SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5656

Length: 2424 nt

UniGene Fasta

>sp_v3.0_unigene5656
ATGGGGCTCTGAAACCGAGGTGACTTCTTGACTTTTTGCGAGCAGGAGGTCATGAAAAATCGGGCGACAAAGATATTCAAATTAATTGAATCTGAAAGTTTGAACGATGTATTACTTCATGGCTCGGCGATGGTAGTTTTGGTCCATAGTATGAAGAAGGCTTTGGGAGCCTGCTGCTTTGTATTTTAGAGCGTAAGGAACAAAAGCCAGTCAGGTCTGAAGACCCTAGTATGGGAAGCGGATGGAGGCGGGTCCGAGACGCCTTAGGACTCACAGTCTGTGCATCGGCCTCTCGGGAATTCGACTATCTCCCCTCAGAAAATGCCGATCCTGTTGCGGCCACTCAAAGATGTCAACACCTTACAAACCCTAGGTCGCAATTTCGAATCGCGAGAAGTATGCGAAGCGCTGAAAGTGAATCTCCGAACGAAGTGCCGATTCCTTTATCGTCGCTGTCTCCGCCTTCTAAGCTCGGTCGTTTCCGCTCCACCTCTCGGCTTTCCAGAAGCACCTGCGCAATATGCTTGGAGACAATGAAGCCTGGCCACGGCCACGCAATATTCACCGCAGAGTGTTCGCATGCATTTCATTTTCCCTGCATCGCCTCCAATGTCAGACACGGAAATCTCATTTGTCCCGTATGTCGAGCGACCTGGAACGAGGTCCCGTGGCAAGGTCCCGCAGGCCTTCACAAGAATGAGATGAAAGCAGTTGAAAATGGAGAAACATCGGGACAAGGTTCGAACCCTAGACCTCGGATGATGACTGCAAGACAGCAAGAAGCCCTCAGAAATGCCGAAGAAGAGCAGAGGAGAATGGAACCCGTCTTAAGGATTCTAGATGAATCCATCGCAAGTTTTAGAGGGGATGACCAGCTGAACCCTCCAGAACCGCCCTTATACAATCGTCTAGGCAGGGGCATGGTCAGATTCCTGTCCACACTTTCGGCTTCGGTGTCGACCACGATGCAGCGACGATGCATAGAATTTCCGAGGAATCCGGTGGGACTTTCTCCTTTATACAGGCGGAATCTCTGGTACAAGACGCCTTTGCGCAATGTCTTGGGGGATTGCTGAGCGTTGTCGTCCAGGATGTGCAGTTGACTATTTTACGTCAATCGGACGGCGTTCAGTTGAAAAATATCCACGCCGGGAGTTATCAGACGGACATCCTCTCTGACGGCATTCACGGTACTGTTAAGCTCGGGGACCTTTATGCGGACGAGGACAGGCACGTTCTTGTCGATTTAAAGATTCCGTCTACCAAGAACTTCAGCATGAACATTATTGGCATTAATTCTACCTACAGAGATCCCGTTTCGCAGCAAGTAATGCACACAGAACAAGAAGTCTTGTCCATTTCGAGACCTGATGCCGTCCACGACAGGGCAGCAGCGTTCCCCAATTTGGAGGTGGAAAGGCAGAAAAACAGGCTGAGAGCAGGGAAGGCAATAGCCGAGGCCAGGTCTTTGGCGGACCGTTCCAAAATGTCTGAAGCGCAGCAGGTGCTGCAGAGAGCAAAAGCTGCAGTGAGTGGAACCGGAGGCGAGCTTTGCAAGGAACTGGAAGCGGAGCTAACGGAAATTCAATCAAGAATGGTAAACCGGCAAACTTACGAGCGTTCGGGGCGAGCGTACGTTCTGTCCGCTCAGAATTCTCATCTCCGCCAACGGGCAACAACTCGAGGAGAGAGCATTGACAGCAGCTTCAGCAGAGAATACCGGACTCCTTCCATGTTAAACATGATAACACGTTCCCAGAGCATATCCATGGATTCCAGTCACGAAAACAATACTCCGCCTTCTGCATGGAAAGTTGCGGATAAGCTCGCCAAGGTGGCAGTGCTTCGGAAATCTTCAATCAAGGTCAGCGATTTGCATGGTTTTGAGAAGGCTGGTTTTTGAAAGGTTTTATTATCTTTATACATTTAATGTAATGTCCAGATTCCACTGTTCTACCTACTATGATGGCGAAGATCTGTGTTTTTATTTTTCTTCGTATTCGACTCTCATGAATGATGTATAATAAATGTCAAATTTTCCTATCACGAGATTCGAAACTCAGACCTGCAGAGTGAGCTTGTCAGTAAGTTGGGTGGCGCTCGTGCAATGATAACTTCCTAACTTTAATCACAGCGAATGACCTTTCGATAACAGGCGGCTCACGGAAGTCTCGAAAGGACAGGTATTCTAAACATATTATTTAATGTTAAAATTTATTTGGCTACCCACTGCTAATATTTCTGCGCTGGAGTCCGGTACATGAATTTTCACATGTCTGACACTCTGGTAGTCGACCTGGTTTTCATAAGATGCTTGTGTATTGCGTACAACTTAAACGACCAACAGTGTCAACTAACGTTCTACATATTTTAAGATTTGAATGTAGATGCTGTTCCAGGTTTGTTCTCAAAATATATCGTCGC

Ace file of the UniGene sp_v3.0_unigene5656

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C3HC4-type RING finger-containing protein [Arabidopsis thaliana] gb\|AEC09620.1\| C3HC4-type RING finger-containing protein [Arabidopsis thaliana]	-	-	0.0	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	At1g08050; At2g38970; At3g54780; At5g60710; B1099H05.5; GSVIVT00018177001; GSVIVT00024560001; GSVIVT00035545001; LOC_Os03g04890; OJ1111_C07.20; OJ1163_G08.13; OJ1212_C01.33; OJ1372_D06.16; OJ1499_A07.35; OSIGBa0101P20.12; OSJNBa0043L24.22; OSJNBa0049O12.7

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314287.1	predicted protein, partial [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 558 - 829. Was predicted as Complete, but is very much shorter than de subject

Fln protein: MGSGWRRVRDALGLTVCASASREFDYLPSENADPVAATQRCQHLTNPRSQFRIARSMRSAESESPNEVPIPLSSLSPPSKLGRFRSTSRLSRSTCAICLETMKPGHGHAIFTAECSHAFHFPCIASNVRHGNLICPVCRATWNEVPWQGPAGLHKNEMKAVENGETSGQGSNPRPRMMTARQQEALRNAEEEQRRMEPVLRILDESIASFRGDxxxxxxxxxxxxxSRQGHGQIPVHTFGFGVDHDAATMHRISEESGGTFSFIQAESLVQDAFAQCLGGLLSVVVQDVQLTILRQSDGVQLKNIHAGSYQTDILSDGIHGTVKLGDLYADEDRHVLVDLKIPSTKNFSMNIIGINSTYRDPVSQQVMHTEQEVLSISRPDAVHDRAAAFPNLEVERQKNRLRAGKAIAEARSLADRSKMSEAQQVLQRAKAAVSGTGGELCKELEAELTEIQSRMVNRQTYERSGRAYVLSAQNSHLRQRATTRGESIDSSFSREYRTPSMLNMITRSQSISMDSSHENNTPPSAWKVADKLAKVAVLRKSSIKVSDLHGFEKAGF*

Protein Length: 559

Fln nts: ATGGGGCTCTGAAACCGAGGTGACTTCTTGACTTTTTGCGAGCAGGAGGTCATGAAAAATCGGGCGACAAAGATATTCAAATTAATTGAATCTGAAAGTTTGAACGATGTATTACTTCATGGCTCGGCGATGGTAGTTTTGGTCCATAGTATGAAGAAGGCTTTGGGAGCCTGCTGCTTTGTATTTTAGAGCGTAAGGAACAAAAGCCAGTCAGGTCTGAAGACCCTAGT_-_ATGGGAAGCGGATGGAGGCGGGTCCGAGACGCCTTAGGACTCACAGTCTGTGCATCGGCCTCTCGGGAATTCGACTATCTCCCCTCAGAAAATGCCGATCCTGTTGCGGCCACTCAAAGATGTCAACACCTTACAAACCCTAGGTCGCAATTTCGAATCGCGAGAAGTATGCGAAGCGCTGAAAGTGAATCTCCGAACGAAGTGCCGATTCCTTTATCGTCGCTGTCTCCGCCTTCTAAGCTCGGTCGTTTCCGCTCCACCTCTCGGCTTTCCAGAAGCACCTGCGCAATATGCTTGGAGACAATGAAGCCTGGCCACGGCCACGCAATATTCACCGCAGAGTGTTCGCATGCATTTCATTTTCCCTGCATCGCCTCCAATGTCAGACACGGAAATCTCATTTGTCCCGTATGTCGAGCGACCTGGAACGAGGTCCCGTGGCAAGGTCCCGCAGGCCTTCACAAGAATGAGATGAAAGCAGTTGAAAATGGAGAAACATCGGGACAAGGTTCGAACCCTAGACCTCGGATGATGACTGCAAGACAGCAAGAAGCCCTCAGAAATGCCGAAGAAGAGCAGAGGAGAATGGAACCCGTCTTAAGGATTCTAGATGAATCCATCGCAAGTTTTAGAGGGGATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTAGGCAGGGGCATGGTCAGATTCCTGTCCACACTTTCGGCTTCGGTGTCGACCACGATGCAGCGACGATGCATAGAATTTCCGAGGAATCCGGTGGGACTTTCTCCTTTATACAGGCGGAATCTCTGGTACAAGACGCCTTTGCGCAATGTCTTGGGGGATTGCTGAGCGTTGTCGTCCAGGATGTGCAGTTGACTATTTTACGTCAATCGGACGGCGTTCAGTTGAAAAATATCCACGCCGGGAGTTATCAGACGGACATCCTCTCTGACGGCATTCACGGTACTGTTAAGCTCGGGGACCTTTATGCGGACGAGGACAGGCACGTTCTTGTCGATTTAAAGATTCCGTCTACCAAGAACTTCAGCATGAACATTATTGGCATTAATTCTACCTACAGAGATCCCGTTTCGCAGCAAGTAATGCACACAGAACAAGAAGTCTTGTCCATTTCGAGACCTGATGCCGTCCACGACAGGGCAGCAGCGTTCCCCAATTTGGAGGTGGAAAGGCAGAAAAACAGGCTGAGAGCAGGGAAGGCAATAGCCGAGGCCAGGTCTTTGGCGGACCGTTCCAAAATGTCTGAAGCGCAGCAGGTGCTGCAGAGAGCAAAAGCTGCAGTGAGTGGAACCGGAGGCGAGCTTTGCAAGGAACTGGAAGCGGAGCTAACGGAAATTCAATCAAGAATGGTAAACCGGCAAACTTACGAGCGTTCGGGGCGAGCGTACGTTCTGTCCGCTCAGAATTCTCATCTCCGCCAACGGGCAACAACTCGAGGAGAGAGCATTGACAGCAGCTTCAGCAGAGAATACCGGACTCCTTCCATGTTAAACATGATAACACGTTCCCAGAGCATATCCATGGATTCCAGTCACGAAAACAATACTCCGCCTTCTGCATGGAAAGTTGCGGATAAGCTCGCCAAGGTGGCAGTGCTTCGGAAATCTTCAATCAAGGTCAGCGATTTGCATGGTTTTGAGAAGGCTGGTTTTTGA___AAGGTTTTATTATCTTTATACATTTAATGTAATGTCCAGATTCCACTGTTCTACCTACTATGATGGCGAAGATCTGTGTTTTTATTTTTCTTCGTATTCGACTCTCATGAATGATGTATAATAAATGTCAAATTTTCCTATCACGAGATTCGAAACTCAGACCTGCAGAGTGAGCTTGTCAGTAAGTTGGGTGGCGCTCGTGCAATGATAACTTCCTAACTTTAATCACAGCGAATGACCTTTCGATAACAGGCGGCTCACGGAAGTCTCGAAAGGACAGGTATTCTAAACATATTATTTAATGTTAAAATTTATTTGGCTACCCACTGCTAATATTTCTGCGCTGGAGTCCGGTACATGAATTTTCACATGTCTGACACTCTGGTAGTCGACCTGGTTTTCATAAGATGCTTGTGTATTGCGTACAACTTAAACGACCAACAGTGTCAACTAACGTTCTACATATTTTAAGATTTGAATGTAGATGCTGTTCCAGGTTTGTTCTCAAAATATATCGTCGC

Fln Alignment:

Contig5656___MGSGWRRVRDALGLTVCASASREFDYLPS-------ENADPV------------------AATQRCQHLTNPRSQFRIARSMRSAESESPNEVXXXXXXXXXXXKLGXXXXXXXXXXXXCAICLETMKPGHGHAIFTAECSHAFHFPCIASNVRHGNLICPVCRATWNEVPWQGPAGLHKN-EMKAVENGETSGQGS-NPRPRMMTARQQE-ALRNAEEEQRRMEPVLRILDESIASFRGDDQLNPPEPPLYNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPAEPSRTALIQSSRQGHGQIPVHTFGFGVDHDAATMHRISEESGGTFSFIQAESLVQDAFAQCLGGLLSVVVQDVQLTILRQSDGVQLKNIHAGSYQTDILSDGIHGTVKLGDLYADEDRHVLVDLKIPSTKNFS--MNIIGINSTYRDPVSQQVMHTEQEVLSISRPDAVHDRAAAFPNLEVERQKNRLRAGKAIAEARSLADRSKMSEAQQVLQRAKAAVSGT---GGELCKELEAELTEIQSRMVNRQTYERSGRAYVLSAQNSHLRQRATTRGESIDSSFSREYRTPSMLNMITRSQSISMDSSH-----ENNTPPSAWKVADKLAKVAVLRKSSIKVSDLHGFEKAGF
C0PS55______________MGTGWRRARNALGLSVCASVPTDLDDLQSGGPRFELENRRSAGLQIQHNHAESPRRQQISSPRENCQPLDSPSSDVQSPR-LRNIQTAVSPEAVSKSSSPRSPSRLNLIRNGIRTPKGCCAICLETMKPGHGHAIFTAECSHSFHFPCIASNVRHGNLICPVCRAKWKEVPWQVPVVEAENTDIGTTATTPTVRNGNLQIRRRPNNVRDDEAALRTAEEEQRRLDPVLRILDDSIASFRGHRQSCSQEPTVYDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPSDEQRRSARQSTRYGHVQIPVHAFGFGVDHDAATMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTV-SACAGTKLKSFHAGSYETCVAEDGSHGTVNLGDLYAEEERDILVELKFPAVKSASNPMNLISVGCFFKDPVSQRSFHSREQSFSILRPESTDGLPVAL-NLEVEKERNRLRTAQAIAEARTLADQGDMSGAQRVLQNAKIELQQTRTGDHSLSLALEAEITEIQARMTNIQTYERSGRAFVLSAQSSHFRQRATTRGESFE-SYSREYQTPSMADMVMRSQTLSATASSNPASISTATSISARRTSEKLAKIAMLRKSCARVSDLHGFENGGF

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1105	66		33		0.997452
1172	25		75		0.996473
1174		75	25		0.996473
1175	75			25	0.996473
1404		28		71	1.0
1463	16	83			0.994512
1464			83	16	0.994512
1465	83			16	0.994512
1475		25		75	0.996473
1572			84	15	0.999986
1573	84		15		0.999986
1575		18	81		0.999994
1577			81	18	0.999994
1583	81	18			0.999994
1586		18	81		0.999994
1587	18		81		0.999994
1723	90		10		0.90298
1724	90		10		0.90298
1868		87	12		0.992554
1869	87		12		0.992554
1870	87		12		0.992554
1907	20			80	0.995493
1910	75		25		0.996473
1911	75		25		0.996473
1917		25		75	0.996473
2231		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain