SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5579

Length: 3443 nt

UniGene Fasta

>sp_v3.0_unigene5579
CGTCGTGACCTTGGCTGTCACTCAACCCTGCGAGGCCTTTGCTGCAACACTGGGTGGAATTATGCCGTCTTTTGGAAGCTGAAACATCGGAGCCGCATGATGCTGACATGGGAAGATGGTTACTGTGAATCTGGAAATAGTTCAGCTCTCACAAATGTTTCTGCTCATATGGTACCCAGTTTGCCTCTCAATACCACCGGAAGTGGATGTGAGGGGGCCTCTGGTCAAGACAAGTGGTCTATTGGGGATCAAATCGACCCAGCTGTGGCGAAGATGTCTTATCAGGTGTTTTCACTTGGAGAAGGCATTATTGGACATGTGGCATTTACTGGTAAGCATCAATGGGTCTTTGGAGAGAGGAACTGCACTAATGAAGCACATTCTACAGTGTCAGTTTATGAAAATAAAAATCTTGAGTATCCCATAGGATGGCAGAACCAATTTTCTGCGGGAATCAAGACGATTGCTGTTGTTGCTGTAATGCCACATGGTGTTGTGCAGCTTGGCTCCAAACAAATTATCATGGAGAATTTGGAGTTTGTACACCGTGTAAAAAAATTGTTTGGTACACTTCAAAATGTTCCAGGAGCATTTCTCCCTGATGGTATCCAGGATGCTGTGAGTGGGAAGATTCAAGCGCCTGTTTTTTCAATGATGCCTGTCTCACTAAGTTCATCTGGAAATCCAGCCTCATCAGGTGTGATAAAGGAAACTTCCTTCCAAAAACAATCTAATCAGGTCACCACAAAATTCCCAAACTTGGGTGTTCTAGATCGATTTGTAAGTCCTGTAGATCTAGTGGAGAAGAACACGAGCTTGCCTTCTCAGACCCTGCCTTCACCTTCTACAGGAAATTTTGACTCTTCAGTTGAGATGAAGAACAGGGTGTATCTAAACAACATTTTAACTCGTAAAATGGGTGATAAAAGAATTTTGCAGTCAGCTTCCAAGGATGCGTACCCTTTTAGAGGGCACTTGCAAACAAACATGTCTTTGCCAGTTGCAAGCAAACATGATAATCAGCAGCCATTATTCAATGGTTCAGGGAAGACATTGATGGAGCAACTGCAGTTTCAAGGGAACATGGCATCAGATTACCAAGAAGAGTGTATCTTGAACCCTTTACTTGGAAGTGATGAAGGTTCTAATGTTGGAAATTTGTGCCAGGACAGTTTCATGGTATCAGTTGGGGCTGATGGGCTCCTGGAATCTGCCCTGTTCAATTCAGGCAAATCACAGTTGACAGACTTGAAACAAATAGATGTGCAACACCCCTTTCCAATATTTCAAGGTTGTGCTGGTCATTCTGGATACTGTCCATCACCTTCAAGGTTAGGAACATGCAATGTCAAGAAAACAGAAATGGAGACAATCCCCATGCATGTGCCTGTGACGGATGCTTCTTATAATGTTTTGTCATGTTCTGCAAATATCAAAACATCTGCCTGTGATCCTAGAGTGTCCTCTGATGCATCATGGAGTCATACAGCTGGTCATATAGAAACAAAACCGCTACAGGGTTTAGGTAAAAGTTTTATTCCTTCTCTTGGGGATGATGTGCTTTCAACATCTAACACACCTGGAATAAATCACCGATCCATGATTGGAATAAATTACCAACCTTGGCATAAAGAGTTCTTATCAGATTTGCCTGGGCTAATTCAGACTAACAGTGCTCATAGGTTGAACACTGACAAAGAATGTTCAGAAAGTTTCCTGCCTGGCATTGGCAAGATTTCTGCTATTCCTGCAGATAGTGATAAGCCTGGTGGTAATGGCGAGTCTGATAACTGCAGCAATTGGCCCTCTAAAGAACAAGATGACAACGCACATGCATTTGTGCATGTACCGTCAGGTGCTGAATTACTTGAAGCATTAGGGCCGCCTTTCAAAAAAAGAAGAACATACAAGGGTATGTGGAATGATATGTTATATCATGGACAAGATGTATGCAGTTCAAATTTGGGAACAGAAAATGTTGGAATCTCTCATAGGTCAGATTACCATTCTGAGTTGGATATGTCTCAGAGTTCAGATGTATCTGTAGTTAATGCACCTGAAGGGTGGTTTTTTCCTGATTCCAAATCTGAAGATCTTTTAGATGCTATTGTTGCTAATGTTTGCCCAGCGCCTAACCGAGGCACAGTTGACAATATATCCTCTAGAACTATATGTTCAAAAATAACAAACTCAAACTCTCTTCATTGTGCCTCAGTTATGACGGACTCTATCTCAGGAGGACAGTTAAGTGCCTGTGACCAAAAAGAGTGCAAGGTTTTGAACATTTCCCAGCCTAGAACATATGCAGATTTCGAAAATGATCAGAACTCAAATTTTTCTTCAGAAGTACATGATGATGTAAGTCTGAAAAGATCTTCAAATGAATCTTCTACAAGTGCACAGCTCAAATCAATGGTTACTGAGGTTCGGTGTCAGAACCGAGGACTTCCACAAAGGAAAAAGCTTGAAGAACCTATCAAAGTAAATAGGAAAAGGTCTAGGCCTGGTGAAAGTTCTAGGCCAAGGCCCAAAGATCGGCAGCAGATACAAGATCGTGTAAAAGAACTACGTGACATTGTCCCAAATGGAGCCAAGTGCAGTATTGATGCTTTACTTGAACGCACCATCAAGCACATGGTTTTCTTACAGAGTGTGTCCAAGTATGCTGATAAGCTAAAACAAAGTGGCGAATCAAAGGTGCTTGATAAGGAAGGTGGTATGCTTGCAACAAATAGCGTGGAAGAGGGTGCTACCTGGGCATTTGAACTGGGTGGTTCGACAGTACCGTGTCCTCTTATTGTGGAGAATTTGAATCAGCCCCATCAGATGCTTGTAGAGATGTTGTGTGAAGAACGGGGGCTATTTCTTGAAATAGCTGACATCATCCGAGGCTTGGGGCTCACAATCTTAAAGGGTATTATGGAGGTTCGTAATGACAAGATCTGGGCACACTTTATTGTGGAGGCAAGCAGGGATGTACACAGGGTTGATATTTTATGGTCACTTATGCAGTTGTTACAACCAAACACTAAGAGTACTACAAATACAATTAATCAGTCTTTCTTAGTCAGGACTCAGGGCATAGACAATGTTTCTCAGACATATGATGCATTCCAGCTATCCCCAATGTCTACTTTATTGACAAATGGTGCTGTGAGCGGGTCTTAAAATCTTTGCCTGCCATGACTGGCATCAATGCATTATTACTGACTCTATAGTGTAATGTAAGTAATATATGTTGTTAAAAGCTGCTAATACCCTGCATTATAGCAGATAACCTTAAGTGCAGAAAATGATTTATTCTTCTTACAAATGGGAAGAGTAAGGAATGGAGCTAACTTTAATGATTGATCTGTTACTCTTCTGACTGCAACTTGTTTAAAAACCTTAGACTTTGACATGCGTTCTCTGGCAGGGATTATTTCAAATGTTTGGTGTGGTTA

Ace file of the UniGene sp_v3.0_unigene5579

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	Gene names
Sma3	AT2G27230; At2g27230; At2g31280; At2g31280/F16D14.12; GSVIVT00000548001; GSVIVT00007504001; GSVIVT00017515001; LOC_Os11g06010; LOC_Os12g06330; Os02g0673500; Os07g0101300; Os11g0158500; Os12g0160400; OsI_08440; OsI_37555; OsJ_07902; OsJ_33044; OsJ_35303; P

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	maintenance of root meristem identity	GO:0010078	Biological Process	-
Sma3	stele development	GO:0010479	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3		IPR001092	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW1

Fln msg: atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is longer than subject: 1056 - 504

Fln protein: RRDLGCHSTLRGLCCNTGWNYAVFWKLKHRSRMMLTWEDGYCESGNSSALTNVSAHMVPSLPLNTTGSGCEGASGQDKWSIGDQIDPAVAKMSYQVFSLGEGIIGHVAFTGKHQWVFGERNCTNEAHSTVSVYENKNLEYPIGWQNQFSAGIKTIAVVAVMPHGVVQLGSKQIIMENLEFVHRVKKLFGTLQNVPGAFLPDGIQDAVSGKIQAPVFSMMPVSLSSSGNPASSGVIKETSFQKQSNQVTTKFPNLGVLDRFVSPVDLVEKNTSLPSQTLPSPSTGNFDSSVEMKNRVYLNNILTRKMGDKRILQSASKDAYPFRGHLQTNMSLPVASKHDNQQPLFNGSGKTLMEQLQFQGNMASDYQEECILNPLLGSDEGSNVGNLCQDSFMVSVGADGLLESALFNSGKSQLTDLKQIDVQHPFPIFQGCAGHSGYCPSPSRLGTCNVKKTEMETIPMHVPVTDASYNVLSCSANIKTSACDPRVSSDASWSHTAGHIETKPLQGLGKSFIPSLGDDVLSTSNTPGINHRSMIGINYQPWHKEFLSDLPGLIQTNSAHRLNTDKECSESFLPGIGKISAIPADSDKPGGNGESDNCSNWPSKEQDDNAHAFVHVPSGAELLEALGPPFKKRRTYKGMWNDMLYHGQDVCSSNLGTENVGISHRSDYHSELDMSQSSDVSVVNAPEGWFFPDSKSEDLLDAIVANVCPAPNRGTVDNISSRTICSKITNSNSLHCASVMTDSISGGQLSACDQKECKVLNISQPRTYADFENDQNSNFSSEVHDDVSLKRSSNESSTSAQLKSMVTEVRCQNRGLPQRKKLEEPIKVNRKRSRPGESSRPRPKDRQQIQDRVKELRDIVPNGAKCSIDALLERTIKHMVFLQSVSKYADKLKQSGESKVLDKEGGMLATNSVEEGATWAFELGGSTVPCPLIVENLNQPHQMLVEMLCEERGLFLEIADIIRGLGLTILKGIMEVRNDKIWAHFIVEASRDVHRVDILWSLMQLLQPNTKSTTNTINQSFLVRTQGIDNVSQTYDAFQLSPMSTLLTNGAVSGS*

Protein Length: 1057

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCCTGCGAGGCCTTTGCTGCAACACTGGGTGGAATTATGCCGTCTTTTGGAAGCTGAAACATCGGAGCCGCATGATGCTGACATGGGAAGATGGTTACTGTGAATCTGGAAATAGTTCAGCTCTCACAAATGTTTCTGCTCATATGGTACCCAGTTTGCCTCTCAATACCACCGGAAGTGGATGTGAGGGGGCCTCTGGTCAAGACAAGTGGTCTATTGGGGATCAAATCGACCCAGCTGTGGCGAAGATGTCTTATCAGGTGTTTTCACTTGGAGAAGGCATTATTGGACATGTGGCATTTACTGGTAAGCATCAATGGGTCTTTGGAGAGAGGAACTGCACTAATGAAGCACATTCTACAGTGTCAGTTTATGAAAATAAAAATCTTGAGTATCCCATAGGATGGCAGAACCAATTTTCTGCGGGAATCAAGACGATTGCTGTTGTTGCTGTAATGCCACATGGTGTTGTGCAGCTTGGCTCCAAACAAATTATCATGGAGAATTTGGAGTTTGTACACCGTGTAAAAAAATTGTTTGGTACACTTCAAAATGTTCCAGGAGCATTTCTCCCTGATGGTATCCAGGATGCTGTGAGTGGGAAGATTCAAGCGCCTGTTTTTTCAATGATGCCTGTCTCACTAAGTTCATCTGGAAATCCAGCCTCATCAGGTGTGATAAAGGAAACTTCCTTCCAAAAACAATCTAATCAGGTCACCACAAAATTCCCAAACTTGGGTGTTCTAGATCGATTTGTAAGTCCTGTAGATCTAGTGGAGAAGAACACGAGCTTGCCTTCTCAGACCCTGCCTTCACCTTCTACAGGAAATTTTGACTCTTCAGTTGAGATGAAGAACAGGGTGTATCTAAACAACATTTTAACTCGTAAAATGGGTGATAAAAGAATTTTGCAGTCAGCTTCCAAGGATGCGTACCCTTTTAGAGGGCACTTGCAAACAAACATGTCTTTGCCAGTTGCAAGCAAACATGATAATCAGCAGCCATTATTCAATGGTTCAGGGAAGACATTGATGGAGCAACTGCAGTTTCAAGGGAACATGGCATCAGATTACCAAGAAGAGTGTATCTTGAACCCTTTACTTGGAAGTGATGAAGGTTCTAATGTTGGAAATTTGTGCCAGGACAGTTTCATGGTATCAGTTGGGGCTGATGGGCTCCTGGAATCTGCCCTGTTCAATTCAGGCAAATCACAGTTGACAGACTTGAAACAAATAGATGTGCAACACCCCTTTCCAATATTTCAAGGTTGTGCTGGTCATTCTGGATACTGTCCATCACCTTCAAGGTTAGGAACATGCAATGTCAAGAAAACAGAAATGGAGACAATCCCCATGCATGTGCCTGTGACGGATGCTTCTTATAATGTTTTGTCATGTTCTGCAAATATCAAAACATCTGCCTGTGATCCTAGAGTGTCCTCTGATGCATCATGGAGTCATACAGCTGGTCATATAGAAACAAAACCGCTACAGGGTTTAGGTAAAAGTTTTATTCCTTCTCTTGGGGATGATGTGCTTTCAACATCTAACACACCTGGAATAAATCACCGATCCATGATTGGAATAAATTACCAACCTTGGCATAAAGAGTTCTTATCAGATTTGCCTGGGCTAATTCAGACTAACAGTGCTCATAGGTTGAACACTGACAAAGAATGTTCAGAAAGTTTCCTGCCTGGCATTGGCAAGATTTCTGCTATTCCTGCAGATAGTGATAAGCCTGGTGGTAATGGCGAGTCTGATAACTGCAGCAATTGGCCCTCTAAAGAACAAGATGACAACGCACATGCATTTGTGCATGTACCGTCAGGTGCTGAATTACTTGAAGCATTAGGGCCGCCTTTCAAAAAAAGAAGAACATACAAGGGTATGTGGAATGATATGTTATATCATGGACAAGATGTATGCAGTTCAAATTTGGGAACAGAAAATGTTGGAATCTCTCATAGGTCAGATTACCATTCTGAGTTGGATATGTCTCAGAGTTCAGATGTATCTGTAGTTAATGCACCTGAAGGGTGGTTTTTTCCTGATTCCAAATCTGAAGATCTTTTAGATGCTATTGTTGCTAATGTTTGCCCAGCGCCTAACCGAGGCACAGTTGACAATATATCCTCTAGAACTATATGTTCAAAAATAACAAACTCAAACTCTCTTCATTGTGCCTCAGTTATGACGGACTCTATCTCAGGAGGACAGTTAAGTGCCTGTGACCAAAAAGAGTGCAAGGTTTTGAACATTTCCCAGCCTAGAACATATGCAGATTTCGAAAATGATCAGAACTCAAATTTTTCTTCAGAAGTACATGATGATGTAAGTCTGAAAAGATCTTCAAATGAATCTTCTACAAGTGCACAGCTCAAATCAATGGTTACTGAGGTTCGGTGTCAGAACCGAGGACTTCCACAAAGGAAAAAGCTTGAAGAACCTATCAAAGTAAATAGGAAAAGGTCTAGGCCTGGTGAAAGTTCTAGGCCAAGGCCCAAAGATCGGCAGCAGATACAAGATCGTGTAAAAGAACTACGTGACATTGTCCCAAATGGAGCCAAGTGCAGTATTGATGCTTTACTTGAACGCACCATCAAGCACATGGTTTTCTTACAGAGTGTGTCCAAGTATGCTGATAAGCTAAAACAAAGTGGCGAATCAAAGGTGCTTGATAAGGAAGGTGGTATGCTTGCAACAAATAGCGTGGAAGAGGGTGCTACCTGGGCATTTGAACTGGGTGGTTCGACAGTACCGTGTCCTCTTATTGTGGAGAATTTGAATCAGCCCCATCAGATGCTTGTAGAGATGTTGTGTGAAGAACGGGGGCTATTTCTTGAAATAGCTGACATCATCCGAGGCTTGGGGCTCACAATCTTAAAGGGTATTATGGAGGTTCGTAATGACAAGATCTGGGCACACTTTATTGTGGAGGCAAGCAGGGATGTACACAGGGTTGATATTTTATGGTCACTTATGCAGTTGTTACAACCAAACACTAAGAGTACTACAAATACAATTAATCAGTCTTTCTTAGTCAGGACTCAGGGCATAGACAATGTTTCTCAGACATATGATGCATTCCAGCTATCCCCAATGTCTACTTTATTGACAAATGGTGCTGTGAGCGGGTCTTAA___AATCTTTGCCTGCCATGACTGGCATCAATGCATTATTACTGACTCTATAGTGTAATGTAAGTAATATATGTTGTTAAAAGCTGCTAATACCCTGCATTATAGCAGATAACCTTAAGTGCAGAAAATGATTTATTCTTCTTACAAATGGGAAGAGTAAGGAATGGAGCTAACTTTAATGATTGATCTGTTACTCTTCTGACTGCAACTTGTTTAAAAACCTTAGACTTTGACATGCGTTCTCTGGCAGGGATTATTTCAAATGTTTGGTGTGGTTA

Fln Alignment:

Contig5579___LGCHSTLRGLCCNTGWNYAVFWKLKHRSR-----------------MMLTWEDGYCESGNSSALTNVSAHMVPSLPLNTTGSGCEG----ASGQDKWSIGDQIDPA---VAKMSYQVFSLGEGIIGHVAFTGKHQWVFGERNCTNEAHSTVSVYENKNLE-YPIGWQNQFSAGIKTIAVVAVMPHGVVQLGSKQIIMENLEFVHRVKKLFGTLQNVPGAFLPDGIQDAVSG
B8LQW1______________MALHEALRNVCVNSEWTYSVFWTIRPRPRSRGGSGNGCKVGEENGSLMLMWEDGYCRS---------SKPRVNRVPGPFNGNGCMDKLVKSSSFDCLEELDADDPVRKTFRKMSIQLYNYGEGLMGKVASDKCHKWVFKE---PTECETGISNYWQSSFDAHPPEWTDQFASGIQTIAVIQA-GHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFAGARNG

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
326		16		83	0.994512
412		80	20		0.995493
421	20	80			0.995493
423	20	80			0.995493
424	80			20	0.995493
462	75		25		0.996473
512	50	50			1.0
597	25	75			0.996473
599	25	75			0.996473
601			75	25	0.996473
609		75	25		0.996473
610		75	25		0.996473
611	75		25		0.996473
661	40		60		1.0
726	83	16			0.994512
727	16	83			0.994512
804		20	80		0.995493
806	80			20	0.995493
807			80	20	0.995493
849	33		66		0.997452
969	66		33		0.997452
1212		85	14		0.993533
1215	14	85			0.993533
1216	14	85			0.993533
1217		85	14		0.993533
1235		25		75	1.0
1236		87	12		0.992554
1237	87		12		0.992554
1238		87	12		0.992554
1307		14		85	0.993533
1333		16	83		0.994512
1400	25		75		0.996473
1519			80	20	0.995493
1522			25	75	0.996473
2302	75	25			0.996473
2345	50			50	1.0
2355	25		75		0.996473
2700	10		90		0.90298
2703		90		10	0.90298
2707	90			10	0.90298
2708			10	90	0.90298
2712	10		90		0.90298
2714	90	10			0.90298
2717			10	90	0.90298
2811			16	83	0.994512
2812			16	83	0.994512
2881	88			11	0.923564
2883	88		11		0.923564
2885		88	11		0.923564
2888	11	88			0.923564
2890	11		77	11	0.968132
2891	77			22	0.999999
2892			88	11	0.923564
2898			87	12	0.992554
2899		12	87		0.992554
2900	12		87		0.992554
3329			58	41	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain