SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5636

Length: 3484 nt

UniGene Fasta

>sp_v3.0_unigene5636
TATGGGAAACCTCCGCATAACAAAATTCTTCTTCGCCAAAACGTAGTGAATTTGTGCGAAGGCATGACGGCGGTGAAGAGAAAAGCCGAGGCCGAAGTGCTCCAGAGCCCTGGTGATGGTGTTGCCCCTCTCCTCCACAAACACCAGAGGGCCGAAAAAGATGAACAAAAGCAACTTGACAACGACGACAACAACACATATGGGTCGCAGGAAGGGACAACGGTCACATGTCTCCACGATGTGTCCTATCCGGAGGAAGGAGGGCACGTCCCCCTTGCAAGGGCCAAGAGAGATGAAGGGGCAACCGCTTCTAAGAAGGCTGCCAAGGAATATGCCTTCAAGCTTGATCCTTTTCAGGATGAAGCCATCTGTTGTCTGGAGCGAGGCGAGTCTGTTTTGGTATCGGCCCATACATCAGCTGGAAAAACTGTTGTTGCTTTATATGCCATTGCCATGTCATTACGAGATAAGCAACGGGTTATTTACACTTCTCCAATCAAGGCACTTAGCAATCAGAAATTTAGGGAATTTAGCGAGGAGTTCTCAGATGTTGGACTGATGACTGGTGATGTCACAATTGCACCAAATGCATCTTGCTTGGTGATGACAACTGAAATTTTACGGAGCATGCAATACAAGGGTTCTGAGGTTATGCGAGAAGTTGCTTGGATAATCTTTGATGAAGTACATTACATGCGTGATAGAGAAAGGGGTGTGGTCTGGGAAGAGAGCATTGTAATGGCTCCCAAAAATTCTCGATTTGTATTTCTCTCTGCAACTGTGCCAAATGCAAAAGAGTTTGCTGATTGGGTTGCAAAGGTACACCAACAGCCTTGTCACATTATTTATACAGATTATCGGCCAACACCCTTACAGCACTATCTCTTCCCCTCTGGGGGAGATGGCTTGTTCATGGTGGTAGATGAGAAAGGCACTTTTCGGGAAGACAGTTTCCAGAAAGCAGTGAATGCTCTTGGAGCTGCTTCTGATAATGGAAACAAAAGAAATGGGAAGTGGCAAAAGGGACTACATGCGGGAAAATCTGGTGAAGAAAGTGACATTTTCAAGATTGCTAAAATGATAATGCAACGGCAGTATGATCCGGTTATTGTTTTCAGTTTCAGCAAGAGAGATTGTGAAATTCTTGCTATGCAGATGGCAAAGTTGGATTTGAATGTTGAAGATGAGAAGAAACTCGTTGATACCATCTTTTGGAGTGCCATGGATTCACTTTCTGATGATGACAAGAAGCTACCACAGGTTTCTCATATTTTACCCTTACTTCAACGAGGCATAGGTGTGCATCATTCTGGTCTGCTTCCTATCCTTAAGGAAGTAATTGAGATACTCTTTCAAGAAGGATTAATCAAGTGTTTATTTGCAACAGAAACTTTCAGCATAGGGCTGAACATGCCTGCAAAGACAGTTGTGTTTACAAATGTCCGGAAATTTGATGGTGACAAGTTCCGTTGGATAACTAGTGGAGAGTATATTCAGATGAGTGGACGTGCTGGAAGGCGAGGTCTTGATGCACGTGGCATCTGCATTTTGATGGTTGATGAAAAGATGGAGCCATCCACAGCAAAATTGATGGTTAAAGGAAGAGCTGATCCTTTGAATAGTGCTTTCCATCTGAGCTACAATATGCTATTGAATCAGATGCGTTGCGAGGATGGTGATCCAGAGACTCTGCTGAGACAATCTTTCTATCAGTTCCAGTCTGATCGTGCTCTTCCCAATCTTCAGAAACGTGTGAAGGATCTAGAGGAACAGAGAGACTTGATTGTGATCGAGGAAGAAGATAAATTAAAAGATTATTACTCTCTATTCGAACAGCTCCGTAGCTTCAAGGGTGACATACGTAATATTGTATTTTTACCAAGACATTGTTTACCTTTTCTACAGCCTGGAAGGCTTATCCGCATTCTAAGCACAAGTGGAGAGAAAGACAAACTGTCTTTCTCACAGGATGAGCAACTAACTTGGGGTGTAATTGTGAACTTTGAGAGAGCGAAAAACACATCAAAAGATGATACAAATGCAAAGCCAGAAGATGCACAGTATACTATTGATATTCTAACAAGATGTCGTGCAAATAAAGAATGTGGGCGGGGAAAAATTGTTCAGACTGTTCCATTGACAGAACCTGGCGAGCCACTTGTCGTTGCTGTACCACTTTCTCAGATTGACAGCTTGAGTGCTATCCGCATTTATATTCCCAAGGACTTGCTATCTGTTGAAGCTCGTGAAAACACTCTGAAAAAAGTGCAGGAGGTGTTGAACCGCTTTCCAGATGGTGTGCAACTTTTAGACCCAGAAGATGACATGCAGGTACAAAGTAGTTCATATAAGAAGGCCGTTCGTCGAATAGAAACCCTTGAAGGCTTACTTTCTAAACATGCTGTTTCCAAGTCTCCCATTCTCCAGAAGCGCCTACAAGTACTAAGAAAGAAAGAAGAGTTAACAGCAATGATCCGTGCTGCCCGGAAGGAGGTCCGTGCTTCGACAACATTGGCTTTCAAAGATGAGCTGAAGGCTCGAAAGCGTGTACTTCGGAGATTAGGGTATGCAACAAGTGATGACGTTGTGGAACTCAAGGGGAAGGTTGCTTGTGAAATTAGTAGTGCTGATGAATTAGCTCTTACAGAACTCATGTTCAGTGGCGTGTTCAAGGATGCTACAGTTGAACAATTGGTTGCTCTCTTGTCATGTTTTGTCTGGCAAGAGAAATTGAAAGACAAGCCAAAAATAAGAGAGGACCTTGAAAATCTCTTGTCTCAGTTACATGACATTGCCCGAAGGATAGGCAAAATACAGCTTGAATGCAAGGTGCAAATTGATGTGGAAGCCTATGTGAACTCTTTCCGTCCAGACATTATGGAGGCAGTTTATGCATGGGCAAAAGGGGCCAAATTCTACGAAATAATGAAAATTACCGAGGTCTTTGAGGGTAGTTTAATTCGTGCAATTCGAAGATTGGAAGAAGTTCTTCAACAGCTAGTACTAGCTTCAAGATCTGTAGGCGAGGTTCAGCTAGAATTAAAATTTCAGGAGGCTATTACAAGAATTAAAAGAGACATTGTTTTCGCTGCATCATTGTACTTGTAGATTCTAATATAATTTAAAAAATTCAGAAAGTGGTTTAGCAACATAATTGTTTCTTATATAATTTTTATGGGGACTGATCATGTATAAATAATTTGACTGTCTATGGTTAATGGAAAATCTATAGATTTGTTTAGGATCTTCCAGCATAACGCAAAGACATTTCCATGGTTATGGTATTAAGTAACTTATTTGCGCAGTTATTCGAATATTAACGCGTTGCGTATATATTTACAGTCTTGACAGTTCAGCTACTCCTAATATAGGTTATTAAAGTAGGTGCACTTAATTCACGGTTATAATAGTATATTATCCCAATGCCTGAGAACTACGCCAGACTGTAGATTGGTTGTACCAAGTACATTTCTTCAACAATCAC

Ace file of the UniGene sp_v3.0_unigene5636

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Helicase, putative n=1 Tax=Ricinus communis RepID=B9SPB9_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DSH, C-terminal	IPR012961	-	-
Sma3		IPR014021	-	-
Sma3	RNA helicase, ATP-dependent, SK12/DOB1	IPR016438	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G59760.1	RNA helicase, ATP-dependent, SK12/DOB1 protein chr1:21984571-21990110 REVERSE LENGTH=988	69%
RefSeq	Arabidopsis thaliana	NP_176185.1	RNA helicase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002328732.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMT3

Fln msg: your sequence is longer than subject: 1015 - 884

Fln protein: MTAVKRKAEAEVLQSPGDGVAPLLHKHQRAEKDEQKQLDNDDNNTYGSQEGTTVTCLHDVSYPEEGGHVPLARAKRDEGATASKKAAKEYAFKLDPFQDEAICCLERGESVLVSAHTSAGKTVVALYAIAMSLRDKQRVIYTSPIKALSNQKFREFSEEFSDVGLMTGDVTIAPNASCLVMTTEILRSMQYKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIIYTDYRPTPLQHYLFPSGGDGLFMVVDEKGTFREDSFQKAVNALGAASDNGNKRNGKWQKGLHAGKSGEESDIFKIAKMIMQRQYDPVIVFSFSKRDCEILAMQMAKLDLNVEDEKKLVDTIFWSAMDSLSDDDKKLPQVSHILPLLQRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGLDARGICILMVDEKMEPSTAKLMVKGRADPLNSAFHLSYNMLLNQMRCEDGDPETLLRQSFYQFQSDRALPNLQKRVKDLEEQRDLIVIEEEDKLKDYYSLFEQLRSFKGDIRNIVFLPRHCLPFLQPGRLIRILSTSGEKDKLSFSQDEQLTWGVIVNFERAKNTSKDDTNAKPEDAQYTIDILTRCRANKECGRGKIVQTVPLTEPGEPLVVAVPLSQIDSLSAIRIYIPKDLLSVEARENTLKKVQEVLNRFPDGVQLLDPEDDMQVQSSSYKKAVRRIETLEGLLSKHAVSKSPILQKRLQVLRKKEELTAMIRAARKEVRASTTLAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSADELALTELMFSGVFKDATVEQLVALLSCFVWQEKLKDKPKIREDLENLLSQLHDIARRIGKIQLECKVQIDVEAYVNSFRPDIMEAVYAWAKGAKFYEIMKITEVFEGSLIRAIRRLEEVLQQLVLASRSVGEVQLELKFQEAITRIKRDIVFAASLYL*

Protein Length: 1016

Fln nts: TATGGGAAACCTCCGCATAACAAAATTCTTCTTCGCCAAAACGTAGTGAATTTGTGCGAAGGC_-_ATGACGGCGGTGAAGAGAAAAGCCGAGGCCGAAGTGCTCCAGAGCCCTGGTGATGGTGTTGCCCCTCTCCTCCACAAACACCAGAGGGCCGAAAAAGATGAACAAAAGCAACTTGACAACGACGACAACAACACATATGGGTCGCAGGAAGGGACAACGGTCACATGTCTCCACGATGTGTCCTATCCGGAGGAAGGAGGGCACGTCCCCCTTGCAAGGGCCAAGAGAGATGAAGGGGCAACCGCTTCTAAGAAGGCTGCCAAGGAATATGCCTTCAAGCTTGATCCTTTTCAGGATGAAGCCATCTGTTGTCTGGAGCGAGGCGAGTCTGTTTTGGTATCGGCCCATACATCAGCTGGAAAAACTGTTGTTGCTTTATATGCCATTGCCATGTCATTACGAGATAAGCAACGGGTTATTTACACTTCTCCAATCAAGGCACTTAGCAATCAGAAATTTAGGGAATTTAGCGAGGAGTTCTCAGATGTTGGACTGATGACTGGTGATGTCACAATTGCACCAAATGCATCTTGCTTGGTGATGACAACTGAAATTTTACGGAGCATGCAATACAAGGGTTCTGAGGTTATGCGAGAAGTTGCTTGGATAATCTTTGATGAAGTACATTACATGCGTGATAGAGAAAGGGGTGTGGTCTGGGAAGAGAGCATTGTAATGGCTCCCAAAAATTCTCGATTTGTATTTCTCTCTGCAACTGTGCCAAATGCAAAAGAGTTTGCTGATTGGGTTGCAAAGGTACACCAACAGCCTTGTCACATTATTTATACAGATTATCGGCCAACACCCTTACAGCACTATCTCTTCCCCTCTGGGGGAGATGGCTTGTTCATGGTGGTAGATGAGAAAGGCACTTTTCGGGAAGACAGTTTCCAGAAAGCAGTGAATGCTCTTGGAGCTGCTTCTGATAATGGAAACAAAAGAAATGGGAAGTGGCAAAAGGGACTACATGCGGGAAAATCTGGTGAAGAAAGTGACATTTTCAAGATTGCTAAAATGATAATGCAACGGCAGTATGATCCGGTTATTGTTTTCAGTTTCAGCAAGAGAGATTGTGAAATTCTTGCTATGCAGATGGCAAAGTTGGATTTGAATGTTGAAGATGAGAAGAAACTCGTTGATACCATCTTTTGGAGTGCCATGGATTCACTTTCTGATGATGACAAGAAGCTACCACAGGTTTCTCATATTTTACCCTTACTTCAACGAGGCATAGGTGTGCATCATTCTGGTCTGCTTCCTATCCTTAAGGAAGTAATTGAGATACTCTTTCAAGAAGGATTAATCAAGTGTTTATTTGCAACAGAAACTTTCAGCATAGGGCTGAACATGCCTGCAAAGACAGTTGTGTTTACAAATGTCCGGAAATTTGATGGTGACAAGTTCCGTTGGATAACTAGTGGAGAGTATATTCAGATGAGTGGACGTGCTGGAAGGCGAGGTCTTGATGCACGTGGCATCTGCATTTTGATGGTTGATGAAAAGATGGAGCCATCCACAGCAAAATTGATGGTTAAAGGAAGAGCTGATCCTTTGAATAGTGCTTTCCATCTGAGCTACAATATGCTATTGAATCAGATGCGTTGCGAGGATGGTGATCCAGAGACTCTGCTGAGACAATCTTTCTATCAGTTCCAGTCTGATCGTGCTCTTCCCAATCTTCAGAAACGTGTGAAGGATCTAGAGGAACAGAGAGACTTGATTGTGATCGAGGAAGAAGATAAATTAAAAGATTATTACTCTCTATTCGAACAGCTCCGTAGCTTCAAGGGTGACATACGTAATATTGTATTTTTACCAAGACATTGTTTACCTTTTCTACAGCCTGGAAGGCTTATCCGCATTCTAAGCACAAGTGGAGAGAAAGACAAACTGTCTTTCTCACAGGATGAGCAACTAACTTGGGGTGTAATTGTGAACTTTGAGAGAGCGAAAAACACATCAAAAGATGATACAAATGCAAAGCCAGAAGATGCACAGTATACTATTGATATTCTAACAAGATGTCGTGCAAATAAAGAATGTGGGCGGGGAAAAATTGTTCAGACTGTTCCATTGACAGAACCTGGCGAGCCACTTGTCGTTGCTGTACCACTTTCTCAGATTGACAGCTTGAGTGCTATCCGCATTTATATTCCCAAGGACTTGCTATCTGTTGAAGCTCGTGAAAACACTCTGAAAAAAGTGCAGGAGGTGTTGAACCGCTTTCCAGATGGTGTGCAACTTTTAGACCCAGAAGATGACATGCAGGTACAAAGTAGTTCATATAAGAAGGCCGTTCGTCGAATAGAAACCCTTGAAGGCTTACTTTCTAAACATGCTGTTTCCAAGTCTCCCATTCTCCAGAAGCGCCTACAAGTACTAAGAAAGAAAGAAGAGTTAACAGCAATGATCCGTGCTGCCCGGAAGGAGGTCCGTGCTTCGACAACATTGGCTTTCAAAGATGAGCTGAAGGCTCGAAAGCGTGTACTTCGGAGATTAGGGTATGCAACAAGTGATGACGTTGTGGAACTCAAGGGGAAGGTTGCTTGTGAAATTAGTAGTGCTGATGAATTAGCTCTTACAGAACTCATGTTCAGTGGCGTGTTCAAGGATGCTACAGTTGAACAATTGGTTGCTCTCTTGTCATGTTTTGTCTGGCAAGAGAAATTGAAAGACAAGCCAAAAATAAGAGAGGACCTTGAAAATCTCTTGTCTCAGTTACATGACATTGCCCGAAGGATAGGCAAAATACAGCTTGAATGCAAGGTGCAAATTGATGTGGAAGCCTATGTGAACTCTTTCCGTCCAGACATTATGGAGGCAGTTTATGCATGGGCAAAAGGGGCCAAATTCTACGAAATAATGAAAATTACCGAGGTCTTTGAGGGTAGTTTAATTCGTGCAATTCGAAGATTGGAAGAAGTTCTTCAACAGCTAGTACTAGCTTCAAGATCTGTAGGCGAGGTTCAGCTAGAATTAAAATTTCAGGAGGCTATTACAAGAATTAAAAGAGACATTGTTTTCGCTGCATCATTGTACTTGTAG___ATTCTAATATAATTTAAAAAATTCAGAAAGTGGTTTAGCAACATAATTGTTTCTTATATAATTTTTATGGGGACTGATCATGTATAAATAATTTGACTGTCTATGGTTAATGGAAAATCTATAGATTTGTTTAGGATCTTCCAGCATAACGCAAAGACATTTCCATGGTTATGGTATTAAGTAACTTATTTGCGCAGTTATTCGAATATTAACGCGTTGCGTATATATTTACAGTCTTGACAGTTCAGCTACTCCTAATATAGGTTATTAAAGTAGGTGCACTTAATTCACGGTTATAATAGTATATTATCCCAATGCCTGAGAACTACGCCAGACTGTAGATTGGTTGTACCAAGTACATTTCTTCAACAATCAC

Fln Alignment:

Contig5636___MSLRDKQRVIYTSPIKALSNQKFREFSEEFSDVGLMTGDVTIAPNASCLVMTTEILRSMQYKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIIYTDYRPTPLQHYLFPSGGDGLFMVVDEKGTFREDSFQKAVNALGAASDNGNKRNGKWQKGLHAGKSGEESDIFKIAKMIMQRQYDPVIVFSFSKRDCEILAMQMAKLDLNVEDEKKLVDTIFWSAMDSLSDDDKKLPQVSHILPLLQRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSXXXXXXXXXXXXICILMVDEKMEPSTAKLMVKGRADPLNSAFHLSYNMLLNQMRCEDGDPETLLRQSFYQFQSDRALPNLQKRVKDLEEQRDLIVIEEEDKLKDYYSLFEQLRSFKGDIRNIVFLPRHCLPFLQPGRLIRILSTSGEKDKLSFSQDEQLTWGVIVNFERAKNTSKDDTNAKPEDAQYTIDILTRCRANKECGRGKIVQTVPLTEPGEPLVVAVPLSQIDSLSAIRIYIPKDLLSVEARENTLKKVQEVLNRFPDGVQLLDPEDDMQVQSSSYKKAVRRIETLEGLLSKHAVSKSPILQKRLQVLRKKEELTAMIRAARKEVRASTTLAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSADELALTELMFSGVFKDATVEQLVALLSCFVWQEKLKDKPKIREDLENLLSQLHDIARRIGKIQLECKVQIDVEAYVNSFRPDIMEAVYAWAKGAKFYEIMKITEVFEGSLIRAIRRLEEVLQQLVLASRSVGEVQLELKFQEAITRIKRDIVFAASLYL
B8LMT3______________MSLRDKQRVIYTSPIKALSNQKFREFSEEFSDVGLMTGDVTIAPNASCLVMTTEILRSMQYKGSEIMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHRQPCHIIYTDYRPTPLQHYLFPSGGDGLFLVVDEKGTFREDSFQKAVNALGAASDNGNKRNGKWQKGLQAGKSGEESDIFKIAKMIMQRQYDPVIVFSFSKRDCEILAMQMAKLDLNVEDEKKLVDTIFWSAMDSLSDDDKKLPQVSHILPLLQRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGLDARGICILMVDEKMEPSTAKLMVKGSADPLNSAFHLSYNMLLNQMRCEDGDPETLLRQSFYQFQSDRALPNLQKRVKDLEEQRDSIMIEEEDKLKDYYSLLEQFRSFKGDIRSIVFSPRHCLPFLQPGRLIRILSTSGEKDKLSFSQDEQLTWGVIVNFERVKSTSKDDTDVRPEDAQYTIDILTKCRANKDNSRGKIVQTVPLTEPGEPLVVAVPLSQIDSLSAIRIYIPKDLLSVEARENTLKKVQEVLNRFPDGVQLLDPEDDMQVQSSSYKKAVRRIETLEGLLAKHVVSKSPILQKRLQVLRKKEELTAMVRAARRQVRASTSLAFKDELKARKRVLRRLGYATSDDVVELKGKVACEISSADELALTELMFSGVFKDATVEQLVSLLSCFVWQEKLKDRPKIREDLESLLSHLHDIARRIGKVQLECKVQIDVEAYVNSFRPDVMEAVYAWAKGAKFYEVMKITEVFEGSLIRAIRRLEEVLQQLVLASKSVGEVQLELKFQEAITRIKRDIVFAASLYL

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
588	33			66	0.997452
927		28	71		1.0
929	71			28	1.0
930	71			28	1.0
939	16			83	0.994512
940	16	83			0.994512
941			83	16	0.994512
943			83	16	0.994512
1024	33		66		1.0
1025		33	66		1.0
1027		66		33	1.0
1125		83		16	0.994512
1242		20		80	0.995493
1376	14		85		0.993533
1377		14		85	0.993533
1388		88		11	0.923564
1389	88		11		0.923564
1390			88	11	0.923564
1418	11	77		11	0.968132
1419		12	12	75	0.975346
1420	12		75		0.975346
1421		75		25	1.0
1422	87			12	0.992554
1548		80		20	0.995493
1549	80			20	0.995493
1617	20			80	0.995493
1650	14		85		0.993533
1652	11			88	0.923564
1796	83		16		0.994512
1811	25			75	0.996473
1812			25	75	0.996473
1917			75	25	0.996473
1967		20		80	0.995493
2165		83		16	0.994512
2258	85			14	0.993533
2284			77	22	0.999999
2312		88		11	0.923564
2339			86	13	0.999973
2516	66			33	1.0
2975	88		11		0.999937
3136	70			10	0.999998
3265	18	81			0.999994

SSRs (tot: 1)

Start position	End position	Sequence	Length
2445	2457	AAGA AAGA AAGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain