SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5544

Length: 2066 nt

UniGene Fasta

>sp_v3.0_unigene5544
ATGACCAACATACCTGGTTATTCTGCTGCTCACCTGCAGCCACTCCCCAACTCATTTTTTCCTGCAGAAATTCCCCATATCCATGGCTCTTCAGAGCGTGAAAGCCCTGGCTTTGCTTCTGCTGTTATTCTCATTACACAAATCCGCAAGTAGTTCTGCATTATATGCAAGTTCCAGATGGATAGTGGATGAAAATGGCTGCAGAGTAAAGCTTGCCTGTGTTAATTGGGCTTCACATGTCGACATAATGGTGGCAGAAGGCCTGGACAAAAAGCCAGTCGACGACATAACAGCAAATATCCGAGCAATGGGTTTCAACTGTGTTCGCTTGACTTGGTCCCTCTTCATGTTCACAGATTCTTCCCTTGGAGCCATGACAATGAAGAAATCCTTGAGAAAACTGAACCTCTCGGATGCCGAGGTAGGGGTTGCTACAAATAACCCGGATCTTCTTGATTTGCCTGTCATTGAAGTATATAAAAGAGTTGTTTCGAGCTTAGGCGCCAGTGGGGTTATGGCTATCCTCGATAATCATATCAGCAGGCCAGGCTGGTGCTGCAGCAATTCAGATGGCAATGGGTTCTTTGGAGATAGGGATTTTAATCCAGATACCTGGATCAAAGGCCTAATTTCAGTAGCTACAATGTTTAATGGAACTGACCATGTTGTGGGGATGAGCCTGAGAAACGAATTGAGAGGTCCAAAGCAAAACCAGAACGATTGGTACACATTCATGCAGAAAGGGGCCGAGGCAGTACACAGAACAAACCCTAAAGTGCTCGTTATACTCTCAGGCTTAAGCTTCGATACGAATCTCGTGTTCTTATCTCAGAAACCAGTGAACTTGACCTTCAAGGAAAAAATAGTATTTGAAATGCACTGGTACGCGTTCTCAGATGGCCGGGCCTGGGCCAATGGAAACCCTAACCAGGTCTGTGGCTCCGTGACCTCGAGCATAATGAGTAGGGGTGGTTTTCTCATCACCCCCAACAAGACCTACACTGCTCCTCTGTTTTTTAGTGAATTTGGAATAGATCAGAGGGGCACCAATGTCAATGATAATAGGTATATAAATTGTTTTCTGGCCTTTGCTGCTGAGAATGATCTGGACTGGGCTTATTGGGCCCTGCAGGGCAGTTATTATATCAGATCAGGAATACCGGCGCTTGATGAGACATATGGAATCCTGAATGGGGACTGGAGTCAGCCTAGAAACTCAAGCTTTCTGGCCAGATTGAGCTTTATACAACAGCCATTTCTAGGTCCAGGTTTGTCTCAGAGTTCACCTTATCAATTGATATACCATCCCTCTACAGGACTGTGCCTCCAGAGGTGTTCATTATTTGGGTTAGACATTACACTTGGCCCCTGTACAGAAGCTGAGTCATGGAATTATAGTCCCCAAGGCAACATCTTTCTCAAAGGAACTATTTTCTGCGTGGAAGCTGTTGGACTAGGAAAGGCAGCAAGGCTGGGTATGTTCTGTATGGGTGACAATACCCAATGGAGCATGATGTCAGATTCTCAATTGCATTTATCTGCGAAGGTAGAAGACGGAACTACAGTATGTCTGGATGGTGCATCTATGCCATCTGTTGTAACTAACAAATGCAATTGTTTGAGCGGAGATTCTAGTTGTGATCCAGCAAGTCAGTGGTTCAAGATCATCACCACAACCAGATCATCGTCACTTGTGTCAGATATATAATAATATCAACGACAGTAGTGCCGATACTATAGAATAACACAACCCTCAATATTGAAGGAAATAACTGTAAAATAACACAACACAAACCTAAATGTTTTCTTTTGATCGAGATTCCCTGAAAGGATGACATCATGGCCTCCCCAAAATCCATCCTCAAATGTAAATGCCCAAAAAACAATCAGAGGGAGGTATCAATCTTCAAAAGAATGGACTTCATGAAATGCTATTGGACCTTCTGACTTCATACAGTGTAGGAACTCTGAAGGACATCCCTATCTCTATTGGAATATGTTGTACACTATATGAATTTGCAAAGACATTTTTATTTGGATTATGGATTTTAGATATTTAACTGGAC

Ace file of the UniGene sp_v3.0_unigene5544

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana] gb\|AAU05478.1\| At1g13130 [Arabidopsis thaliana] gb\|AEE28973.1\| Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Chromosome chr2 scaffold_132, whole genome shotgun sequence	-	-	4.873e-12	-

Source	Gene names
Sma3	At1g13130; At3g26140; At5g16700; At5g17500; F3F19.15; F5E19_40; GSVIVT00002518001; GSVIVT00002519001; GSVIVT00002521001; GSVIVT00002522001; GSVIVT00002523001; GSVIVT00007290001; GSVIVT00027656001; GSVIVT00027658001; GSVIVT00027661001; GSVIVT00027662001; G

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ricin B lectin domain	IPR000772	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Pentapeptide repeat	IPR001646	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein chr1:4474726-4477820 FORWARD LENGTH=552	51%
RefSeq	Arabidopsis thaliana	NP_172772.2	Cellulase (glycosyl hydrolase family 5) protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002312657.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPB4

Fln msg:

Fln protein: MALQSVKALALLLLLFSLHKSASSSALYASSRWIVDENGCRVKLACVNWASHVDIMVAEGLDKKPVDDITANIRAMGFNCVRLTWSLFMFTDSSLGAMTMKKSLRKLNLSDAEVGVATNNPDLLDLPVIEVYKRVVSSLGASGVMAILDNHISRPGWCCSNSDGNGFFGDRDFNPDTWIKGLISVATMFNGTDHVVGMSLRNELRGPKQNQNDWYTFMQKGAEAVHRTNPKVLVILSGLSFDTNLVFLSQKPVNLTFKEKIVFEMHWYAFSDGRAWANGNPNQVCGSVTSSIMSRGGFLITPNKTYTAPLFFSEFGIDQRGTNVNDNRYINCFLAFAAENDLDWAYWALQGSYYIRSGIPALDETYGILNGDWSQPRNSSFLARLSFIQQPFLGPGLSQSSPYQLIYHPSTGLCLQRCSLFGLDITLGPCTEAESWNYSPQGNIFLKGTIFCVEAVGLGKAARLGMFCMGDNTQWSMMSDSQLHLSAKVEDGTTVCLDGASMPSVVTNKCNCLSGDSSCDPASQWFKIITTTRSSSLVSDI*

Protein Length: 543

Fln nts: ATGACCAACATACCTGGTTATTCTGCTGCTCACCTGCAGCCACTCCCCAACTCATTTTTTCCTGCAGAAATTCCCCATATCC_-_ATGGCTCTTCAGAGCGTGAAAGCCCTGGCTTTGCTTCTGCTGTTATTCTCATTACACAAATCCGCAAGTAGTTCTGCATTATATGCAAGTTCCAGATGGATAGTGGATGAAAATGGCTGCAGAGTAAAGCTTGCCTGTGTTAATTGGGCTTCACATGTCGACATAATGGTGGCAGAAGGCCTGGACAAAAAGCCAGTCGACGACATAACAGCAAATATCCGAGCAATGGGTTTCAACTGTGTTCGCTTGACTTGGTCCCTCTTCATGTTCACAGATTCTTCCCTTGGAGCCATGACAATGAAGAAATCCTTGAGAAAACTGAACCTCTCGGATGCCGAGGTAGGGGTTGCTACAAATAACCCGGATCTTCTTGATTTGCCTGTCATTGAAGTATATAAAAGAGTTGTTTCGAGCTTAGGCGCCAGTGGGGTTATGGCTATCCTCGATAATCATATCAGCAGGCCAGGCTGGTGCTGCAGCAATTCAGATGGCAATGGGTTCTTTGGAGATAGGGATTTTAATCCAGATACCTGGATCAAAGGCCTAATTTCAGTAGCTACAATGTTTAATGGAACTGACCATGTTGTGGGGATGAGCCTGAGAAACGAATTGAGAGGTCCAAAGCAAAACCAGAACGATTGGTACACATTCATGCAGAAAGGGGCCGAGGCAGTACACAGAACAAACCCTAAAGTGCTCGTTATACTCTCAGGCTTAAGCTTCGATACGAATCTCGTGTTCTTATCTCAGAAACCAGTGAACTTGACCTTCAAGGAAAAAATAGTATTTGAAATGCACTGGTACGCGTTCTCAGATGGCCGGGCCTGGGCCAATGGAAACCCTAACCAGGTCTGTGGCTCCGTGACCTCGAGCATAATGAGTAGGGGTGGTTTTCTCATCACCCCCAACAAGACCTACACTGCTCCTCTGTTTTTTAGTGAATTTGGAATAGATCAGAGGGGCACCAATGTCAATGATAATAGGTATATAAATTGTTTTCTGGCCTTTGCTGCTGAGAATGATCTGGACTGGGCTTATTGGGCCCTGCAGGGCAGTTATTATATCAGATCAGGAATACCGGCGCTTGATGAGACATATGGAATCCTGAATGGGGACTGGAGTCAGCCTAGAAACTCAAGCTTTCTGGCCAGATTGAGCTTTATACAACAGCCATTTCTAGGTCCAGGTTTGTCTCAGAGTTCACCTTATCAATTGATATACCATCCCTCTACAGGACTGTGCCTCCAGAGGTGTTCATTATTTGGGTTAGACATTACACTTGGCCCCTGTACAGAAGCTGAGTCATGGAATTATAGTCCCCAAGGCAACATCTTTCTCAAAGGAACTATTTTCTGCGTGGAAGCTGTTGGACTAGGAAAGGCAGCAAGGCTGGGTATGTTCTGTATGGGTGACAATACCCAATGGAGCATGATGTCAGATTCTCAATTGCATTTATCTGCGAAGGTAGAAGACGGAACTACAGTATGTCTGGATGGTGCATCTATGCCATCTGTTGTAACTAACAAATGCAATTGTTTGAGCGGAGATTCTAGTTGTGATCCAGCAAGTCAGTGGTTCAAGATCATCACCACAACCAGATCATCGTCACTTGTGTCAGATATATAA___TAATATCAACGACAGTAGTGCCGATACTATAGAATAACACAACCCTCAATATTGAAGGAAATAACTGTAAAATAACACAACACAAACCTAAATGTTTTCTTTTGATCGAGATTCCCTGAAAGGATGACATCATGGCCTCCCCAAAATCCATCCTCAAATGTAAATGCCCAAAAAACAATCAGAGGGAGGTATCAATCTTCAAAAGAATGGACTTCATGAAATGCTATTGGACCTTCTGACTTCATACAGTGTAGGAACTCTGAAGGACATCCCTATCTCTATTGGAATATGTTGTACACTATATGAATTTGCAAAGACATTTTTATTTGGATTATGGATTTTAGATATTTAACTGGAC

Fln Alignment:

Contig5544___RWIVDENG-CRVKLACVNWASHVDIMVAEGLDKKPVDDITANIRAMGFNCVRLTWSLFMFTDSSLGAMTMKKSLRKLNLSDAEVGVATNNPDLLDLPVIEVYKRVVSSLGASGVMAILDNHISRPGWCCSNSDGNGFFGDRDFNPDTWIKGLISVATMFNGTDHVVGMSLRNELRGPKQNQNDWYTFMQKGAEAVHRTNPKVLVILSGLSFDTNLVFLSQKPVNLTFKEKIVFEMHWYAFSDGRAWANGNPNQVCGSVTSSIMSRGGFLITPNKTYTAPLFFSEFGIDQRGTNVNDNRYINCFLAFAAENDLDWAYWALQGSYYIRSGIPALDETYGILNGDWSQPRNSSFLARLSFIQQPFLGPGLSQSSPYQLIYHPSTGLCLQRCSLFGLDITLGPCTEAESWNY-SPQGNIFLKG-TIFCVEAVGLGKAARLGMFCMGDNTQWSMMSDSQLHLSAKVE-DGTT--VCLDGASMPSVVTNKCNCLSGDSSC----DPASQWFKIITTTRSSS
B8LPB4______________RWIVDETGGTRVKLACVNWVSHLQPMVTEGLSRQPLKYITSTIVSQGFNCVRLTWATFMVTNPANRNLTVQDSLNSLNLSDAAAAMAVSNPEFLDLTLMDSYKRVVAGLGEAGLMVILDNHISRPQWCCGYNDGNGFFGDADFDPGVWIQGLSAMATAFKGTAAVVGMSLRNELRGSRANAADWYKYMQQGAQAVHDANPDVLVIMSGLNYAADLKFLASKPVSLEFTNKIVYEMHWYSFTDGKAWENMPANKLCGTVTARVNDHTAF-VAKTLSPPAPLFISEFGIDERGSNVGDNRFINCFLAFAAEGDFDWALWTLQGSYYLRNGQPGFEETYGIFNGRWDDLRDPPFVSRLKSLQKPFQESFSSSEPLYKTLYHPATGLCLATSGEGGL--KLDSCDSPTLFEYKSPQGAFTLSDESSTCIAAKGPGLAAELSTQCAASNSKWQRVSSSNLQVSVTLSVNGTSQMLCLDGKSSPQVLTNDCICLK-DSDCRKDENPEMQWFKLITTNRKGS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
825		60		40	1.0
1248	87		12		0.992554
1341	90		10		0.90298
1470	87		12		0.992554
1695		11		88	0.999952
1698			88	11	0.999952
1751	88		11		0.923564
1753		75		25	1.0
1761	62		37		1.0
1942		75		25	0.996473
1986		25		75	0.996473
2021			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain