SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5583

Length: 1296 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5583

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lipoyl synthase [Arabidopsis thaliana] sp\|Q8LEE8.2\|LISC_ARATH RecName: Full=Lipoyl synthase, chloroplastic; AltName: Full=Lipoate synthase; Short=LS; Short=Lip-syn; AltName: Full=Lipoate synthase, plastidial; Short=LIP1p; AltName: Full=Lipoic acid synthas	-	-	0.0	82%
FL-Next	sp=Lipoyl synthase, mitochondrial; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Lipoic acid synthetase	-	-	7.87e-20	-

Source	Gene names
Sma3	At2g20860; B1143G03.28; B1155G07.1; CHLREDRAFT_194766; CHLREDRAFT_196092; F8L15_140; GSVIVT00002605001; GSVIVT00003955001; H0523F07.4; LAS; LIP1; LIP1p; LIPA1; LIPA2; MICPUCDRAFT_20781; MICPUCDRAFT_4033; MICPUN_60627; MICPUN_86513; OJ1005_B11.11; OSJNBa00

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	ferredoxin-NAD(P) reductase activity	GO:0008937	Molecular Function	-
Sma3	lipoate synthase activity	GO:0016992	Molecular Function	-
Sma3		GO:0017140	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	glycine catabolic process	GO:0006546	Biological Process	-
Sma3	lipoate biosynthetic process	GO:0009107	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoate synthase	IPR003698	-	-
Sma3	Ferredoxin thioredoxin reductase, alpha chain	IPR004207	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Uncharacterised protein family UPF0250	IPR007454	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08415.1	Radical SAM superfamily protein chr5:2710983-2713101 REVERSE LENGTH=394	82%
RefSeq	Arabidopsis thaliana	NP_568196.1	lipoyl synthase [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002319912.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNH7

Fln msg: your sequence is shorter than subject: 257 - 386

Fln protein: KREGDGIGTATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVGYIVLTSVDRDDIPDGGSGHFARTVSTLKELKPEILVECLTSDFRGDLDAVATVVKSGLDVFAHNIETVKRLQRIVRDPRAGYDQSLLVLKHAKAFKGGMVTKSSIMLGLGESDEEIKQTMHDLRAVGVDILTLGQYLQPTPLHLTVKEYVTPEKFTFWKEYGESIGFRYVASGPLVRSSYRAGEFFIESMLREQKAVESAS*

Protein Length: 258

Fln nts: CAAGAGAGAGGGAGATGGAATTGGGACAGCCACAATTATGCTTCTTGGGGACACATGTACTCGAGGTTGCAGATTCTGTGCTGTGAAAACTAGCAGGAATCCTGCTCCACCAGATCCAATGGAACCGGAGAATACGGCAAAAGCAATAGCTAGCTGGGGTGTTGGGTACATTGTTCTCACAAGTGTAGATCGAGATGACATACCAGATGGTGGCAGTGGGCATTTTGCTCGCACTGTGAGCACTCTGAAGGAACTCAAGCCGGAGATTCTTGTTGAATGTTTAACTTCTGATTTCAGAGGTGATCTAGATGCAGTTGCCACTGTTGTAAAATCTGGGCTAGATGTATTTGCTCACAACATCGAGACAGTGAAACGACTTCAACGGATAGTAAGAGATCCAAGGGCAGGGTATGACCAGAGCTTGCTTGTATTGAAGCATGCCAAGGCATTCAAGGGAGGAATGGTGACAAAATCTTCCATAATGCTGGGTCTTGGAGAATCTGATGAAGAGATAAAGCAAACAATGCATGACCTGCGTGCTGTGGGTGTTGATATCCTTACGCTGGGACAGTATTTGCAGCCTACACCTTTACATTTGACAGTAAAAGAGTATGTCACTCCTGAAAAGTTTACCTTTTGGAAGGAATATGGTGAATCTATTGGATTCCGATATGTTGCAAGCGGTCCTTTGGTTCGATCATCTTACAGAGCTGGAGAGTTTTTCATTGAAAGCATGCTTAGGGAGCAGAAGGCTGTGGAATCTGCTTCTTAG___TTCCTAGGTGGTAACATCTGGCAATATTTTGGCTGTTAGAAACAATATTTGCTGTTATTGTTATTGTAGGGGGCAGTCTGCTTCTTTGGAAACATCAGGCAATATTTTGCTCACGAGAAGCAAGTACTTATTGTTATTTTCATTTTAGAGGTCAGATGGATTATAATAGAATTCTGATACAATATATAAATCACGCAAGGTTGCAAAATGCTGAGCTGATACATTTACAGATGGATTCTATTCTTTTGCCCTGCAGCAATGCATGGCTAACATAAAATGATCAGATTATTTAAGGGGATTTACCGTTGGCCTCTTGTAGTTGGTGCTAGCATCGGATCTTCTAACTTGGTTTCCATATACACGTGTGGCAGAAGGTGAGATATTCTTGACGATGGGGATTATATAACTTTTGAAGTCTCTGGAAACATTCAATCCTGTTAAGATTGATACTTTCAGTATAGTTGAAAATCAGTACAATGAATTTCAATTTATCAAATTTAGATTTGGTCAAAGATTATTTGACT

Fln Alignment:

Contig5583___GIGTATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTAKAIASWGVGYIVLTSVDRDDIPDGGSGHFARTVSTLKELKPEILVECLTSDFRGDLDAVATVVKSGLDVFAHNIETVKRLQRIVRDPRAGYDQSLLVLKHAKAFKG-GMVTKSSIMLGLGESDEEIKQTMHDLRAVGVDILTLGQYLQPTPLHLTVKEYVTPEKFTFWKEYGESIGFRYVASGPLVRSSYRAGEFFIESMLREQKAVESAS
A9NNH7______________GTATATIMILGDTCTRGCRFCAVKTSRTPPPPDPNEPTNVAEAIVSWGLDYVVLTSVDRDDLPDQGSGHFAKTVQKLKQLKPKMLVEALVPDFQGNSECVQKVATSGLDVFAHNIETVEELQRVVRDHRANFNQSLEVLKMAKTYSPLGVLTKTSVMLGCGETPAQVIETMEKVREAGVDVITFGQYMRPTKRHMAVSEYVTPEAFEKYQKLGMEMGFRYVASGPMVRSSYKAGEFYIKSMIEDDRKKASSS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
760		20		80	0.995493
1164	20			80	0.995493
1165		20		80	0.995493
1166	20	80			0.995493
1261			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain