SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5608

Length: 2543 nt

UniGene Fasta

>sp_v3.0_unigene5608
ATGGGGATTGGTGCGGATGCTATCGTCGTGACCTTGGCTGTCACTCAAGTTTTATTCAGTCGTTCTGTTCACGCAATGCAGCATAGGAGGTTTGAATGGTTGGTGGAAATGGTGGTGGGGGCGATGCAGTCCAATTGTCAGACAGACGAAGCGAACTATATATTTTATCTTCATTCATGAGAATCGATTGTGAGAAACGTAATAATATGCTTCCTACCATTTCACTCATGAGAATCGATTGTGAGAAACGTAATAATATGCTTCCTACCATTTCACTGCAAGGCCAACAGCCAGTGTTCATCCAGAACATTAGTTTTCGGCGAACCGAGTCCTTCCATTCCACAGGAGAAAACGGATTCGATTTGCTGTAAGATTTCGTCTGATCAGCTTTTGTTTGTCGAAGTTGCGCGATATGGGGGGAATGGTGCTGCTGATGCTACTCGGCTCTTTTTTATTACTTTGTGATGGTGTCAGAGCTGAGCAATTGCGGGCGAGCACACCGCCGAGAGGATGGAATTCATACGATTCGTTCTCTTGGATTATCGCGGAGGATGAATTTATGGATAACGCACAGATCATGGCTGATGAATTGCTCCGCTTCGGATACCAGTATGCGGTGGTGGATTTCTTGTGGTACAGGAAACGGGAAAAGGGAGCGTCGGTGAGTTCTCCGGGGCATGATTTGATAGATGAATGGGGACGCCCTGTTCCAGACCCTGCACGGTGGCCCTCCACTTCTGGTGGCCGAGGCTTCAAGCCCATTGCCGATTCTATCCATCAGATGGGGCTCAAGTTCGGTATCCACGTCATGCGCGGCATCAGTACCCAGGCCGTAAAAGCTAACACCCCCATTCTGGGACCTCTGGGGATGCCATATGAAGAGAATGGACGGACTTTTAGAGCGAGAGACATAGCGTTGACTAGGGACAAATGTGGGTGGATGCCCGCTTGCTTCGTGAGCGTCAACACCAACATGGGTGCAGGAAGAGCTTTCCTCCGCTCCCTCTATACCCAGTATGCTGACTGGGGTGTCGATTTTGTAAAGCACGATTGCATTTTTGGAGATGATCTGAATGTAAACGAGATCACCACAGTCTCTGAGATTCTTAAAGAGCTCGAACGTCCAATTTTATACTCCCTTTCACCAGGAACGCATGCGACACCAAATATGGCTAGGAAGATTAATGGCCTAGTTAACATGTATAGAGTGACTGCAGATGATTGGGACTCATGGAGAGATGTAAAAACACACTTTGATGTGTCAAGGGATTTTGCAGCAGGTGGTTTAATAGGAGCAGAAGGATTATTTGGACAATCATGGCCAGACTTGGACATGCTTCCATTGGGGTGGTTAACTGATCCAGGTGTAAATCAAGGTCCCCATCGCTCTTGTGCTCTTACTATTGAGGAGCAAAGATCTCAGATGACATTATGGGCTATGGCAAAATCTCCTCTTATGTTTGGTGGTGACTTGAGGAACATTGATGATGTAACAACGAGTCTTATCACACATCCTACCTTGTTGGCTATAAATGCCTATGGCACTAATAATAAAGAGTTTTCGGGCATCAGTTTCATTCGAGGGAGTGCTCACACTGAAGTAAAGGCAAGTCAGGGTTCCTTTAAACCCATCTCTGAACAGCTAGTAAGGCTTTCAAACTGCCAAAGGGAGAATACAAAGAATTGGACCATTGAAACTAAGAATAGAAATATGAATAAGGTTTGTTGGAATGATGGCTGGGCTATGACATCCCAGCCGCAAATGTGCCTACATTGGAGAGTTCAACCCAATGCATCATTGGATTGGAACATTATAAGGTATGGAGAGCATAATGTGAGACAAAAGGACAAGGAGAATAATGATGGACAATCTTATGTATTAGCATCTCTCATGGAGGAAGTATGTTTAGATTCTTCTCCAAATAAGGCATTGACATTTGGCCGAGTAAAAAGTAATTACTTTGCTCCATGTAATTACCACGAGAGCCAGGAGTGGGAATTGACACCCGACGGAGCCCTCCTTAATAGTTATAGTGGCCTTTGTGCACGTGTTTCTAAAGTGGAAGCCACAAATGAAGTAGACGAGGCACGTGCTTGGGTAGCAAATGGTTCAACAGGAGAAATTTACATTGCCTTCTTTAATTTGGGTCCCAACAGACTTACAATATCTACAGAGTTGAAGGATGTCCTAAACATGTCACACATAAGAGATAAGATGGGCAAGGATAAAGTAATAGACAATGAACATCAGCTTGAAAGTAAATGTTCAGGTTTTGATGTTTGGAACAATCAAGATCTTGGAGTAGTAACTGATAAACTAGTTTCAGATGTTCAAAGCCATGGTTGTGCTTTATTCATTTTAACATGTAGTTAATTTTATAATTATTCTTACACTCAATTTGTATGCCATTCAGAGAGTTGTATTAGATAGAATCATACCTCTAAACTGTAAATAAAGTTGGCATGATTATTTGGAAACTTTCAGCATTACTGATATTGCAAAATTACAAAAATTTAGTATGTAAAAACAAAATTCCCCATTG

Ace file of the UniGene sp_v3.0_unigene5608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Melibiase family protein [Arabidopsis thaliana] gb\|AEE77151.1\| Melibiase family protein [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26380.1	Melibiase family protein chr3:9660140-9663145 FORWARD LENGTH=647	48%
RefSeq	Arabidopsis thaliana	NP_189269.2	Melibiase family protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002314588.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR2

Fln msg:

Fln protein: MGGMVLLMLLGSFLLLCDGVRAEQLRASTPPRGWNSYDSFSWIIAEDEFMDNAQIMADELLRFGYQYAVVDFLWYRKREKGASVSSPGHDLIDEWGRPVPDPARWPSTSGGRGFKPIADSIHQMGLKFGIHVMRGISTQAVKANTPILGPLGMPYEENGRTFRARDIALTRDKCGWMPACFVSVNTNMGAGRAFLRSLYTQYADWGVDFVKHDCIFGDDLNVNEITTVSEILKELERPILYSLSPGTHATPNMARKINGLVNMYRVTADDWDSWRDVKTHFDVSRDFAAGGLIGAEGLFGQSWPDLDMLPLGWLTDPGVNQGPHRSCALTIEEQRSQMTLWAMAKSPLMFGGDLRNIDDVTTSLITHPTLLAINAYGTNNKEFSGISFIRGSAHTEVKASQGSFKPISEQLVRLSNCQRENTKNWTIETKNRNMNKVCWNDGWAMTSQPQMCLHWRVQPNASLDWNIIRYGEHNVRQKDKENNDGQSYVLASLMEEVCLDSSPNKALTFGRVKSNYFAPCNYHESQEWELTPDGALLNSYSGLCARVSKVEATNEVDEARAWVANGSTGEIYIAFFNLGPNRLTISTELKDVLNMSHIRDKMGKDKVIDNEHQLESKCSGFDVWNNQDLGVVTDKLVSDVQSHGCALFILTCS*

Protein Length: 655

Fln nts: ATGGGGATTGGTGCGGATGCTATCGTCGTGACCTTGGCTGTCACTCAAGTTTTATTCAGTCGTTCTGTTCACGCAATGCAGCATAGGAGGTTTGAATGGTTGGTGGAAATGGTGGTGGGGGCGATGCAGTCCAATTGTCAGACAGACGAAGCGAACTATATATTTTATCTTCATTCATGAGAATCGATTGTGAGAAACGTAATAATATGCTTCCTACCATTTCACTCATGAGAATCGATTGTGAGAAACGTAATAATATGCTTCCTACCATTTCACTGCAAGGCCAACAGCCAGTGTTCATCCAGAACATTAGTTTTCGGCGAACCGAGTCCTTCCATTCCACAGGAGAAAACGGATTCGATTTGCTGTAAGATTTCGTCTGATCAGCTTTTGTTTGTCGAAGTTGCGCGAT_-_ATGGGGGGAATGGTGCTGCTGATGCTACTCGGCTCTTTTTTATTACTTTGTGATGGTGTCAGAGCTGAGCAATTGCGGGCGAGCACACCGCCGAGAGGATGGAATTCATACGATTCGTTCTCTTGGATTATCGCGGAGGATGAATTTATGGATAACGCACAGATCATGGCTGATGAATTGCTCCGCTTCGGATACCAGTATGCGGTGGTGGATTTCTTGTGGTACAGGAAACGGGAAAAGGGAGCGTCGGTGAGTTCTCCGGGGCATGATTTGATAGATGAATGGGGACGCCCTGTTCCAGACCCTGCACGGTGGCCCTCCACTTCTGGTGGCCGAGGCTTCAAGCCCATTGCCGATTCTATCCATCAGATGGGGCTCAAGTTCGGTATCCACGTCATGCGCGGCATCAGTACCCAGGCCGTAAAAGCTAACACCCCCATTCTGGGACCTCTGGGGATGCCATATGAAGAGAATGGACGGACTTTTAGAGCGAGAGACATAGCGTTGACTAGGGACAAATGTGGGTGGATGCCCGCTTGCTTCGTGAGCGTCAACACCAACATGGGTGCAGGAAGAGCTTTCCTCCGCTCCCTCTATACCCAGTATGCTGACTGGGGTGTCGATTTTGTAAAGCACGATTGCATTTTTGGAGATGATCTGAATGTAAACGAGATCACCACAGTCTCTGAGATTCTTAAAGAGCTCGAACGTCCAATTTTATACTCCCTTTCACCAGGAACGCATGCGACACCAAATATGGCTAGGAAGATTAATGGCCTAGTTAACATGTATAGAGTGACTGCAGATGATTGGGACTCATGGAGAGATGTAAAAACACACTTTGATGTGTCAAGGGATTTTGCAGCAGGTGGTTTAATAGGAGCAGAAGGATTATTTGGACAATCATGGCCAGACTTGGACATGCTTCCATTGGGGTGGTTAACTGATCCAGGTGTAAATCAAGGTCCCCATCGCTCTTGTGCTCTTACTATTGAGGAGCAAAGATCTCAGATGACATTATGGGCTATGGCAAAATCTCCTCTTATGTTTGGTGGTGACTTGAGGAACATTGATGATGTAACAACGAGTCTTATCACACATCCTACCTTGTTGGCTATAAATGCCTATGGCACTAATAATAAAGAGTTTTCGGGCATCAGTTTCATTCGAGGGAGTGCTCACACTGAAGTAAAGGCAAGTCAGGGTTCCTTTAAACCCATCTCTGAACAGCTAGTAAGGCTTTCAAACTGCCAAAGGGAGAATACAAAGAATTGGACCATTGAAACTAAGAATAGAAATATGAATAAGGTTTGTTGGAATGATGGCTGGGCTATGACATCCCAGCCGCAAATGTGCCTACATTGGAGAGTTCAACCCAATGCATCATTGGATTGGAACATTATAAGGTATGGAGAGCATAATGTGAGACAAAAGGACAAGGAGAATAATGATGGACAATCTTATGTATTAGCATCTCTCATGGAGGAAGTATGTTTAGATTCTTCTCCAAATAAGGCATTGACATTTGGCCGAGTAAAAAGTAATTACTTTGCTCCATGTAATTACCACGAGAGCCAGGAGTGGGAATTGACACCCGACGGAGCCCTCCTTAATAGTTATAGTGGCCTTTGTGCACGTGTTTCTAAAGTGGAAGCCACAAATGAAGTAGACGAGGCACGTGCTTGGGTAGCAAATGGTTCAACAGGAGAAATTTACATTGCCTTCTTTAATTTGGGTCCCAACAGACTTACAATATCTACAGAGTTGAAGGATGTCCTAAACATGTCACACATAAGAGATAAGATGGGCAAGGATAAAGTAATAGACAATGAACATCAGCTTGAAAGTAAATGTTCAGGTTTTGATGTTTGGAACAATCAAGATCTTGGAGTAGTAACTGATAAACTAGTTTCAGATGTTCAAAGCCATGGTTGTGCTTTATTCATTTTAACATGTAGTTAA___TTTTATAATTATTCTTACACTCAATTTGTATGCCATTCAGAGAGTTGTATTAGATAGAATCATACCTCTAAACTGTAAATAAAGTTGGCATGATTATTTGGAAACTTTCAGCATTACTGATATTGCAAAATTACAAAAATTTAGTATGTAAAAACAAAATTCCCCATTG

Fln Alignment:

Contig5608___CDGVRAEQLRASTPPRGWNSYDSFSWIIAEDEFMDNAQIMADELLRFGYQYAVVDFLWYRKREKGASVSSPGHDLIDEWGRPVPDPARWPSTSGGRGFKPIADSIHQMGLKFGIHVMRGISTQAVKANTPILGPLGMPYEENGRTFRARDIALTRDKCGWMPACFVSVNTNMGAGRAFLRSLYTQYADWGVDFVKHDCIFGDDLNVNEITTVSEILKELERPILYSLSPGTHATPNMARKINGLVNMYRVTADDWDSWRDVKTHFDVSRDFAAGGLIGAEGLFGQSWPDLDMLPLGWLTDPGVNQGPHRSCALTIEEQRSQMTLWAMAKSPLMFGGDLRNIDDVTTSLITHPTLLAINAYGTNNKEFSGISFIRGSAHTEVKASQGSFKPISEQLVRLSNCQRENTKNWTIETKNRNMNKVCWNDGWAMTSQPQMCLHWRVQPNASLDWNIIRYGEHNVRQKDKENNDGQSYVLASLMEEVCLDSSPNKALTFGRVKSNYFAPCNYHESQEWELTPDGALLNSYSGLCARVSKVEATNEVDEARAWVANGSTGEIYIAFFNLGPNRLTISTELKDVLNMSHIRDKMGKDKVIDNEHQLESKCSGFDVWNNQDLGVVTDKLVSDVQSHGCALFILTCS
B8LQR2______________CGAVRAEQYLASTPPRGWNSYDSFSWIISEDEYMDNAQIMADELLRFGYQYAVVDFLWYRKRERGASVSSPGHDLIDEWGRPVPDPARWPSTAGGRGFKPIADSVHQMGLKFGIHVMRGISTQAVRANTPILGPLGLPYEENGRSFRAKDIALTSDKCGWMPACFMSVNTNMGAGRAFLRSLYSQYADWGVDFVKHDCIFGDDLNVNEITTVSEILKELGRPILYSLSPGTHATPNMASKINGLVNMYRVTADDWDSWRDVKSHFDVSRDFAASGLIGAQGLLGHSWPDLDMLPLGWLTDPGVNQGPHRSCALTVEEQKSQMTLWAMAKSPLMFGGDLRNIDDVTMSLITHPTLLAINANGTNNKEFSGISFIRGSTHTQVKASQGSFESVSEQLLKLSNCQRKNTKNWAIETKNGNMKKVSWNDGLAMTSEPRMCLHWRVQPNASLDWNIIRYGGKNLRRKDKESNGEQSYVLASLTEEVCLGSSPNKAFTFGQVKSNYFAPCNYHESQDWELTPDGALFNGYSGLCARVSKVEAMNEVDEARAWIANGSTGEIYIAFFNLGPNRLTISTVLKDVLNMSHIRDKMGRDKGIDNEHQLESKCSAFDVWNNKDLGIVTDKLVSDVQSHGCALFILTCT

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
844		27		72	1.0
889		18		81	0.999994
945		14		85	0.993533
946	10		90		0.90298
947		90		10	0.90298
948		90		10	0.90298
1027	11	88			0.923564
1030			88	11	0.923564
1073	11	88			0.923564
1076	88		11		0.923564
1077	88		11		0.923564
1082	88	11			0.923564
1084		88		11	0.923564
1085			88	11	0.923564
1201		90		10	0.90298
1202	90		10		0.90298
1239		10	90		0.90298
1241			90	10	0.90298
1242	90			10	0.90298
1359		83		16	0.994512
1365	11	88			0.923564
1561	16		83		0.994512
1562		16		83	0.994512
1563	16			83	0.994512
1670	85			14	0.993533
1741		83		16	0.994512
1752		83		16	0.994512
1857	85	14			0.993533
1910		11		88	0.923564
2086		90		10	0.999898
2221	11		88		0.923564
2234	12		87		0.992554
2235		12		87	0.992554
2237	87			12	0.992554
2254			83	16	0.994512
2255		83		16	0.994512
2337	83	16			0.994512
2373		20	80		0.995493
2478		11	88		0.923564
2492		14		85	0.993533
2504	60	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain