SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5528

Length: 2492 nt

UniGene Fasta

>sp_v3.0_unigene5528
ATGAGGGATGACATATATTCTCCCAAATACACAACCACTCGTATCAACGCAGAGGACGCGGTGGTTCGTAGTAATTTTGCATATTCCCCTCAGAAGCAGTGAAGATCGAACTATCTGGACAAAGTAGCCTTTGCAGTTGCTCTCCATTTAAGCTTGGCCGTACCTCAACAATCTTTTCTTCACTCAGATATCGACAATTCTGTAAATAGTTTGGCAGGATTCATTTGTACAGTTCTTGCAGGTTTTCTGGGGTTCCGGATTTCATTTACAGATACATTTGAAAACTTAGTGCCCATCAGTTTGGTTTTACTGGCCTCAATTTCTCCAGTGCGTTTTAGGGTGTGAATTGAAGCAGACCGAGGCTTGGAAAGCTTGGCATATATGCATCCGTCGCAGAGACCCCCTCAGAGTGGCGTTATGAGCCCTACAAGTGCCATGTCGGCGCCTATCATGAGGCCCGCTGTGGCCGTTATACCTCCTGCGACGCTTGTTTCTATGCCCAATGCGAGGCCCCATATTGGTATCTTTGGCTCAACTGCTGCTGCTGCTCCTGTGTCTGGGCCCATCATGACGGTGCCGCCTATCCCTGGAAATGTATTTTTGGATTCGCCCTCTGAGATTGATATTGCTAGAACACATGCTCTTGAAAAGTTCCAAATTGACGCAGAATTGATATTGACTGAAAAAGAAGAAGCAAAGAGGCGAAGCGTACTGGCTCAACTTGAACAGATTGTCAAACGCTGGGCGAGGAGAGTAACTCGGCAAAGAGGTCTCCCAAAAGATCTGAAAGAAAGCAGTAATGCAAAAATATTCACCTTTGGGTCTTATCAGTTAGGGGTCCATGGACCAGAAGCAGATATTGATGCTTTGTGTGTTGGACCATGTTATGCAACATTGGAGGACGACTTTTTTATTGTTTTGCACAACATGCTTAAGAACACACAAGAAGTTTCAGAGGTTCAATGTGTGAAGAGTGCAAATGTTCCCTTGATGCGGTTTAAATTCAGTGGGATTTCAATTGATCTCTTATATGCAAGGCTTTCTCTGAGAACAATTCCAGAAGATATGGATATTCTCGATGAAAAATTGCTTGAGAATATTGATGATACAACTGTCAAAAGTTTGAATGGATGCAGAGTTACCGCACGGATCCTTCAGCTAGTACCCAAGATTGAGAACTTCCGTTCCACCCTGAGATGCATCAAGTTTTGGGCAAAGAGGAGAGGAATATATTCACATACTTTCGGGTTTCTTGGAGGAATACACTGGGCTGTGCTTGTTGCACGTGTTTGCCAAATGTTTCCAAATGCCACCGTCAGTATGCTGGTTTCAAGATTTTTTTGGATATATGCACATTGGCAGTGGCCAACTCCAGTGACATTGGTGGAGACCCAGCCTGATTATTCTGATGGATCAGATAGACATCACCATATGCCAATTATCATACCAGTGTACCCCTATAGTTGCTGCAGTTACAATGTTACAAGAAGCACCCTACAAAAACTCAAGTCAGAATTTTCACGTGGCTGGGATGCAATAATGAAAATGGAGTTAAATTGGAGCACCTTGCCAAATAGTGGTGACTGGAATGTACTCTTTGAACGGTTTCCTTTCTGCTCTAGTTATGATTTTTTCATTCAAATCCATGTTACAGCTTCAGATGAAGATGATTTTCGGAGTTGGAGAGGGTGGGTTGAATCACGTTTCCGTCATCTTCTCTTGAAGTTTGAAAAGCTTCCAGCATACTGTGATCCAAATCCATACCCATATTTTGACAAGAATGTAAAGGAGCCACATTGTTATTTTTTATGGGGACTAAGACTGAAGAAAAACATTTGTATTGATATGACTGATTTGGAGGAGGAGTTCAGGTTTTACCTCAGCAATGGATATGAAGGCCGACCAGGATGTGATGTTTATCTGACCTTGCTCAATCGATTTCAATTACCATCTTTTGTGTATTTCAAATCATCGGAACTCAGACAACACTCTAAACCATACTGGACAAATGAAAGCTATAACTACTATCGTAGAATTCCTAGATACTCTCAACATTACCCAGTTTTTCTTGTTGGCTACGTCGCAGTTGATAATGAAGCCATAAATCATGTTGGGAATTAGAAGGGTTCTACTTCAGCTAGACTAGTAATTTCACGAGATGTGAAATTGAAGAAATTTTGGCCTGTATCTGGGAGTGCAAATTACACGCACAGAACTTCTATTTTGAAATCATTGTTGCAGTCTCAATTTGAAAATTCAAAACGAGCACAATATGCTGTTAAAGCTCGCTTACTTGTTTAAATGTAAAAACAAAATTGTTTTTGCAAATGATTAGATTGGCAAGCTCCATGCAAAACGATGATGATACGCTGAGTTCCTACATGCATCATGATAATGATATAACTATTTCTAGAATAGTCTAAATTTTGAAAAAGCCAACCCACTTTTTTCTGGACACTTTTATTTATATCATCAGGGCTAAATTAATTTGG

Ace file of the UniGene sp_v3.0_unigene5528

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Putative polynucleotide adenylyltransferase	-	-	5.176e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	4.335e-18	-

Source	Gene names
Sma3	AT4G32850; At1g17980; At2g25850; At3g06560; At4g32850; F2H15.20; F5E6.11; GSVIVT00013792001; GSVIVT00016654001; GSVIVT00017746001; GSVIVT00030424001; GSVIVT00033174001; GSVIVT00034292001; OJ1165_F02.115; OJ1353_F08.12; OSJNBa0090E14.29; Os01g0702900; Os02

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3		GO:0006350	Biological Process	-
Sma3	RNA polyadenylation	GO:0043631	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322074.1	predicted protein, partial [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A854

Fln msg:

Fln protein: MHPSQRPPQSGVMSPTSAMSAPIMRPAVAVIPPATLVSMPNARPHIGIFGSTAAAAPVSGPIMTVPPIPGNVFLDSPSEIDIARTHALEKFQIDAELILTEKEEAKRRSVLAQLEQIVKRWARRVTRQRGLPKDLKESSNAKIFTFGSYQLGVHGPEADIDALCVGPCYATLEDDFFIVLHNMLKNTQEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENIDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHTFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFWIYAHWQWPTPVTLVETQPDYSDGSDRHHHMPIIIPVYPYSCCSYNVTRSTLQKLKSEFSRGWDAIMKMELNWSTLPNSGDWNVLFERFPFCSSYDFFIQIHVTASDEDDFRSWRGWVESRFRHLLLKFEKLPAYCDPNPYPYFDKNVKEPHCYFLWGLRLKKNICIDMTDLEEEFRFYLSNGYEGRPGCDVYLTLLNRFQLPSFVYFKSSELRQHSKPYWTNESYNYYRRIPRYSQHYPVFLVGYVAVDNEAINHVGN*

Protein Length: 581

Fln nts: ATGAGGGATGACATATATTCTCCCAAATACACAACCACTCGTATCAACGCAGAGGACGCGGTGGTTCGTAGTAATTTTGCATATTCCCCTCAGAAGCAGTGAAGATCGAACTATCTGGACAAAGTAGCCTTTGCAGTTGCTCTCCATTTAAGCTTGGCCGTACCTCAACAATCTTTTCTTCACTCAGATATCGACAATTCTGTAAATAGTTTGGCAGGATTCATTTGTACAGTTCTTGCAGGTTTTCTGGGGTTCCGGATTTCATTTACAGATACATTTGAAAACTTAGTGCCCATCAGTTTGGTTTTACTGGCCTCAATTTCTCCAGTGCGTTTTAGGGTGTGAATTGAAGCAGACCGAGGCTTGGAAAGCTTGGCATAT_-_ATGCATCCGTCGCAGAGACCCCCTCAGAGTGGCGTTATGAGCCCTACAAGTGCCATGTCGGCGCCTATCATGAGGCCCGCTGTGGCCGTTATACCTCCTGCGACGCTTGTTTCTATGCCCAATGCGAGGCCCCATATTGGTATCTTTGGCTCAACTGCTGCTGCTGCTCCTGTGTCTGGGCCCATCATGACGGTGCCGCCTATCCCTGGAAATGTATTTTTGGATTCGCCCTCTGAGATTGATATTGCTAGAACACATGCTCTTGAAAAGTTCCAAATTGACGCAGAATTGATATTGACTGAAAAAGAAGAAGCAAAGAGGCGAAGCGTACTGGCTCAACTTGAACAGATTGTCAAACGCTGGGCGAGGAGAGTAACTCGGCAAAGAGGTCTCCCAAAAGATCTGAAAGAAAGCAGTAATGCAAAAATATTCACCTTTGGGTCTTATCAGTTAGGGGTCCATGGACCAGAAGCAGATATTGATGCTTTGTGTGTTGGACCATGTTATGCAACATTGGAGGACGACTTTTTTATTGTTTTGCACAACATGCTTAAGAACACACAAGAAGTTTCAGAGGTTCAATGTGTGAAGAGTGCAAATGTTCCCTTGATGCGGTTTAAATTCAGTGGGATTTCAATTGATCTCTTATATGCAAGGCTTTCTCTGAGAACAATTCCAGAAGATATGGATATTCTCGATGAAAAATTGCTTGAGAATATTGATGATACAACTGTCAAAAGTTTGAATGGATGCAGAGTTACCGCACGGATCCTTCAGCTAGTACCCAAGATTGAGAACTTCCGTTCCACCCTGAGATGCATCAAGTTTTGGGCAAAGAGGAGAGGAATATATTCACATACTTTCGGGTTTCTTGGAGGAATACACTGGGCTGTGCTTGTTGCACGTGTTTGCCAAATGTTTCCAAATGCCACCGTCAGTATGCTGGTTTCAAGATTTTTTTGGATATATGCACATTGGCAGTGGCCAACTCCAGTGACATTGGTGGAGACCCAGCCTGATTATTCTGATGGATCAGATAGACATCACCATATGCCAATTATCATACCAGTGTACCCCTATAGTTGCTGCAGTTACAATGTTACAAGAAGCACCCTACAAAAACTCAAGTCAGAATTTTCACGTGGCTGGGATGCAATAATGAAAATGGAGTTAAATTGGAGCACCTTGCCAAATAGTGGTGACTGGAATGTACTCTTTGAACGGTTTCCTTTCTGCTCTAGTTATGATTTTTTCATTCAAATCCATGTTACAGCTTCAGATGAAGATGATTTTCGGAGTTGGAGAGGGTGGGTTGAATCACGTTTCCGTCATCTTCTCTTGAAGTTTGAAAAGCTTCCAGCATACTGTGATCCAAATCCATACCCATATTTTGACAAGAATGTAAAGGAGCCACATTGTTATTTTTTATGGGGACTAAGACTGAAGAAAAACATTTGTATTGATATGACTGATTTGGAGGAGGAGTTCAGGTTTTACCTCAGCAATGGATATGAAGGCCGACCAGGATGTGATGTTTATCTGACCTTGCTCAATCGATTTCAATTACCATCTTTTGTGTATTTCAAATCATCGGAACTCAGACAACACTCTAAACCATACTGGACAAATGAAAGCTATAACTACTATCGTAGAATTCCTAGATACTCTCAACATTACCCAGTTTTTCTTGTTGGCTACGTCGCAGTTGATAATGAAGCCATAAATCATGTTGGGAATTAG___AAGGGTTCTACTTCAGCTAGACTAGTAATTTCACGAGATGTGAAATTGAAGAAATTTTGGCCTGTATCTGGGAGTGCAAATTACACGCACAGAACTTCTATTTTGAAATCATTGTTGCAGTCTCAATTTGAAAATTCAAAACGAGCACAATATGCTGTTAAAGCTCGCTTACTTGTTTAAATGTAAAAACAAAATTGTTTTTGCAAATGATTAGATTGGCAAGCTCCATGCAAAACGATGATGATACGCTGAGTTCCTACATGCATCATGATAATGATATAACTATTTCTAGAATAGTCTAAATTTTGAAAAAGCCAACCCACTTTTTTCTGGACACTTTTATTTATATCATCAGGGCTAAATTAATTTGG

Fln Alignment:

Contig5528___MRPAVAVIPPATLVSMPNARPHIGIFGSTAAAAPVSGPIMTVPPIPGNVFLDSPSEIDIARTHALEKFQIDAELILTEKEEAKRRSVLAQLEQIVKRWARRVTRQRGLPKDLKESSNAKIFTFGSYQLGVHGPEADIDALCVGPCYATLEDDFFIVLHNMLKNTQEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENIDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHTFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFWIYAHWQWPTPVTLVETQPDYSDGSDRHHHMPIIIPVYPYSCCSYNVTRSTLQKLKSEFSRGWDAIMKMELNWSTLPNSGDWNVLFERFPFCSSYDFFIQIHVTASDEDDFRSWRGWVESRFRHLLLKFEKLPAYCDPNPYPYFDKNVKEPHCYFLWGLRLKKNICIDMTDLEEEFRFYLSNGYEGRPGCDVYLTLLNRFQLPSFVYFKSSELRQHSKPYWTNESYNYYRRIPRYSQHYPVFLVGYVAVDNEAINHVGN
D5A854______________MRPQIAVMPPATLVSVPNARPHIGISGSTAP--PVSGPLMTVPPIPGHVFLDSPTDIDIARTHALEKFQIDAELILTEKEEAKRRSVLAQLEQIVKRWARRVTWQRGLPKDLKESSNAKIFTFGSYQLGVHGPEADIDALCVGPCYATLEDDFFIVLYNMLKKTAEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENLDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHIFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFWIYAHWQWPTPVTLVETQPDHADGSDRHHHMPIIIPVHPYSCCSYNVTRSTLQKLKSEFSRGWDAIMKMETKWGTLPNSGDWNILFERFPFCSSYEYFIQIYVTASDEDDFRSWRGWVESRFRHLLLKFEKLPAYCDPNPYPYFDKNVKEPHCYFLWGLKLRKNISVDMADLEDEFRLYLSNGYEGRPGCDVHLTLLNRFQLPSFANSKSSELRQHSKPYWTNESYNYYRRIPRYSQYYPLYVVGYIAVDKEAINHVGN

SNPs (tot: 6)

Position	A %	G %	T %	Probability
1201	90	10		0.90298
1202		10	90	0.90298
1817	12	87		0.992554
1864		85	14	0.993533
1866	85	14		0.993533
1954	89	10		0.999919

SSRs (tot: 1)

Start position	End position	Sequence	Length
536	549	CTG CTG CTG CTG CT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain