SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5609

Length: 2223 nt

UniGene Fasta

>sp_v3.0_unigene5609
CGTCGTGACCTTGGCTGTCACTCATCTTCTCAACAGCACTCACTACCATCTTCTCAACAGTTTCACTCACACCAGACACAGCTGCTGGCCCCGTCACAACAGCATGTGCACAATCAATATCCACAGTTTCTTCATTCACAGCATCTACAACAGTCAATTCAGTTGCCTGAGTTACGAGGGCAGTTGTTGCAGTCAACTTCTAGTCGATCCCAGGCGGCAGCAAACATGCCCTTATCGACGAAAGCTCAGTCTGGATTTACTGAGACTGATGCCCCTTCTTGTTCGACATCAACATCTGCAAATAGTTACCCACTGCAGAATATCTTAACTCGTGCAAATCAATCTGCAATTATGAGTGAGGAAAAACCTCAATGTGCAAACATGCCAAGGCATAGTGCAAGTAGCACACAAGCTGCACTTCCTGCTTCTAACTTCTTGGGAGATCCTCAGGTCACTTCATTGTTACCTTCTATAAAAGAACCAAATCAGGCTGCATTGCAGACTTATATGAGTGCTCAAATGGGTCAGATGGAGGCGTCATCATCTTCTGGAACTTCATATTCTCTTACTCCTGATGCTTCCATTTCACAAAATTTACCGTTGCTACCTCTCCAGTCATCTCCATTCTTGCTTCAAGATGTTTCTCATGACAATGACATTCAGACTGATCCCAGAAGGAACGTTCTCCCTACCTTCAGCAATGGCAAGGATATCCAAGCGCATGCCTCAGCAACGATAAGTTCACAAACATTTAGTGTTCCAGATCTGCCATTGAACTCGGGGGTTACAAGTGATCTGGGAATCAGTGATAGCAGTATCTTGCAGAGAGGAGGGTCCTGGCAGCAACCCCCTCCACCTGTGAGGACCTATACCAAGGTATACAAGCTTGGTTCAGTTGGTAGGTCAATTGATGTCACACGATGCAAAAACTATGATGAACTTCGACGTGAGCTCGCTCGTATGTTTGGTCTAGAAGGTCAGCTTGAAGATCCTCATCGGTCAAGTTGGCAGCTTGTGTTTGTGGACAATGAGAATGATGTACTTCTTGTTGGAGATGATCCGTGGGAGGAATTCGTGAGTTGTGTCCGATGCATCAGAATACTGTCACCTTCAGAAGTCTTGCAAATGAGTCAGGAGGGCACACTCTTAAACAGTTTACCACTACAGCAACAAGCTGGTAGCAGCTCTGATGGTGGCATTGTGTGGAGGGATCACTGTGACCAGAATTCTACCAATCCCTCAGTAGGATCTTTCGAATATTAGTGCCCAAATGGTATTGTCATTTGTCATTGTGGAGCAGCGCAGAGTTGCCTTTCTTGGAAATAAATGATATTTTATGGTGCACCAACATAGTTTCAAAGATCATTTCCTGTGCACCATCTGAAGATGTGCTTTATGCACATCAAAATTAAGTGGAACTGTTTTCTTGAATATTGAATGGTATGTGGCAATTCAGTGACTAACACTTCATATGTTATGTCAGAAGAGCTACTGTGACCAGTGGGCAGTGGAAGGTCTCATGAAAATTTCCCAGGTTGTATTCAAGAGAAACGTTGGATCTTTTATTTCATTCTTTTGCATCGAGCAGGAGTTCAGCATATGACATGTGACATCAACAGTTCGAGGTAATTTTGCCAGAAGGACAAAAAGATACCACTGCTTCTGACCACTTTTTGGCTGTACACTCGTTTGATTGCCAGGATGTAATATGGAGGTTTTCACAGCATTTCCATCTCAAACGTGCGTGGGTGGATGTTGGAGCTGATTACAAGGGGAATTTGAAGTAAAGTAACCCCAGTAAGAATGATGATAATAGAACTTTTGAAATTTTGTCTATGCATGATCGTTATTGCTAAGTACGGGTGAAGTTGTAGATGCAAACCACGAGGCATCTGCTGATATGAGAGCATTGTTACGCAATTCCAATGAAACATGGAAAATATGTTTCTGTGTACATACATCTTTGAATGAAGGCATTTCATCTTGTTCACAACTTGCTGTTTGTATTCTGAAATATTTGTGTTTCTTGGCATAGTTGAGGGATTTTTACTCCGATGTTTCCTGAATGAATGCATAAGCCATACGTTTTCATTTATGGCAGAATGGTACGATTATAAAATTATTTGAACAGCTTTGGATGCCTTCGATGTATGAACATGAGCAATTGTCAATACTGCTGTACTATTTCATCTTTTAATCATCATTGTTAATCCAAGATGAGGT

Ace file of the UniGene sp_v3.0_unigene5609

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative auxin response factor 5/7 (Fragment) n=1 Tax=Gnetum gnemon RepID=E1UHX8_GNEGN	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Auxin response factor, putative	-	-	1.157e-06	-

Source	Gene names
Sma3	ARF11; ARF5; ARF8; GSVIVT00014459001; GSVIVT00017021001; GSVIVT00023446001; MP; OSIGBa0099L20.10; OsI_017171; OsJ_16524; PHYPADRAFT_127229; PHYPADRAFT_135414; PHYPADRAFT_170581; PHYPADRAFT_198176; PHYPADRAFT_198819; PHYPADRAFT_216765; PHYPADRAFT_29385; PO

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to hormone stimulus	GO:0009725	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G19220.1	ARF19, IAA22, ARF11 auxin response factor 19 chr1:6628395-6632779 REVERSE LENGTH=1086	0.0	53%
RefSeq	Arabidopsis thaliana	NP_173356.1	auxin response factor 19 [Arabidopsis thaliana]	0.0	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: your sequence is shorter than subject: 421 - 450

Fln protein: RRDLGCHSSSQQHSLPSSQQFHSHQTQLLAPSQQHVHNQYPQFLHSQHLQQSIQLPELRGQLLQSTSSRSQAAANMPLSTKAQSGFTETDAPSCSTSTSANSYPLQNILTRANQSAIMSEEKPQCANMPRHSASSTQAALPASNFLGDPQVTSLLPSIKEPNQAALQTYMSAQMGQMEASSSSGTSYSLTPDASISQNLPLLPLQSSPFLLQDVSHDNDIQTDPRRNVLPTFSNGKDIQAHASATISSQTFSVPDLPLNSGVTSDLGISDSSILQRGGSWQQPPPPVRTYTKVYKLGSVGRSIDVTRCKNYDELRRELARMFGLEGQLEDPHRSSWQLVFVDNENDVLLVGDDPWEEFVSCVRCIRILSPSEVLQMSQEGTLLNSLPLQQQAGSSSDGGIVWRDHCDQNSTNPSVGSFEY*

Protein Length: 422

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCTCAACAGCACTCACTACCATCTTCTCAACAGTTTCACTCACACCAGACACAGCTGCTGGCCCCGTCACAACAGCATGTGCACAATCAATATCCACAGTTTCTTCATTCACAGCATCTACAACAGTCAATTCAGTTGCCTGAGTTACGAGGGCAGTTGTTGCAGTCAACTTCTAGTCGATCCCAGGCGGCAGCAAACATGCCCTTATCGACGAAAGCTCAGTCTGGATTTACTGAGACTGATGCCCCTTCTTGTTCGACATCAACATCTGCAAATAGTTACCCACTGCAGAATATCTTAACTCGTGCAAATCAATCTGCAATTATGAGTGAGGAAAAACCTCAATGTGCAAACATGCCAAGGCATAGTGCAAGTAGCACACAAGCTGCACTTCCTGCTTCTAACTTCTTGGGAGATCCTCAGGTCACTTCATTGTTACCTTCTATAAAAGAACCAAATCAGGCTGCATTGCAGACTTATATGAGTGCTCAAATGGGTCAGATGGAGGCGTCATCATCTTCTGGAACTTCATATTCTCTTACTCCTGATGCTTCCATTTCACAAAATTTACCGTTGCTACCTCTCCAGTCATCTCCATTCTTGCTTCAAGATGTTTCTCATGACAATGACATTCAGACTGATCCCAGAAGGAACGTTCTCCCTACCTTCAGCAATGGCAAGGATATCCAAGCGCATGCCTCAGCAACGATAAGTTCACAAACATTTAGTGTTCCAGATCTGCCATTGAACTCGGGGGTTACAAGTGATCTGGGAATCAGTGATAGCAGTATCTTGCAGAGAGGAGGGTCCTGGCAGCAACCCCCTCCACCTGTGAGGACCTATACCAAGGTATACAAGCTTGGTTCAGTTGGTAGGTCAATTGATGTCACACGATGCAAAAACTATGATGAACTTCGACGTGAGCTCGCTCGTATGTTTGGTCTAGAAGGTCAGCTTGAAGATCCTCATCGGTCAAGTTGGCAGCTTGTGTTTGTGGACAATGAGAATGATGTACTTCTTGTTGGAGATGATCCGTGGGAGGAATTCGTGAGTTGTGTCCGATGCATCAGAATACTGTCACCTTCAGAAGTCTTGCAAATGAGTCAGGAGGGCACACTCTTAAACAGTTTACCACTACAGCAACAAGCTGGTAGCAGCTCTGATGGTGGCATTGTGTGGAGGGATCACTGTGACCAGAATTCTACCAATCCCTCAGTAGGATCTTTCGAATATTAG___TGCCCAAATGGTATTGTCATTTGTCATTGTGGAGCAGCGCAGAGTTGCCTTTCTTGGAAATAAATGATATTTTATGGTGCACCAACATAGTTTCAAAGATCATTTCCTGTGCACCATCTGAAGATGTGCTTTATGCACATCAAAATTAAGTGGAACTGTTTTCTTGAATATTGAATGGTATGTGGCAATTCAGTGACTAACACTTCATATGTTATGTCAGAAGAGCTACTGTGACCAGTGGGCAGTGGAAGGTCTCATGAAAATTTCCCAGGTTGTATTCAAGAGAAACGTTGGATCTTTTATTTCATTCTTTTGCATCGAGCAGGAGTTCAGCATATGACATGTGACATCAACAGTTCGAGGTAATTTTGCCAGAAGGACAAAAAGATACCACTGCTTCTGACCACTTTTTGGCTGTACACTCGTTTGATTGCCAGGATGTAATATGGAGGTTTTCACAGCATTTCCATCTCAAACGTGCGTGGGTGGATGTTGGAGCTGATTACAAGGGGAATTTGAAGTAAAGTAACCCCAGTAAGAATGATGATAATAGAACTTTTGAAATTTTGTCTATGCATGATCGTTATTGCTAAGTACGGGTGAAGTTGTAGATGCAAACCACGAGGCATCTGCTGATATGAGAGCATTGTTACGCAATTCCAATGAAACATGGAAAATATGTTTCTGTGTACATACATCTTTGAATGAAGGCATTTCATCTTGTTCACAACTTGCTGTTTGTATTCTGAAATATTTGTGTTTCTTGGCATAGTTGAGGGATTTTTACTCCGATGTTTCCTGAATGAATGCATAAGCCATACGTTTTCATTTATGGCAGAATGGTACGATTATAAAATTATTTGAACAGCTTTGGATGCCTTCGATGTATGAACATGAGCAATTGTCAATACTGCTGTACTATTTCATCTTTTAATCATCATTGTTAATCCAAGATGAGGT

Fln Alignment:

Contig5609___RTYTKVYKLGS-VGRSIDVTRCKNYDELRRELARMFGLEGQLEDPHRSSWQLVFVDNENDVLLVGDDPWEEFVSCVRCIRILSPSEVLQMSQE
C0PTP3______________RSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIEGELEDPNKG-WQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQ

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1808			66	33	0.997452
1809	66		33		0.997452
1810	66		33		0.997452
1811			33	66	0.997452
1826		25		75	0.996473
1827			25	75	0.996473
1829		25		75	0.996473
1831	75			25	0.996473
1832	75		25		0.996473
1834		25		75	0.996473
1835		25		75	0.996473
1839			25	75	0.996473
1842	75		25		0.996473
1848	25		75		0.996473
2021	7			92	0.999664
2038	88		11		1.0
2092		11		88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain