SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5509

Length: 1993 nt

UniGene Fasta

>sp_v3.0_unigene5509
ATGGGGGCACATAGAAAGAGGGGGAGCTGCCGGCACCAGTTTGTTCATCAATTCACTGTAATATCTTCGGCATTCGACAGATCCTAATCCGAAGGTACGCTACTCCCCAGTCCTTCGATCTGAAGTTTACTTGCCGCTCGGATCTCCAATCAATCCTCCGAGGCCAGGCAATTATGAAGTTTGTGCCTATACTTGCTTTCTACATTTTGCTACTATGTAGTTCTGTACACAATGTAAGATGCCTAAGGGAATCATCTGATGATAGCTCAAAGAAAAATAAATTTCGTGAACGGGAAGCAACCGATGACAATCTTCCATTGCCCACCTTAGATGAGGATGCATTGCTAAACACAAAATGTCCTCAGAATGTGGAGTTGAGGTGGCAGACTGAAGTAAGCTCAAGCATTTATGCAACACCTTTAATTGCTGATATTAACAGCGATGGTAAATTAGAAATAGTGGTTCCTTCTTTTGTACATTATCTGGAAGTGCTAGAAGGCTCAGACGGAGACAAAATGCCAGGTTGGCCGGCATTCCATAAGTCAACTGTCCATGCCAGTCCACTACTATATGATATTGATAAGGATGGGATCAGAGAAGTAGCTTTAGCAACATATAATGGTGAAGTTATCTTTTTCAGGGTTTCAGGGTATTTAATGTCGGATAAATTGGAGGTTCCCCGTTTACGAGTTCACAAAGATTGGTACGTTGGGTTAGGAAAAGATCATGCAGATCGTGCTCATCCTGATGTGCATGATGAAGTTCTAATTCAGGAGGCTATTGACAATAAAGCTGTATCCGATCATCAGGGTAATGCTAAAGAAACAAAGTCCAATGAGTCATTTTCGTCAAATGGAGTTCTTGAACATCAAGCTTCAAGCAATGCATCTAATTCAGAATTGTTATCTCATGCCTCTCAGAATGGTAGCCTCGAATCTGCTTCAGAACACAATGACCAAACGAAACCTACAGTCGAGCTTCCCAAACATACAACCACTGAACTGCATAATGAAAGTAAAACAAATGTCACTAAAGAAGACAATGAAGTGGCTTAGTGATCAGCCAATCCATGCAATGATAGACTAAATATGGGAGTAACAACAAACGCTACTGATACAGTAAAGTCAATGGGTTCTCAGAGGCGGCTTCTTACAGAATCTGAAACAGAAATTTCCAAGGAAGGTGATACCGAAGGAGCTGCTACTGTAAAAAATAATCAGGATCTGGCGGAGGAGGCAGATTCTTCTTTTGATCTGTTTCGAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATCCAAAACCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTCGGCAGAATTGGGTGGTATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTTGATCTGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGGAAAAACAAGGGGAGGCTTTCCACTACAAATGGGTGAGATTCAAGGACAAGTCATAGCTGCTGACATTAATGATGATGGGAAAATTGAAATGGTCACAACTGATACACGAGGCAATGTGGCTGCATGGACTACTCAAGGAAAAGAAATTTGGGAACAACATTTAAAGAGTCTTATTGCGCAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACAT

Ace file of the UniGene sp_v3.0_unigene5509

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	defective in exine formation [Arabidopsis thaliana]	-	-	0.0	56%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	60%

Source	Gene names
Sma3	At3g09090; DEX1; GSVIVT00021462001; LOC_Os03g61050; MICPUN_88340; MZB10.12; OJ1111_B11.16; Os03g0825700; OsI_14141; OsJ_13190; PHYPADRAFT_172150; POPTRDRAFT_735721; RCOM_0085050; VITISV_018283;

Source	GOs	Term	Type	e value	Identity
Sma3	pollen wall assembly	GO:0010208	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	FG-GAP	IPR013517	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G09090.1	DEX1 defective in exine formation protein (DEX1) chr3:2782912-2787552 REVERSE LENGTH=896	58%
RefSeq	Arabidopsis thaliana	NP_001118602.1	defective in exine formation protein (DEX1) [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002322957.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9IG47

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 606 - 701

Fln protein: MKFVPILAFYILLLCSSVHNVRCLRESSDDSSKKNKFREREATDDNLPLPTLDEDALLNTKCPQNVELRWQTEVSSSIYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHKSTVHASPLLYDIDKDGIREVALATYNGEVIFFRVSGYLMSDKLEVPRLRVHKDWYVGLGKDHADRAHPDVHDEVLIQEAIDNKAVSDHQGNAKETKSNESFSSNGVLEHQASSNASNSELLSHASQNGSLESASEHNDQTKPTVELPKHTTTELHNESKTNVTKEDNEVA**SANPCNDRLNMGVTTNATDTVKSMGSQRRLLTESETEISKEGDTEGAATVKNNQDLAEEADSSFDLFRDGEDGLTDEYAYDYDDYVDESAWGDEDFAEAQHPKPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHSAELGGIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVDLDGDGYLDILVGTSFGFFYVLDHHGKTRGGFPLQMGEIQGQVIAADINDDGKIEMVTTDTRGNVAAWTTQGKEIWEQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGN

Protein Length: 607

Fln nts: ATGGGGGCACATAGAAAGAGGGGGAGCTGCCGGCACCAGTTTGTTCATCAATTCACTGTAATATCTTCGGCATTCGACAGATCCTAATCCGAAGGTACGCTACTCCCCAGTCCTTCGATCTGAAGTTTACTTGCCGCTCGGATCTCCAATCAATCCTCCGAGGCCAGGCAATT_-_ATGAAGTTTGTGCCTATACTTGCTTTCTACATTTTGCTACTATGTAGTTCTGTACACAATGTAAGATGCCTAAGGGAATCATCTGATGATAGCTCAAAGAAAAATAAATTTCGTGAACGGGAAGCAACCGATGACAATCTTCCATTGCCCACCTTAGATGAGGATGCATTGCTAAACACAAAATGTCCTCAGAATGTGGAGTTGAGGTGGCAGACTGAAGTAAGCTCAAGCATTTATGCAACACCTTTAATTGCTGATATTAACAGCGATGGTAAATTAGAAATAGTGGTTCCTTCTTTTGTACATTATCTGGAAGTGCTAGAAGGCTCAGACGGAGACAAAATGCCAGGTTGGCCGGCATTCCATAAGTCAACTGTCCATGCCAGTCCACTACTATATGATATTGATAAGGATGGGATCAGAGAAGTAGCTTTAGCAACATATAATGGTGAAGTTATCTTTTTCAGGGTTTCAGGGTATTTAATGTCGGATAAATTGGAGGTTCCCCGTTTACGAGTTCACAAAGATTGGTACGTTGGGTTAGGAAAAGATCATGCAGATCGTGCTCATCCTGATGTGCATGATGAAGTTCTAATTCAGGAGGCTATTGACAATAAAGCTGTATCCGATCATCAGGGTAATGCTAAAGAAACAAAGTCCAATGAGTCATTTTCGTCAAATGGAGTTCTTGAACATCAAGCTTCAAGCAATGCATCTAATTCAGAATTGTTATCTCATGCCTCTCAGAATGGTAGCCTCGAATCTGCTTCAGAACACAATGACCAAACGAAACCTACAGTCGAGCTTCCCAAACATACAACCACTGAACTGCATAATGAAAGTAAAACAAATGTCACTAAAGAAGACAATGAAGTGGCTTAGTGATCAGCCAATCCATGCAATGATAGACTAAATATGGGAGTAACAACAAACGCTACTGATACAGTAAAGTCAATGGGTTCTCAGAGGCGGCTTCTTACAGAATCTGAAACAGAAATTTCCAAGGAAGGTGATACCGAAGGAGCTGCTACTGTAAAAAATAATCAGGATCTGGCGGAGGAGGCAGATTCTTCTTTTGATCTGTTTCGAGATGGAGAAGATGGCTTGACTGATGAATATGCATATGACTATGATGACTATGTTGATGAATCAGCTTGGGGAGATGAAGACTTTGCTGAGGCCCAACATCCAAAACCAGAAGATTTTGTCAATATTGATTCTCATATCCTCTGCACTCCAGTGATAGCAGATATTGACAAGGATGGTGTAGATGAGATGATTGTTGCAGCATCTTACTTTTTTGATCATGAGTATTATGACAACCCTGCACATTCGGCAGAATTGGGTGGTATAGATGTTACTAAATATGTTGCTGGTGCAATTGTGGTTTTTAATCTTGATACCAAACAAGTTAAGTGGAGCACTCAACTGGATCTTAGCACAGACTCTGGAACCTTCCGTGCCCATATCTACTCTTCTCCTTCAGTGGTTGATCTGGATGGTGATGGTTATTTGGACATTCTTGTGGGAACTTCATTTGGCTTCTTTTATGTTTTAGATCACCATGGAAAAACAAGGGGAGGCTTTCCACTACAAATGGGTGAGATTCAAGGACAAGTCATAGCTGCTGACATTAATGATGATGGGAAAATTGAAATGGTCACAACTGATACACGAGGCAATGTGGCTGCATGGACTACTCAAGGAAAAGAAATTTGGGAACAACATTTAAAGAGTCTTATTGCGCAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACAT

Fln Alignment:

Contig5509___VPILAFYILLLCSSVHNVRCLRESSDDSSKKNKFREREATDDNLPLPTLDEDALLNTKCPQNVELRWQTEVSSSIYATPLIADINSDGKLEIVVPSFVHYLEVLEGSDGDKMPGWPAFHKSTVHASPLLYDIDKDGIREVALATYNGEVIFFRVSGYLMSDKLEVPRLRVHKDWYVGLGKDHADRAHPDVHDEVLIQEAIDNKAVSDHQGNAKET--KSNESFSSNGVLEHQXXXXXXXXXXXXXXXQNGSLESASEHND-QTKPTVELPKHTTTELHNESKTNVTKEDNEVA**SANPCNDRLNMGVTTNATDTVKSMGSQRRLLTESETEISKEGDTEG---------AATVKNNQDLAEEADSSFDLFRDGEDGLTXXXXXXXXXXXXXSAWGDEDFAEAQHPKPEDFVNIDSHILCTPVIADIDKDGVDEMIVAASYFFDHEYYDNPAHSAELGGIDVTKYVAGAIVVFNLDTKQVKWSTQLDLSTDSGTFRAHIYSSPSVVDLDGDGYLDILVGTSFGFFYVLDHHGKTRGGFPLQMGEIQGQVIAADINDDGKIEMVTTDTRGNVAAWTTQGKEIWEQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGN
B9IG47______________IRVFLICFLLFTTSIHG---------DESKKNKFRDREATDDALGYPDIDENALLNTQCPKNLELRWQTEVSSSVYATPLIADINSDGKLDVVVPSFVHYLEALEGSDGDKIPGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGEVLFFRVSGYMMTDKLEVPRRRVKKNWYVGLDPDPVDRSHPDVHDDQLVLEATENKSQSHTTGNTHQNTPETNSSISTSTENSHPA---------------NASIETGKKMSENQTKTMIKL----SSQVDNSSVGAGSNGTDNAQNGTNKTQNGTITVEKETNNAENGTNTG--RRLLEDDNSKGSHEGGSESKENDHENVHAATVENDEGLEADADSSFELFRESDE-LADEYSYDYDDYVDESMWGDEEWKERKHERLEDYVNIDSHILCTPVIADIDNDGVTEMIVAVSYFFDHEYYDNPEHLKELGDIDVGKYVASSVVVFNLDTKQVKWTRELDLSTSTAKFRAYIYSSPSVVDLDGDGNLDILVGTSFGLFYVLDHHGNIRENFPLEMAEIQGAVVAADINDDGKTELVTTDVHGNVAAWTSQGKEIWEKHLKSLVSQGPTIGDVDGDGHTDVVVPTLSGN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
832			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain