SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5522

Length: 3165 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene5522
AATGTAACATTTATGCGAAAACTTGCTCAGGGACCCAGATTTCCGTACGGATGCTGTGAAGGGATACCATTCAGCTTTTGAAGCCACCAATGGCCAGCTACATCGCCACAGCATAGATGATTCCATGAGTGGCACGACTGCAATAACTGTCCTAGTGAGAGGTGATACATTGTATGTTGCCAATGTCGGAGATTCTAGGGCTGTTATCGCAGAGAGAAGGGGAAAGGACCTTGTCGCAGTGGACCTCTCCAGTGACCAGACACCTTTCCGAGCAGATGAGTGTGCTCGTGTGAGAAGATGTGGAGCACGGGTGTTGACTCTGGACCAGCTTGAAGGGTTGAAAAACCAGAATGTACAGTGTTGGGGAGGTGAAGAAGATGACGATGGAGATCCTCCTCGCCTTTGGGTTCAAAATGGGATGTATCCTGGCACTGCCTTTACTAGAAGTGTTGGAGATACTATTGCTGAAAACATAGGGGTTACTTCAGTTCCTGAGGTTCTTGTGATGCAGCTTACACCTATGCATCCATTCTTTGTTATTGCAAGTGATGGAGTTTTTGAGTTTCTCTCCAGTCAAGCAGTGGTTGATATGGTTGCCAAATTCAAAGATCCTCGCGATGCTTGTGCTGAAATTGTTGCTGAATCATACCGCTTATGGTTGGAATATGAAACTCGCACTGATGACATTACAGTTATTGTTGTACAGATTAATGGCTTCCAAAACTCAGGTACAGTAAAGCTGGTAAATAATCATAATGCAAAGCTAGTCCACGACCTCTCAGGAGCAGAAGAAAGCAATGGATCACCTTTATCTAGTGGGGAGAGTGTTAGGACCTCTCGTCCTGTACGGCATGATTTATCGCGAACACGTGTCAGGGCCATTGAGTCTTCTTTAGAGCATGGCCCAGTTTGGACTCCTCCAAATTTATCTGTTCAAAAGACTCCAGAAGAATTAGATCATATTGGACGGGCACTGCAAGGAAATTTTCTCTTCAACAAATTATCGAAGGCACAATCTCAGATGTTATATGATTGCATGGAAAGGGTTCAAGTTAGGGCAGGAGATATTGTTATCCGACAGGGTGCAGAAGGAAATTGTTTCTATATTGTTCAAAAAGGAGAGTTTGAAGTCTTAATTTCCAAGGAAGGGAGTCCTGATGAGGAGCTTGGCACAGTTGTGCACCGCTACACTTCTAATAAGTTTTCATGCTTTGGGGAGTTGGCTCTTATGTACAACAAACCACTCCAAGCTTCTGTCCGTGCTTTAACCGATGGTTCTCTCTGGGCTCTGAAAAGAGAGGACTTTCGTGGAGTCATTTTAACAGGATTCACCAATCCTTCTATGTTAAATGTCATACGGTCTGTAGATGTGCTTGCAAAGTTAAGCGTCTTACAGATTAACCGTTTAGCAGGTTCATTATCAGAAGTTTCATTTATGGATGGAGAAAGAATAGTTGATAAGCATGAGAATCTTTCAGCATTTTATATTGTTCAGCATGGAGAGGTGGAATTAACCTATCATTCAGAGTTAGATTCAGAGTCAACTACCTGGGAGATCCTTTCTCATGATAATGGGTGGGAAGATTTAAATGAAAGTCAGAAGTGCTCAAGGAGGAAAGAGGGGAGTTATTTTGGAGAACGGATTCTTCTTGGTGAGCAGATCAATTCAGTAACTGCAGTTGCTATTGGTAATGTTGTGTGTTTGATGATCACAAAGGAGAAGTTTGATTCATTGGTGGGGCCCTTGTACAGAATCAACCAAGATGATATCCACATAAGAGATCACACAAGGAGAGAACATAAGCTGGATATCAAGGCCACAGATTTCTCAGGAGTCCAGATATCAGAGCTGGAATGGCAAAGAACGGTGTATGCTACAGACTGCTGTGAAATTGGACTGGTTCTTAAGAAGGAATCAGAGAATCTGCTGAGCTTGAAAAGGTTTTCAAAGCACAAGATAAAGCAGCTTGGACGTGAAGTACAGGTTCTTGAGGAGAAGGCTCTTATGAAGAGTTTGTGTCCCTCATTATTTGTGCCACAGGTCCTCTGTTCATGTGCTAATCAAGAATTTGCTGCTATTTTGCTGAACACAAGTCTAGCTTGTCCTTTGGCAGCAATTCTGCATGCACCATTAAAAGAAGATTCTGCTCGTTTTATTTCTGCTTCGGTTGTTGTAGCTGTGGAACTGTTGCACAAGGATGGAGTTTTATACAGGGGTGTTTCACCTGATATTCTAATGGTTGATCAGAAAGGCCATTTGCAGCTGGTTGACTTCCGGTTTGACAAAAAAGCTATCTGATGAAAGAACATTCACAATATGTGGGATGGCAGACTACTTAGCCCCAGAAATAATTCAGGGAAAAGGACATGGGCTTACTGCAGACTGGTGGGCTTTAGGAGTGCTTATCTATTTTATGTTGCATGGTGATCTTCCATTTGGGTCATGGAGAGAAAGTGATTTGGACATTTTTGCAAAAATTGCACGAGGAGAGTTGTTGTTCCCAAACCATTTTAGTTTGGAGGTTATTGACCTACTGAAAAAGTTGCTACAAGTTGATGACAATGCCAGACTCGGTTGTAAGGGAGCAAATTCAATTAAGAGTCATCCTTGGTTCAAAGATATGGATTGGAAATGCCTTTCAGAATGTGGTGTACCTGTGCCTGAAGAGATCTTATCTCGTATTGATTCAATGTCTGAACTTCATTATGCCGATGAACACCAGTTGTCTGGTCTTTGTTCATCAATTGACTTGAAAGACTTAAATACACAAGAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAACTGGCTAGATATTTTACTGATTGTACAAATTCAATTCCTTTGAAACATTTCTTGGTTTTCACCTAGTTTACGTTTTCCACTGTAAAGGCAAACTTGTCAAATCTGTGCACTAGATAAAAAATGTACACAGCAAAAGTTTTTCACGCCTCGGAAATTTTGAATGATGTGTTTGTGCCATGTCAAAACTGAGAGATTTGCTATGATTCTCAGATCCATAATCGCAAAATTCAAGAGTGCA

Ace file of the UniGene sp_v3.0_unigene5522 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cAMP-dependent protein kinase [Arabidopsis thaliana]	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.954e-07	-

Source	Gene names
Sma3	At2g20050; At3g06270; CHLREDRAFT_114555; CHLREDRAFT_127872; F28L1.21; GSVIVT00016693001; GSVIVT00019870001; LOC_Os07g45170; OSJNBa0063E14.1-1; OSTLU_4795; Os02g0281000; Os07g0646100; OsI_06757; OsI_27094; OsJ_06259; P0503D09.114; P0669G10.18-1; PHATRDRAFT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cAMP-dependent protein kinase complex	GO:0005952	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cAMP-dependent protein kinase regulator activity	GO:0008603	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	regulation of protein phosphorylation	GO:0001932	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	cAMP/cGMP-dependent protein kinase	IPR002373	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR014045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20050.1	" protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases chr2:8649779-8654193 REVERSE LENGTH=1094"	56%
RefSeq	Arabidopsis thaliana	NP_179595.5	protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002324434.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLH8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 766 - 526

Fln protein: M*HLCENLLRDPDFRTDAVKGYHSAFEATNGQLHRHSIDDSMSGTTAITVLVRGDTLYVANVGDSRAVIAERRGKDLVAVDLSSDQTPFRADECARVRRCGARVLTLDQLEGLKNQNVQCWGGEEDDDGDPPRLWVQNGMYPGTAFTRSVGDTIAENIGVTSVPEVLVMQLTPMHPFFVIASDGVFEFLSSQAVVDMVAKFKDPRDACAEIVAESYRLWLEYETRTDDITVIVVQINGFQNSGTVKLVNNHNAKLVHDLSGAEESNGSPLSSGESVRTSRPVRHDLSRTRVRAIESSLEHGPVWTPPNLSVQKTPEELDHIGRALQGNFLFNKLSKAQSQMLYDCMERVQVRAGDIVIRQGAEGNCFYIVQKGEFEVLISKEGSPDEELGTVVHRYTSNKFSCFGELALMYNKPLQASVRALTDGSLWALKREDFRGVILTGFTNPSMLNVIRSVDVLAKLSVLQINRLAGSLSEVSFMDGERIVDKHENLSAFYIVQHGEVELTYHSELDSESTTWEILSHDNGWEDLNESQKCSRRKEGSYFGERILLGEQINSVTAVAIGNVVCLMITKEKFDSLVGPLYRINQDDIHIRDHTRREHKLDIKATDFSGVQISELEWQRTVYATDCCEIGLVLKKESENLLSLKRFSKHKIKQLGREVQVLEEKALMKSLCPSLFVPQVLCSCANQEFAAILLNTSLACPLAAILHAPLKEDSARFISASVVVAVELLHKDGVLYRGVSPDILMVDQKGHLQLVDFRFDKKAI*

Protein Length: 767

Fln nts: AATGTAACATTTATGCGAAAACTTGCTCAGGGACCCAGATTTCCGTACGGATGCTGTGAAGGGATACCATTCAGCTTTTGAAGCCACCAATGGCCAGCTACATCGCCACAGCATAGATGATTCCATGAGTGGCACGACTGCAATAACTGTCCTAGTGAGAGGTGATACATTGTATGTTGCCAATGTCGGAGATTCTAGGGCTGTTATCGCAGAGAGAAGGGGAAAGGACCTTGTCGCAGTGGACCTCTCCAGTGACCAGACACCTTTCCGAGCAGATGAGTGTGCTCGTGTGAGAAGATGTGGAGCACGGGTGTTGACTCTGGACCAGCTTGAAGGGTTGAAAAACCAGAATGTACAGTGTTGGGGAGGTGAAGAAGATGACGATGGAGATCCTCCTCGCCTTTGGGTTCAAAATGGGATGTATCCTGGCACTGCCTTTACTAGAAGTGTTGGAGATACTATTGCTGAAAACATAGGGGTTACTTCAGTTCCTGAGGTTCTTGTGATGCAGCTTACACCTATGCATCCATTCTTTGTTATTGCAAGTGATGGAGTTTTTGAGTTTCTCTCCAGTCAAGCAGTGGTTGATATGGTTGCCAAATTCAAAGATCCTCGCGATGCTTGTGCTGAAATTGTTGCTGAATCATACCGCTTATGGTTGGAATATGAAACTCGCACTGATGACATTACAGTTATTGTTGTACAGATTAATGGCTTCCAAAACTCAGGTACAGTAAAGCTGGTAAATAATCATAATGCAAAGCTAGTCCACGACCTCTCAGGAGCAGAAGAAAGCAATGGATCACCTTTATCTAGTGGGGAGAGTGTTAGGACCTCTCGTCCTGTACGGCATGATTTATCGCGAACACGTGTCAGGGCCATTGAGTCTTCTTTAGAGCATGGCCCAGTTTGGACTCCTCCAAATTTATCTGTTCAAAAGACTCCAGAAGAATTAGATCATATTGGACGGGCACTGCAAGGAAATTTTCTCTTCAACAAATTATCGAAGGCACAATCTCAGATGTTATATGATTGCATGGAAAGGGTTCAAGTTAGGGCAGGAGATATTGTTATCCGACAGGGTGCAGAAGGAAATTGTTTCTATATTGTTCAAAAAGGAGAGTTTGAAGTCTTAATTTCCAAGGAAGGGAGTCCTGATGAGGAGCTTGGCACAGTTGTGCACCGCTACACTTCTAATAAGTTTTCATGCTTTGGGGAGTTGGCTCTTATGTACAACAAACCACTCCAAGCTTCTGTCCGTGCTTTAACCGATGGTTCTCTCTGGGCTCTGAAAAGAGAGGACTTTCGTGGAGTCATTTTAACAGGATTCACCAATCCTTCTATGTTAAATGTCATACGGTCTGTAGATGTGCTTGCAAAGTTAAGCGTCTTACAGATTAACCGTTTAGCAGGTTCATTATCAGAAGTTTCATTTATGGATGGAGAAAGAATAGTTGATAAGCATGAGAATCTTTCAGCATTTTATATTGTTCAGCATGGAGAGGTGGAATTAACCTATCATTCAGAGTTAGATTCAGAGTCAACTACCTGGGAGATCCTTTCTCATGATAATGGGTGGGAAGATTTAAATGAAAGTCAGAAGTGCTCAAGGAGGAAAGAGGGGAGTTATTTTGGAGAACGGATTCTTCTTGGTGAGCAGATCAATTCAGTAACTGCAGTTGCTATTGGTAATGTTGTGTGTTTGATGATCACAAAGGAGAAGTTTGATTCATTGGTGGGGCCCTTGTACAGAATCAACCAAGATGATATCCACATAAGAGATCACACAAGGAGAGAACATAAGCTGGATATCAAGGCCACAGATTTCTCAGGAGTCCAGATATCAGAGCTGGAATGGCAAAGAACGGTGTATGCTACAGACTGCTGTGAAATTGGACTGGTTCTTAAGAAGGAATCAGAGAATCTGCTGAGCTTGAAAAGGTTTTCAAAGCACAAGATAAAGCAGCTTGGACGTGAAGTACAGGTTCTTGAGGAGAAGGCTCTTATGAAGAGTTTGTGTCCCTCATTATTTGTGCCACAGGTCCTCTGTTCATGTGCTAATCAAGAATTTGCTGCTATTTTGCTGAACACAAGTCTAGCTTGTCCTTTGGCAGCAATTCTGCATGCACCATTAAAAGAAGATTCTGCTCGTTTTATTTCTGCTTCGGTTGTTGTAGCTGTGGAACTGTTGCACAAGGATGGAGTTTTATACAGGGGTGTTTCACCTGATATTCTAATGGTTGATCAGAAAGGCCATTTGCAGCTGGTTGACTTCCGGTTTGACAAAAAAGCTATCTGA___TGAAAGAACATTCACAATATGTGGGATGGCAGACTACTTAGCCCCAGAAATAATTCAGGGAAAAGGACATGGGCTTACTGCAGACTGGTGGGCTTTAGGAGTGCTTATCTATTTTATGTTGCATGGTGATCTTCCATTTGGGTCATGGAGAGAAAGTGATTTGGACATTTTTGCAAAAATTGCACGAGGAGAGTTGTTGTTCCCAAACCATTTTAGTTTGGAGGTTATTGACCTACTGAAAAAGTTGCTACAAGTTGATGACAATGCCAGACTCGGTTGTAAGGGAGCAAATTCAATTAAGAGTCATCCTTGGTTCAAAGATATGGATTGGAAATGCCTTTCAGAATGTGGTGTACCTGTGCCTGAAGAGATCTTATCTCGTATTGATTCAATGTCTGAACTTCATTATGCCGATGAACACCAGTTGTCTGGTCTTTGTTCATCAATTGACTTGAAAGACTTAAATACACAAGAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAAATGGCTGGATGAGTGGTAGCAGTTTACTGCAGAGGTATCTTGGCCATCCTGATGCTACTAATGAGTTGGATGCCTAACTGGCTAGATATTTTACTGATTGTACAAATTCAATTCCTTTGAAACATTTCTTGGTTTTCACCTAGTTTACGTTTTCCACTGTAAAGGCAAACTTGTCAAATCTGTGCACTAGATAAAAAATGTACACAGCAAAAGTTTTTCACGCCTCGGAAATTTTGAATGATGTGTTTGTGCCATGTCAAAACTGAGAGATTTGCTATGATTCTCAGATCCATAATCGCAAAATTCAAGAGTGCA

Fln Alignment:

Contig5522___PDFRTDAVKGYHSAFEATNGQLHRH-SIDDSMSGTTAITVLVRGDTLYVANVGDSRAVIAER-RGKDLVAVDLSSDQTPFRADECARVRRCGARVLTLDQLEGLKNQNVQCWXXXXXXXXDPPRLWVQNGMYPGTAFTRSVGDTIAENIGVTSVPEVLVMQLTPMHPFFVIASDGVFEFLSSQAVVDMVAKFKDPRDACAEIVAESYRLW-LEYET-RTDDITVIVVQIN
B8LLH8______________PEIFLTLKESFLKAFKVMDKELRLHPTIDCFCSGTTAVTLVKQGQDLVIGNVGDSRAVLGTRVQDNSLSAVQLTVDLKPNLPREAERIRQCKGRVFALHDEPEVS------------------RVWLPHNDSPGLAMARAFGDFCLKDFGLIAVPDVSYRRLTERDEFIVLASDGVWDVLSNKEVVDIVASAPSQTTAARALVEYAVRAWRLKYPTSKVDDCAVVCLFLN

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1272	81			18	0.999994
1318		10		90	0.90298
1374		66		33	1.0
1404		10		90	0.90298
1406		10	90		0.90298
1407	10		90		0.90298
1513		90		10	0.90298
1514		90		10	0.90298
1543		85		14	0.993533
1544		83	16		0.994512
1545	16	83			0.994512
1546			16	83	0.994512
1549			16	83	0.994512
1550	16			83	0.994512
1552	20	80			0.995493
1553			20	80	0.995493
1556	20			80	0.995493
1557	20			80	0.995493
1559	80		20		0.995493
1560			80	20	0.995493
1564			20	80	0.995493
1565	20			80	0.995493
1567			20	80	0.995493
1711	75			25	0.996473
1786		83		16	0.994512
1787			16	83	0.994512
1828	66			33	1.0
2393		20		80	0.995493
2414		25		75	0.996473
2674	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain