SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5631

Length: 2903 nt

UniGene Fasta

>sp_v3.0_unigene5631
CCTTTAAACGTCTTGACCTTGGTGTCATGGACCTGCTGAATACAAAAACAAACTGACCGAAACAACAACACAAATTCAGCGTGGATCGTCTCGGGTCAGCGGATCCACGATGAGCAACTAGAGCTCGATCCACAGCAGCTCCCAGAATTCATAAACCAGCAGATCCAGACTAGAACCTAGGACCTTCTTGGCCCCTGATCGATTCGCAAAGCTGAGCTCAGAGGGCCTTCAACAATGGCGGACTTCCTAGAGATGGAAAGTAGGGATAGCATACGGATGACATGGAATGTGTGGCCGAGCTCCAAGATCGAAGTTAGCAAATGCGTAATTCCGCTGGCGGCCGTCTACAGCCCGCTCCGCACGGCGCCGGAGATGCCCGTCCTGCCCTACCCTCCTCTCCGCTGCAAATCCTGTCTCTGCATTCTAAACCCTTACAGTCGCGTGGATTACACGGCCAAGATCTGGCTATGCCCCTTTTGTTACCAGCGGAACCATTTTCCCCAGCATTACGCCATGATCAACGAGAGCAATGTGCCTGCCGAGCTTTTCCAGCAGTATACGACCATCGAGTACGCAATTTCCGGTGAACGAGCTTCGAACCCGAACCCTGTCTTTCTGTTCGTGCTGGACACGTGCGTGATCGAAGAGGAATTGGGGTACGTTAAATCGGCCCTGCGCCAGGCCATAACTCTGCTGCCAGAGAATGCTCTGGTGGGGCTGATTACATTCGGGACTCAGGTTCATGTGCACGAATTGGGGTTTGCAGATCTGTTCAAAACTTACGTTTTCAGGGGTTCCAAGGAGATTTCTAAAGAGCAGATTTTGGATCAGCTGGGGCTTACGGGGCCTCGGCCTGGATTTCCAAAGGGAACGACCGTCGGTGGGATGCCAGGTGGAGGGGGTTTGAATGGTGTTACTGCTGGGGGAATTAATCGATTCTTGCTTGCGGCGTCGGACTGTGAATACACGTTGAATTCTCTTCTTGATGAATTACAGAGAGATCAATGGCCAGTAGGAGCTAATAGTAGAGCTATGCGCTGTACTGGCATGGCTTTAAGTGTTGCAGCAGGTTTACTTGGTGCTTGTGTGCCAGGAACTGGAGCTCGGATTTTAGCTCTTGTTGGTGGTCCATGTACGGAGGGTCCAGGGATGATTGTGTCCAAGGATCTATCTGAGCCCGTCCGTTCCCACAAAGACCTAGACAAGGATGCAGCTCCACATTATCACAAAGCTATCAAATTTTATGACAGCCTTGCAAAACAACTTGTCAACCAGGGTCATGTCCTGGATCTTTTTGCTTGTGCGCTTGACCAGGTTGGGGTTGCTGAAATGAAAGTAGCTGTTGAAAGAACTGGTGGCTTGGTTGTGTTAGCAGAAAGCTTTGGTCATTCTGTGTTCAAGGACTCTTTCAAACGTATTTTTGAGGCTGGAAATCAATCCCTTGGTCTTTCGTTCAATGGCACCTTTGAAGTAAATTGTTCCAAGGATGTAAAGATTCAAGGTATTATAGGACCTTGTTCATCTTTGGAAAAGAAAGGGCCATCTTGCGCAGACATTGTGATTGGTCAGGGCAATACAACTTCATGGAAGATGTGTGGACTTGATAAAAATACTTCCCTGACGATATTTTTTGATGTTGCACCAAGTGAACGTTCTAGCTCAGCATTACAGGCTGCCAATCAGCAGCTTTTTATCCAGTTTTTAACACATTACCAGCATTCTGATGGCCACATGAGGCTCCGGGTTACAACAATTACAAGGACATGGGTGGAGGGCAGTGCAACTACTGAGGAACTTGTAGCAGGATTTGACCAGGAGACTGCTGCTGTTGTGATGGCTAGGCAAGCTTCTTTTAAAATGGAGACAGAGGAAGAGTTTAATGCAACAAGATGGTTAGACAGGTGTTTAATTCGTGTGTGTTCGAGATTTGGTGATTACCGAAAGGATGATGTCACTTCATTCAGCTTGAACTCAAGTTTTGCAATATTGCCACAATTCATATTCAATCTTAGACGTTCTCAGTTTGTACAGGTTTTTAATAATAGCCCAGATGAGACAGCTTACTTCCGCATGTTACTGAATAGGGAGAATGTCAACAATTCTGTAGTTATGATCCAGCCATCGCTGATTTCTTATTCTTTCAATGCACCTCCTGAGCCAGCACTGCTAGATGTGGCTTCTATTTCAGCAGATCGTATACTTTTGCTGGATGCCTACTTCAGTGTTGTTGTCTTTCATGGTATGACTATTGCTCAGTGGCGCAATATGGGCTATCATAACCAACCAGAGCATCAGGCATTTGCTCAATTGTTGCAAGCACCTCATGATGATGCACAGGCTATAATCACGGAACGATTTCCTGTACCTAGACTGGTTGTCTGTGATCAACATGGATCACAGGCACGTTTTTTGCTTGCTAAGTTGAATCCATCAGCAACATATAACTCGGCTAATGAGGCACCTCCTGGAGGAGACATAATCTTCACAGATGATGTGAGTTTGCAAGTATTTGTCGAGCATCTTCAACGGCTAGCTGTGCAATCTTGATATTTGTAAACCAAATTCTGCAAGGACAGTGGCTGCTGTCAATCAATTTTCAGTTTTCATTGAGTTGGTTACAAGGATCCAGATTGAAACTGCAATTAGGTGATTTCATTTGCCGAATAAGAAGAAAGGTATATTATTCTTTTAATCAGAAGTCGCATCGGCCATGTAAGCAATAAAACGTTTGCAATGCGGGTTCAATTGGCTCATAAGATTTTTGTGAATATGACAAATGTGGTGAAAGCCTATCCAAATCACCTTCGAGAGAGGATATTTCAATGCTGACAGTTGTAGTGATAGTAAAAGGCACTTCAGTAGGATTTTTTCTTTATCGGTTTATTTATTTTTGTAACCATAAA

Ace file of the UniGene sp_v3.0_unigene5631

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport protein SEC23 [Arabidopsis thaliana] dbj\|BAB02785.1\| protein transport protein Sec23 [Arabidopsis thaliana] gb\|AAO22730.1\| putative transport protein [Arabidopsis thaliana] gb\|AAO50656.1\| putative transport protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	74%
Sma3	Chromosome undetermined scaffold_144, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00003489001;

Source	GOs	Term	Type	Identity
Sma3	COPII vesicle coat	GO:0030127	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23660.2	Sec23/Sec24 protein transport family protein chr3:8513666-8517729 REVERSE LENGTH=791	68%
RefSeq	Arabidopsis thaliana	NP_189008.1	protein transport protein SEC23 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002329468.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1QZR8

Fln msg: your sequence is shorter than subject: 771 - 793

Fln protein: MADFLEMESRDSIRMTWNVWPSSKIEVSKCVIPLAAVYSPLRTAPEMPVLPYPPLRCKSCLCILNPYSRVDYTAKIWLCPFCYQRNHFPQHYAMINESNVPAELFQQYTTIEYAISGERASNPNPVFLFVLDTCVIEEELGYVKSALRQAITLLPENALVGLITFGTQVHVHELGFADLFKTYVFRGSKEISKEQILDQLGLTGPRPGFPKGTTVGGMPGGGGLNGVTAGGINRFLLAASDCEYTLNSLLDELQRDQWPVGANSRAMRCTGMALSVAAGLLGACVPGTGARILALVGGPCTEGPGMIVSKDLSEPVRSHKDLDKDAAPHYHKAIKFYDSLAKQLVNQGHVLDLFACALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRIFEAGNQSLGLSFNGTFEVNCSKDVKIQGIIGPCSSLEKKGPSCADIVIGQGNTTSWKMCGLDKNTSLTIFFDVAPSERSSSALQAANQQLFIQFLTHYQHSDGHMRLRVTTITRTWVEGSATTEELVAGFDQETAAVVMARQASFKMETEEEFNATRWLDRCLIRVCSRFGDYRKDDVTSFSLNSSFAILPQFIFNLRRSQFVQVFNNSPDETAYFRMLLNRENVNNSVVMIQPSLISYSFNAPPEPALLDVASISADRILLLDAYFSVVVFHGMTIAQWRNMGYHNQPEHQAFAQLLQAPHDDAQAIITERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSANEAPPGGDIIFTDDVSLQVFVEHLQRLAVQS*

Protein Length: 772

Fln nts: CCTTTAAACGTCTTGACCTTGGTGTCATGGACCTGCTGAATACAAAAACAAACTGACCGAAACAACAACACAAATTCAGCGTGGATCGTCTCGGGTCAGCGGATCCACGATGAGCAACTAGAGCTCGATCCACAGCAGCTCCCAGAATTCATAAACCAGCAGATCCAGACTAGAACCTAGGACCTTCTTGGCCCCTGATCGATTCGCAAAGCTGAGCTCAGAGGGCCTTCAACA_-_ATGGCGGACTTCCTAGAGATGGAAAGTAGGGATAGCATACGGATGACATGGAATGTGTGGCCGAGCTCCAAGATCGAAGTTAGCAAATGCGTAATTCCGCTGGCGGCCGTCTACAGCCCGCTCCGCACGGCGCCGGAGATGCCCGTCCTGCCCTACCCTCCTCTCCGCTGCAAATCCTGTCTCTGCATTCTAAACCCTTACAGTCGCGTGGATTACACGGCCAAGATCTGGCTATGCCCCTTTTGTTACCAGCGGAACCATTTTCCCCAGCATTACGCCATGATCAACGAGAGCAATGTGCCTGCCGAGCTTTTCCAGCAGTATACGACCATCGAGTACGCAATTTCCGGTGAACGAGCTTCGAACCCGAACCCTGTCTTTCTGTTCGTGCTGGACACGTGCGTGATCGAAGAGGAATTGGGGTACGTTAAATCGGCCCTGCGCCAGGCCATAACTCTGCTGCCAGAGAATGCTCTGGTGGGGCTGATTACATTCGGGACTCAGGTTCATGTGCACGAATTGGGGTTTGCAGATCTGTTCAAAACTTACGTTTTCAGGGGTTCCAAGGAGATTTCTAAAGAGCAGATTTTGGATCAGCTGGGGCTTACGGGGCCTCGGCCTGGATTTCCAAAGGGAACGACCGTCGGTGGGATGCCAGGTGGAGGGGGTTTGAATGGTGTTACTGCTGGGGGAATTAATCGATTCTTGCTTGCGGCGTCGGACTGTGAATACACGTTGAATTCTCTTCTTGATGAATTACAGAGAGATCAATGGCCAGTAGGAGCTAATAGTAGAGCTATGCGCTGTACTGGCATGGCTTTAAGTGTTGCAGCAGGTTTACTTGGTGCTTGTGTGCCAGGAACTGGAGCTCGGATTTTAGCTCTTGTTGGTGGTCCATGTACGGAGGGTCCAGGGATGATTGTGTCCAAGGATCTATCTGAGCCCGTCCGTTCCCACAAAGACCTAGACAAGGATGCAGCTCCACATTATCACAAAGCTATCAAATTTTATGACAGCCTTGCAAAACAACTTGTCAACCAGGGTCATGTCCTGGATCTTTTTGCTTGTGCGCTTGACCAGGTTGGGGTTGCTGAAATGAAAGTAGCTGTTGAAAGAACTGGTGGCTTGGTTGTGTTAGCAGAAAGCTTTGGTCATTCTGTGTTCAAGGACTCTTTCAAACGTATTTTTGAGGCTGGAAATCAATCCCTTGGTCTTTCGTTCAATGGCACCTTTGAAGTAAATTGTTCCAAGGATGTAAAGATTCAAGGTATTATAGGACCTTGTTCATCTTTGGAAAAGAAAGGGCCATCTTGCGCAGACATTGTGATTGGTCAGGGCAATACAACTTCATGGAAGATGTGTGGACTTGATAAAAATACTTCCCTGACGATATTTTTTGATGTTGCACCAAGTGAACGTTCTAGCTCAGCATTACAGGCTGCCAATCAGCAGCTTTTTATCCAGTTTTTAACACATTACCAGCATTCTGATGGCCACATGAGGCTCCGGGTTACAACAATTACAAGGACATGGGTGGAGGGCAGTGCAACTACTGAGGAACTTGTAGCAGGATTTGACCAGGAGACTGCTGCTGTTGTGATGGCTAGGCAAGCTTCTTTTAAAATGGAGACAGAGGAAGAGTTTAATGCAACAAGATGGTTAGACAGGTGTTTAATTCGTGTGTGTTCGAGATTTGGTGATTACCGAAAGGATGATGTCACTTCATTCAGCTTGAACTCAAGTTTTGCAATATTGCCACAATTCATATTCAATCTTAGACGTTCTCAGTTTGTACAGGTTTTTAATAATAGCCCAGATGAGACAGCTTACTTCCGCATGTTACTGAATAGGGAGAATGTCAACAATTCTGTAGTTATGATCCAGCCATCGCTGATTTCTTATTCTTTCAATGCACCTCCTGAGCCAGCACTGCTAGATGTGGCTTCTATTTCAGCAGATCGTATACTTTTGCTGGATGCCTACTTCAGTGTTGTTGTCTTTCATGGTATGACTATTGCTCAGTGGCGCAATATGGGCTATCATAACCAACCAGAGCATCAGGCATTTGCTCAATTGTTGCAAGCACCTCATGATGATGCACAGGCTATAATCACGGAACGATTTCCTGTACCTAGACTGGTTGTCTGTGATCAACATGGATCACAGGCACGTTTTTTGCTTGCTAAGTTGAATCCATCAGCAACATATAACTCGGCTAATGAGGCACCTCCTGGAGGAGACATAATCTTCACAGATGATGTGAGTTTGCAAGTATTTGTCGAGCATCTTCAACGGCTAGCTGTGCAATCTTGA___TATTTGTAAACCAAATTCTGCAAGGACAGTGGCTGCTGTCAATCAATTTTCAGTTTTCATTGAGTTGGTTACAAGGATCCAGATTGAAACTGCAATTAGGTGATTTCATTTGCCGAATAAGAAGAAAGGTATATTATTCTTTTAATCAGAAGTCGCATCGGCCATGTAAGCAATAAAACGTTTGCAATGCGGGTTCAATTGGCTCATAAGATTTTTGTGAATATGACAAATGTGGTGAAAGCCTATCCAAATCACCTTCGAGAGAGGATATTTCAATGCTGACAGTTGTAGTGATAGTAAAAGGCACTTCAGTAGGATTTTTTCTTTATCGGTTTATTTATTTTTGTAACCATAAA

Fln Alignment:

Contig5631___DSIRMTWNVWPSSKIEVSKCVIPLAAVYSPLRTAPEM--PVLPYPPLRCKS-CLCILNPYSRVDYTAKIWLCPFCYQRNHFPQHYAMINESNVPAELFQQYTTIEYAISGERASN------------PNPVFLFVLDTCVIEEELGYVKSALRQAITLLPENALVGLITFGTQVHVHELGFADLFKTYVFRGSKEISKEQILDQLGLTGP-RPGFPKXXXXXXXXXXXXXXXXXXXXINRFLLAASDCEYTLNSLLDELQRDQWPVGANSRAMRCTGMALSVAAGLLGACVPGTGARILALVGGPCTEGPGMIVSKDLSEPVRSHKDLDKDAAPHYHKAIKFYDSLAKQLVNQGHVLDLFACALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRIFEAGNQSLGLSFNGTFEVNCSKDVKIQGIIGPCSSLEKKGPSCADIVIGQGNTTSWKMCGLDKNTSLTIFFDVAPSERSSSALQAANQQLFIQFLTHYQHSDGHMRLRVTTITRTWVEGSATTEELVAGFDQETAAVVMARQASFKMETEEEFNATRWLDRCLIRVCSRFGDYRKDDVTSFSLNSSFAILPQFIFNLRRSQFVQVFNNSPDETAYFRMLLNRENVNNSVVMIQPSLISYSFNAPPEPALLDVASISADRILLLDAYFSVVVFHGMTIAQWRNMGYHNQPEHQAFAQLLQAPHDDAQAIITERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSANEAPPGGDIIFTDDVSLQVFVEHLQRLAVQS
I1QZR8______________DAVRLTWNAWPRSKVEASRCVVPLAAAISPVRSPESLASPPLPYPPLRCKPPCSALLNPFARVDFAAKIWICPLCFSRNHFPPHYAAISESNVPAELFPQCSTVEYLLAGAAPAAGVPLHQGGPPAPPPPVFLFVIDTCVIEEELEYVKMSMRKAVALLPEHALVGLVTFGTQVHLHELGFSDLSKIYVFRGTKEISKEQILDQLGLAGAGRPGFPKMPQQPGGPQINGMHPPATAGVTRFLLPVSDCECTLSTLLDELQPDQWPVETGNRAIRCTGVALSVAAGLLGACMPGTGARIIALLGGPCTEGPGMIVSKDLSEPVRSHKDLDKDAAPHFQKAVKFYDGLAKQLVSQGHVLDVFASALDQVGLAEMKVAIERTGGLVVLSESFGHSVFKDSFKRIFEGGEQSLDLSFNGTLEINCSKDIKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSLTVFFDVSPSERSSQPGHQ-NPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEELVEGFDQETAAVVLARYISLKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDSPPSPVFLDVASIAADRILLLDAYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQAPHEEAQIIIKGRFPAPRLVVCDQHGSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDDVSFQVFCEHLQRLAVQS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
326		62		37	1.0
510	14			85	0.993533
512		57		42	1.0
514		85		14	0.993533
591	11	88			0.923564
732			88	11	0.923564
936		85	14		0.993533
984	14	85			0.993533
985		14		85	0.993533
986		14		85	0.993533
989		14		85	0.993533
1375	20	80			0.995493
1378	80			20	0.995493
1448		33		66	1.0
1454	50		50		1.0
1490		40		60	1.0
1491	20		80		0.995493
1493	80			20	0.995493
1550		80		20	0.999996
1561	10			90	0.90298
1562		10	90		0.90298
1588	12		87		0.992554
1732	87	12			0.992554
1824	12		87		0.992554
2159	90		10		0.90298
2267		88		11	0.923564
2584			76	23	1.0
2718	92			7	0.999602

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain