SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5575

Length: 1757 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5575

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RABA2a [Arabidopsis thaliana] sp\|O04486.1\|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gb\|AAB60720.1\| Strong similarity to A. thaliana	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015595	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09630.1	ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, RAB11c RAB GTPase 11C chr1:3118350-3119571 REVERSE LENGTH=217	57%
RefSeq	Arabidopsis thaliana	NP_172434.1	Ras-related protein RABA2a [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002331128.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM0

Fln msg:

Fln protein: MERRCNEEYDYLFKVMFTGDSSVGKSNIISRLTRNYFSHQCKPTVGVEFAIYTIQDKGKTIAAQIWDTCGLERYASFTKSCYRGVAGAVLVYDITRRRTFENVGKWLKELRDHANSNPVIMLIGNKSDLQHLRSVSTEDAQKFAEKEGLLFMETSAFKATNVDKALQIILQEIYRVFSEKEVHSEDSKGVSTQDGKATFGAKTRMTTQRTGCCL*

Protein Length: 216

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGGCGGGTCAGGTAGGTGGTGATGAGTACATTGCATCATTACTGTTGGGGAGACCTAGCGTTTGTGTTTTAGGTATTAGGGAGCTGGGTAGGCAAGGAGGGAAGGAGAGAGGGGCAATGGCGAATGGAACAGCAAGGTGGCTCTCCAGCTTCCCGTTGATTGCGAGGACAAATGGCAGAACAATGGCCGCCTCATCACTCCTCCACCACCTCATTCCCCTTATTATTCGCTCATCATAAGAAGCAGCAGCAGCACAATAACTATGATTTCACCACTTTTGGGATAGAGGACGATTGCGATGCGAATCCGAATCCCCAATTTGCAGGCTGGTTAGTAGTGTATCAGACAGGAGCAGCAGAGTGGTGGTGCGCAGTAGGGAATACGAATATTAATAATAATACTGCTTCGCTTTTAA_-_ATGGAACGCAGATGCAATGAAGAGTATGATTATTTATTCAAAGTGATGTTCACAGGGGACTCCAGCGTGGGTAAGTCCAACATCATCTCCAGATTGACTCGCAACTATTTCTCCCATCAGTGTAAGCCCACTGTTGGCGTTGAATTCGCGATTTACACCATCCAGGACAAAGGGAAGACCATAGCAGCCCAGATATGGGATACTTGTGGTTTGGAGCGATATGCTTCATTCACGAAATCCTGTTATCGTGGGGTTGCTGGGGCTGTGCTAGTTTATGATATCACCAGGCGTCGAACCTTTGAAAATGTGGGCAAATGGCTGAAGGAACTCAGGGACCATGCTAATTCCAACCCAGTAATTATGCTAATAGGAAACAAATCTGATTTACAACATTTACGCAGTGTATCAACAGAAGATGCTCAGAAGTTTGCTGAGAAGGAAGGTCTACTGTTTATGGAGACATCAGCATTTAAAGCTACAAATGTTGATAAGGCATTGCAAATAATTCTGCAAGAAATATATCGAGTATTCAGTGAGAAGGAAGTTCATTCTGAGGATTCAAAAGGTGTGAGCACTCAAGATGGAAAAGCTACTTTTGGTGCAAAGACTAGGATGACTACACAGAGGACGGGTTGTTGTCTGTAG___CACTAACTGTGGTACATAAAAAATTAGCCTAAGCAAGAAAGGATTTGCCTCATATCCATCAAAAGGAGCTGGTAGTAAACAGGAGAGTTACTCATTGCAAAGGCAGGCGTGGATATCTTGAAGGGTGGTTGTTTATAGCAGACACTGTATGGGTAAATTCAATGAGGTTCTTTTGAGGCAAGTGGCTGGCATATTTTGCCCATTCTTATCGAAGTTAGCTAGTTCTCGGTGAGGCCTTTGCTATGGCATGAGTATTTTATGGCTACTTGGTTTGCTGTTACGGAGCATAGTTTAGACCTGGGGAACACCATTGCATATGTTATGTCGAGTGGCTGCCAAGCAGATTCTTGTTAGTGTATCATCATGATTATCAACAGGACCTCAATGATACAGATAATGCTTACAATCCTTTTTGATTTTTATGAACTCCAAATGCTAGATTGTGTGGTGGATCACCTTGTAAAGGAACATAATAGTATAGCCTCTGTTAAAGCAGGTTTTTATTGCAAGACATTTTGTCAATTAACCTCTGCTTGAAAGAACAATTAGCTGTGGGGACCTCTTCCACTTTGAAAAGAGGTTGGCAACAAAGACAGTCCTATCCTAGTATCCACTCTGAAAATAGGTTATATGGTCCTGGTCAAGTTTCATTTATCAGAAACATCATTCAC

Fln Alignment:

Contig5575___MERRCNEEYDYLFKVMFTGDSSVGKSNIISRLTRNYFSHQCKPTVGVEFAIYTIQDKGKTIAAQIWDTCGLERYASFTKSCYRGVAGAVLVYDITRRRTFENVGKWLKELRDHANSNPVIMLIGNKSDLQHLRSVSTEDAQKFAEKEGLLFMETSAFKATNVDKALQIILQEIYRVFSEKEVHSEDSKGVSTQDGKATFGAKTRMTTQRTGCCL
B8LNM0______________MGRRCNEDYDYLFKVMFTGDSSVGKSNIISRLTRNYFSHQCKPTVGVEFGIYTIQDKGKTIAAQIWDTCGLERYASFTKSCYRGVAGAVLVYDITRRRTFENVGKWLKELRDHANSNPVIMLIGNKSDLQHLRSVSTEDAQKFAEKEGLLFMETSAFKSTNVDKALQIILQEIHRVFSEKELHSEESNGVSTQDGKPTFGAKTRTNTQRTGCCL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
658		85	14		0.993533
778	14	85			0.993533
807	57		42		1.0
814	85	14			0.993533
816		83		16	0.994512
817	83			16	0.994512
821		83	16		0.994512
891		42	57		1.0
961		87		12	0.992554
967			87	12	0.992554
998	85		14		0.993533
1058	16	83			0.994512
1071	16		83		0.994512
1139			20	80	0.995493
1296	25	70	4		1.0
1469		84	15		0.999986
1636		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
268	280	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain