAATATCTTCCAGTTAATACTGTTCCACAAGAAGAACGTTTTCTTGTTAAGCGCATTGGGCCCAAGGACTTCCACATGTTTAGGTGTGTTGCTAGGTATGGTTATAAGGACTTGCACAAGAAGGATGATGACTTCGAGAAAATGCTCTTGGATAAATTGTCTGCATTTATCCGGCATGAATCACTAATGGAGAGTATCTCAGATTCAGAGGATTACAGCTTACCTGAAGAGTATCAACAAGAAACCACTTTAGACACAGAAAACGGAAATCAGATGTCTTTACACATTATCTCAACAGAATCATCGCAGAACTCAATTGTCTCTGAAAGATCCCCACAACAACCAGTTCGGCAACTCAGGTTTAGTGTTCCTAACACTGGAATTGTCCGCAACAGTGGAACTGTTGATGATGAAATACAATTTCTGAACGATTGCAGAGATTCTGGTGTGGTGCATATTATGGGTAATACCATAGTAAGAGCAAGAAGGGATTCTAGCAAGATTAAGAAAATTGTCGTGGATTATATCTATGCTTTCCTCAGAAGGATATGCAGGGAAAAGAGTGTCATTCTTAATGTTCCTCATGAGAGCCTCCTAAATGTAGGCCAAGTCTTCTATGTGTAA___GGAAGAAATAACACTTTTCATGTGACTAAATCGTGATGTACTGAGTAACATGTACAGATAGCGCATTCCATTTCATGTACAAGTAGTAAAGCCCGCAATCCCTTTTGTTGATAATAGATATTGCTCCATCGTATATAGATCCTTAAAGCTTAGCCTCTAAAAGAAGTTCTCATTTGGAATTGATGCTAAACATGTTGAATAAACTGAATTTTTCTTAGTTGACTTGTGAAGGATAAGCTGCCTATTATGTATGAGTGAGTCTTATTTGTGGAGTTGC

Fln Alignment:

Contig5662___EQKMETEIGEDLEMNSSDKGRMWSLDQKIDQPIEDKEAGHIRGMDVKKELSGLMVLRLAFQSLGVVYGDLGTSPLYVFNSTFPDGVRDREDLMGAXXXXXXXXXXXXXXKYVFVVMRANDNGEGGTFALYSLLCRHVKVNTIPNQHRTDEELTTYSRRKIEDKSFAARTKKWLEAKVDRQNALLLLVLVGTCMVIGDGIFTPAISVLSSVGGI
A9P149______________EIDQEPEMSSSCSGSGSGRGRIWSLDQKIDQPIKDAEAGHVTAMDARKELSALMILRLAFHSFGVVYGDLGTSPLYVFSSTFPDGIQDSEDVMGALSLIIYTLTLIPLLKYVFVVMRANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYSRQTIKDKSFAARTKKWLEGKVYRKNALLLLVLIGTCMVIGDGIFTPAISGHASLSSI

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1813	12		87		0.992554
1814	12			87	0.992554
1938	25		75		1.0
1954		12	87		0.992554
1957			87	12	0.992554
2014	12	87			0.992554
2015		12		75	0.975346
2017	75			25	1.0
2038			80	20	0.995493
2039	80			20	0.995493
2078	33	66			0.997452
2107	50			50	1.0
2129	80		20		0.995493
2132		83	16		0.994512
2367		83		16	0.999991
2514	71		28		1.0
2559		20		80	0.995493
2644	71		28		1.0
2662	40			40	1.0
2663	20			80	0.995493
2686	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain