SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5614

Length: 2438 nt

UniGene Fasta

>sp_v3.0_unigene5614
CGTCGTGAGCTTGGCTGTTACTCTGGCTATTAAAATATGTTGTAAGAGGCGGTCTGTATAACTGGCCTCGTGTGGCTGGGGCAAATCTCCAGATTAACCCACTGGTATGGTTAAAGCAATACGAAAAAATGGTTTATGTAAAAAATAAATATAGGGAGACCACATAGCGACATTCGAGTCTCTATTTGGACGAGCAGTTTTCGTCCAAGGAACACCATAAATATCGCCATGTTTCTTACATAATGCAACATGGTAGAGATCCAGCACAGTCATGGGGATGGGATTCAGAAAGTCCTCGGCTGGAGCAAATAGGGAGGTTTAGCCGTGATCTGGGCGTATTCTAACAGTAGCTTACATGCATTTCGAGTAATCAATATCAAACTTGGTGCACTGTTAGCTGGAGAACTGATCCACATAAATCCCAGTGGGTGGCGAAGTGCTTGTTTTTCGAGGGTTGGGGTGTGTTCAGTATCGAAAGGTTTGGATTTTGTTGGTTGGGGTGTGTTCAGTATCGAAAAGGTTTGGATTTTGTTGGTGTTTGCCACAAAAGACACCCATTTCTGAGATCTGTTGAAGGAATGTTTGAGCATTCAGAGATGATTAGATTACAGCAACAAAAATCATTCTTGAGGAGAGGTGTGTCAAGTTGCTTTTCTTCATACAGAAATTGGTTCATTTTGCTATGGGTGGTGGGTTTTGGATCCGTGTTTCTCTGGCAGAGAAATATAGTGGAAGGCATCCGGTTTTTTCGGTTTAACATACCCCGGCCGATACCTAGGTTGAGGCCTCATGTATTTAATCTGACTGATTTTGGGGGCGTTGGAGATGGCATATGGATAAATACAAAGGCATTTGAGGATGCTGTGGCTGCGATTGCAAAGTTGGGGAATGAAGGGGGGCAGCTTAATGTGCAGGCTGGAGTGTGGTTGACAGCACCGTTTAATCTGACAAGTCATATGACTTTGTTCCTCGCAGAAGATGCTGTTATTCTTGGTGTTGAGGATGAAAAATATTGGCCATTGATGCCGCCATTACCATCATATGGCTATGGAAGAGAGCATCCTGGGCCACGTTATGGCAGTCTTATTCATGGGCAGCATCTTCAGGACGTTGTGATTACTGGTTACAATGGTACCATAGATGGTCAAGGGCAAAGTTGGTGGAAAAAGTTTCGTCAAAAACAGATGACACACACTAGAGGGCTTCTTCTGCAGTTCATGTGGTGCAGCGACATTGAGATTTCAAATATTACTCTGCGCAATTCTCCATTTTGGACACTTCACCCATATGACTGTCAAAATGTTCGTATTAGCGGGCTGACTATCTTGGCCCCACTTGATGCTCCAAATACGGATGGAATTGATCCAGATTCTTGTCAAAATGTTACTATTGAAAACTGCTACATAAGTGTTGGCGATGATTGCATAGCAATAAAGAGTGGTTGGGATCAATATGGAATAGCATATGCTCGGCCATCTGCAAACATTTTTATCCGGAATCTCATGCTTCGAAGCAGAGTAAGTGCAGCAGTATCAATTGGGAGTGAAATGTCTGGAGGAGTCTCCAATGTCACGGTTGATAATGTTCATGTTTGGCAGTCAAGACGTGGCATGAGGATCAAAACTAGTCCTGGAAGAGGGGGATATGTGCGAGAAATATTTTACAGCAATCTCACATTTGATACTGTTCGAGTGGGAATTGTAATTAAGACTGATTATCCAGAACACCCAGATGAGAAATATGACCCAAAAGCTCTTCCAAAGGTCGAGAACATAATCTACCAGGGGTTGCGTGGGAGAGATGTACGTGTGCCTGTTAGAATGTCTGGCAGTGAGGAAATACCTTTAAAAAATGTAGAATTTCGGGACATGAATGTTGGAGTGTCATATAAGAGGAAAAATATTTTTCAGTGTTCTTTCATTTATGGAAGAGCTATAGGAAACATATTTCCAAGGCCATGTGAAAATTTGGCTCTATATGATGACTATGGGAAGTTGGTTCGTCCTGCCACTAAACCTAATGAATCTACCATAGACTACGATTTTTGAATCTGTTGGGGATAATGTGGCCAATTCTTTTTACATCATGGCATATATAGGTTGCCCTTGATGCAAACCAAATCACAGTTGGAGGTTCAGAAGTTCATAAATGAAATCAAATCGATTTGAAGATTCAGATATTTGTAACTGAATCTTATTGTAATCCTTGCTGAGTTCACTGGTGTACACAATTTTCTTCAGAATATAATGGAGAGCTGTTGTCTCCACCTGCGTGTAAAAGAACAGTGTTTATTGAAAATCTCTGAAGTTGTGATTCCCTGTGCAGAATCCACTTCTGAGAGCAGTTACCACCAAATTTACCCCCAAATTTTGAAATTTTATGTTGTATCTAATATAGGAAACTGTTTTGTAGTCCTTAAATTTCTAAAATATGCCTGC

Ace file of the UniGene sp_v3.0_unigene5614

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RR75_RICCO	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	Polygalacturonase, putative	-	-	7.005e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	2.599e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		2.599e-13	%
Sma3	Starch and sucrose metabolism	00500		2.599e-13	%
Sma3	Metabolic pathways	01100		2.599e-13	%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	2.565e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	2.565e-09	%
Sma3	Starch and sucrose metabolism	00500	2.565e-09	%
Sma3	Metabolic pathways	01100	2.565e-09	%

Source	Gene names
Sma3	6J23.27; 8F2.19; AT3g62110/T17J13_70; AT4g23500; AT4g23820; At1g19170; At2g23900; At3g06770; At3g16850; At3g42950; At3g48950; At3g61490; At3g62110; At4g23500; At4g23820; At4g23820/F9D16.290; At4g33440; At5g41870; At5g49215; B1040D09.13-1; B1040D09.13-2; F

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G19170.1	Pectin lyase-like superfamily protein chr1:6616777-6618875 FORWARD LENGTH=506	63%
RefSeq	Arabidopsis thaliana	NP_173351.1	Pectin lyase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002324728.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg:

Fln protein: MFEHSEMIRLQQQKSFLRRGVSSCFSSYRNWFILLWVVGFGSVFLWQRNIVEGIRFFRFNIPRPIPRLRPHVFNLTDFGGVGDGIWINTKAFEDAVAAIAKLGNEGGQLNVQAGVWLTAPFNLTSHMTLFLAEDAVILGVEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLQDVVITGYNGTIDGQGQSWWKKFRQKQMTHTRGLLLQFMWCSDIEISNITLRNSPFWTLHPYDCQNVRISGLTILAPLDAPNTDGIDPDSCQNVTIENCYISVGDDCIAIKSGWDQYGIAYARPSANIFIRNLMLRSRVSAAVSIGSEMSGGVSNVTVDNVHVWQSRRGMRIKTSPGRGGYVREIFYSNLTFDTVRVGIVIKTDYPEHPDEKYDPKALPKVENIIYQGLRGRDVRVPVRMSGSEEIPLKNVEFRDMNVGVSYKRKNIFQCSFIYGRAIGNIFPRPCENLALYDDYGKLVRPATKPNESTIDYDF*

Protein Length: 491

Fln nts: CGTCGTGAGCTTGGCTGTTACTCTGGCTATTAAAATATGTTGTAAGAGGCGGTCTGTATAACTGGCCTCGTGTGGCTGGGGCAAATCTCCAGATTAACCCACTGGTATGGTTAAAGCAATACGAAAAAATGGTTTATGTAAAAAATAAATATAGGGAGACCACATAGCGACATTCGAGTCTCTATTTGGACGAGCAGTTTTCGTCCAAGGAACACCATAAATATCGCCATGTTTCTTACATAATGCAACATGGTAGAGATCCAGCACAGTCATGGGGATGGGATTCAGAAAGTCCTCGGCTGGAGCAAATAGGGAGGTTTAGCCGTGATCTGGGCGTATTCTAACAGTAGCTTACATGCATTTCGAGTAATCAATATCAAACTTGGTGCACTGTTAGCTGGAGAACTGATCCACATAAATCCCAGTGGGTGGCGAAGTGCTTGTTTTTCGAGGGTTGGGGTGTGTTCAGTATCGAAAGGTTTGGATTTTGTTGGTTGGGGTGTGTTCAGTATCGAAAAGGTTTGGATTTTGTTGGTGTTTGCCACAAAAGACACCCATTTCTGAGATCTGTTGAAGGA_-_ATGTTTGAGCATTCAGAGATGATTAGATTACAGCAACAAAAATCATTCTTGAGGAGAGGTGTGTCAAGTTGCTTTTCTTCATACAGAAATTGGTTCATTTTGCTATGGGTGGTGGGTTTTGGATCCGTGTTTCTCTGGCAGAGAAATATAGTGGAAGGCATCCGGTTTTTTCGGTTTAACATACCCCGGCCGATACCTAGGTTGAGGCCTCATGTATTTAATCTGACTGATTTTGGGGGCGTTGGAGATGGCATATGGATAAATACAAAGGCATTTGAGGATGCTGTGGCTGCGATTGCAAAGTTGGGGAATGAAGGGGGGCAGCTTAATGTGCAGGCTGGAGTGTGGTTGACAGCACCGTTTAATCTGACAAGTCATATGACTTTGTTCCTCGCAGAAGATGCTGTTATTCTTGGTGTTGAGGATGAAAAATATTGGCCATTGATGCCGCCATTACCATCATATGGCTATGGAAGAGAGCATCCTGGGCCACGTTATGGCAGTCTTATTCATGGGCAGCATCTTCAGGACGTTGTGATTACTGGTTACAATGGTACCATAGATGGTCAAGGGCAAAGTTGGTGGAAAAAGTTTCGTCAAAAACAGATGACACACACTAGAGGGCTTCTTCTGCAGTTCATGTGGTGCAGCGACATTGAGATTTCAAATATTACTCTGCGCAATTCTCCATTTTGGACACTTCACCCATATGACTGTCAAAATGTTCGTATTAGCGGGCTGACTATCTTGGCCCCACTTGATGCTCCAAATACGGATGGAATTGATCCAGATTCTTGTCAAAATGTTACTATTGAAAACTGCTACATAAGTGTTGGCGATGATTGCATAGCAATAAAGAGTGGTTGGGATCAATATGGAATAGCATATGCTCGGCCATCTGCAAACATTTTTATCCGGAATCTCATGCTTCGAAGCAGAGTAAGTGCAGCAGTATCAATTGGGAGTGAAATGTCTGGAGGAGTCTCCAATGTCACGGTTGATAATGTTCATGTTTGGCAGTCAAGACGTGGCATGAGGATCAAAACTAGTCCTGGAAGAGGGGGATATGTGCGAGAAATATTTTACAGCAATCTCACATTTGATACTGTTCGAGTGGGAATTGTAATTAAGACTGATTATCCAGAACACCCAGATGAGAAATATGACCCAAAAGCTCTTCCAAAGGTCGAGAACATAATCTACCAGGGGTTGCGTGGGAGAGATGTACGTGTGCCTGTTAGAATGTCTGGCAGTGAGGAAATACCTTTAAAAAATGTAGAATTTCGGGACATGAATGTTGGAGTGTCATATAAGAGGAAAAATATTTTTCAGTGTTCTTTCATTTATGGAAGAGCTATAGGAAACATATTTCCAAGGCCATGTGAAAATTTGGCTCTATATGATGACTATGGGAAGTTGGTTCGTCCTGCCACTAAACCTAATGAATCTACCATAGACTACGATTTTTGA___ATCTGTTGGGGATAATGTGGCCAATTCTTTTTACATCATGGCATATATAGGTTGCCCTTGATGCAAACCAAATCACAGTTGGAGGTTCAGAAGTTCATAAATGAAATCAAATCGATTTGAAGATTCAGATATTTGTAACTGAATCTTATTGTAATCCTTGCTGAGTTCACTGGTGTACACAATTTTCTTCAGAATATAATGGAGAGCTGTTGTCTCCACCTGCGTGTAAAAGAACAGTGTTTATTGAAAATCTCTGAAGTTGTGATTCCCTGTGCAGAATCCACTTCTGAGAGCAGTTACCACCAAATTTACCCCCAAATTTTGAAATTTTATGTTGTATCTAATATAGGAAACTGTTTTGTAGTCCTTAAATTTCTAAAATATGCCTGC

Fln Alignment:

Contig5614___PRLRPHVFNLTDFGGVGDGIWINTKAFEDAVAAIAKLGNEGG-QLNVQAGVWLTAPFNLTSHMTLFLAEDAVILGVEDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLQDVVITGYNGTIDGQGQSWWKKFRQKQMTHTRGLLLQFMWCSDIEISNITLRNSPFWTLHPYDCQNVRISGLTILAPLDAPNTDGIDPDSCQNVTIENCYISVGDDCIAIKSGWDQYGIAYARPSANIFIRNLMLRSRVSAAVSIGSEMSGGVSNVTVDNVHVWQSRRGMRIKTSPGRGGYVREIFYSNLTFDTVRVGIVIKTDYPEHPDEKYDPKALPKVENIIYQGLRGRDVRVPVRMSGSEEIPLKNVEFRDMNVGVSYKRKNI-FQCSFIYGRAIGNIFPRPCENLALYDDYGKLVRPATKPNEST
B8LQW0______________PSCRAQSVSIAEFGGVGDGTTVNTEAFRKAIEHLSEFSETGGGQLYIPPGRWLTGSFNLTDHFTLYLHKEAVILGSQDLEDWPLIPPLPSYGMGRDAPGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHKKILKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYDPNALPAVERISYSNIVATNVSVAGKLDGIANAPFKDICLTNVTITMAAKSKKYPWNCTYIHGLS-NAVYPQPCSLLEERPAEGDAFCPSPQELDTT

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
254		28		71	1.0
258	71	28			1.0
262			71	28	1.0
292	10		90		0.90298
353		11		88	0.923564
357	11			88	0.923564
359	88			11	0.923564
412		25		75	1.0
424	85			14	0.993533
427		85	14		0.993533
616	33		66		1.0
709	12	87			0.992554
710	12		87		0.992554
721	14		85		0.993533
724			85	14	0.993533
725	85			14	0.993533
899			75	25	0.996473
1148		14	85		0.993533
1149	16		83		0.994512
1151		83		16	0.994512
1229		12		87	0.992554
1231		87		12	0.992554
1232	87	12			0.992554
1234		87		12	0.992554
1235	12		87		0.992554
1238	87	12			0.992554
1244	87	12			0.992554
1246			12	87	0.992554
1250	87	12			0.992554
1251	87			12	0.992554
1252		12		87	0.992554
1255		12		87	0.992554
1258	12			87	0.992554
1299	22		77		0.999999
1303	88	11			0.923564
1305	88			11	0.923564
1433	11		88		0.923564
1436	88			11	0.923564
1616	75		25		0.996473
1621	25		75		0.996473
1636		50		50	1.0
1736			85	14	0.993533
1737	85		14		0.993533
1738			14	85	0.993533
1796		85		14	0.993533
1865	12			87	0.992554
1867			12	87	0.992554
1868		87	12		0.992554
2120	14	85			0.993533
2360	55			44	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain