SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5507

Length: 3017 nt

UniGene Fasta

>sp_v3.0_unigene5507
ATGGGGGCTCTCTCGAATGCACAACCCCTCGTATCAGGTTCGCGTGAACAAGGCAAAACGCACTTTCCTCCATTCATTTATCATCATACTAGCAAACTATATAATGACCGTCAATTCAGAGAGGCGTTTCAATTCAGTGCTGCCCCTTCCATGAAGGCCTGCACCAGTATGACGGTTTAAGCAATTTTGCAGAGTTTAGGGTTGTTAACTATAAACTCTATCGATGGCGGAAACTCTCAAGGTCTCACCGTGCTTCTCTTACAGTTCGCACAATTACATTGGCCGTCATAAGTATAGTAGCAGGAGGAGCAAGGAAGGGATTTCGCTGAATTCGTTTAATGGATTGAAGGCTTTAGCTGGTTTTCCTCTACGCTCACCATCAATCCAGGGTTTCAGAGCCAATGACTTGTTGCTTTGCAAGGCCTCTGATTCAACCTCCACCAGTGTCCGTGGAAGAACACTGATCGTTTCCATGGCTGCAGATGGACCATCACGGGACGTGCCACTGTCAGAATATAGAAATATTGGAATTATGGCCCACATAGATGCAGGGAAAACCACTACTACAGAAAGGATTCTTTACTATACAGGCAAAAACTATAAAATTGGGGAGGTTCACGAGGGAACAGCTACTATGGACTGGATGGAGCAGGAGCAAGAAAGAGGCATAACCATTACCTCTGCTGCAACTACATGTGCATGGAATGATCATCGTATAAACATTATTGATACTCCTGGACATGTGGACTTCACACTCGAAGTGGAACGTGCCCTTAGAGTTCTTGACGGTTCTATCTGTCTATTTGACAGTGTTGCTGGTGTTGAGCCACAATCAGAGACTGTATGGAGACAAGCAGATAGGTATGGTGTTCCCAGAATTTGTTTTGTTAACAAAATGGATCGACTTGGAGCAAACTTCTTCAGGACAAGAGACATGATAGTAACAAACCTAGGGGCAAAACCTCTTGTTCTGCAAATTCCCATTGGGGCAGAGGAACGTTTTCAGGGACTTATTGATTTGGTGAAAATGAAGGCTGTGTTGTGGTCTGGAGAGGAATTGGGTGCGAAGTTTAGCTATGAGGATATTCCAGCAGACCTTCTAGATTTAGCCACAGAATATAGGAATCAAATGATTGAAACCATAGTAGAACTGGATGATGATGCGATGGAGAAATATCTCGAGGGAGAGGAACCTGACGAGAAAACAATCAAGAGATTGATCAGAAAGGGCACCATATCTATCAGTTTTGTTCCCGTTCTTTGTGGCTCAGCATTTAAGAACAAGGGTGTGCAGCCTTTATTGGATGCTGTTGTGGATTATTTGCCTTCCCCTGTTGACTTGCCACCAATGAAGGGAACAGATGTTGATGATCCAGAAGTAACCCTAGAAAGGCGTGCTAGTGATGATGAACCATTTGCCGGACTTGCTTTTAAAATTATGACAGATCCCTTTGTAGGATCTCTTACATTTGTCCGAGTTTACTCTGGCGTCCTCACAGCTGGATCATATGTACTTAATTCCAACAAAGGGAAGAAAGAAAGAATTGGACGTTTATTACGAATGCATGCAATTAGTCGAGATGATGTCAAGATCGCTGTGACAGGGGATATAGTAGCACTTGCTGGTTTGAAGGATACAATAACAGGAGAGACTCTTTGTGATCCTGATAAGCCAGTTGTGCTGGAGAGAATGGACTTTCCTGAACCTGTTATTAAAGTCGCAATTGAACCGAAAACAAAAGCCGATGTGGACAAGATGTCTATGGGTCTTGTCAAGCTTGCTCAGGAAGATCCTTCTTTTCACTTCTCAAGAGATGAAGAGAGCAATCAAACTGTTATTGAAGGTATGGGGGAGTTGCATCTTGAAATCATTGTTGACCGTTTGAAGAGAGAATTCAAGGTCGAGGCTAATGTCGGTGCTCCTCAAGTAAACTACAGAGAAAGCATCTCAAAGATTGCAGAGACTAAGTATGTGCACAAGAAACAATCAGGTGGTCAAGGTCAGTTTGCAGATATAACTGTAAGATTTGAACCTCTGGAACCTGGCAGTGGCTATGAGTTCAAGAGTGAGATTAAGGGTGGAGTAGTGCCCAAAGAGTATATTCCAGGTGTTATGAAGGGATTGGAAGAATGTATGAGCAATGGTATTCTAGCAGGCTATCCTGTTGTCGATGTGCGGGCTGTCCTTACAAATGGATCCTATCATGAGGTAGACTCCAGTGCACTAGCATTCCAGCTTGCAGCTCGTGGTGCTTTCAGGGAGGGCATCAGAATGTCAGGTCCAAAGTTGCTAGAACCTATAATGAAGGTAGAAGTTGTAACACCTGAGGAGCATCTAGGGGATGTTATTGGTGATATTAATTCAAGGCGTGGTCAGATCAACACTTTTGCTGACAAGCCAGGAGGACTGAAGGTGATTGATGCTTTGGTGCCACTGGCAGAGATGTTTCAATACGTGAGTACACTCCGTAGTATGACCAAAGGCCGTGCATCTTATACTATGCAACTTGCTAAGTTTGATGTTGTACCTCAGCATATACAAAACCAACTTTCTTCAAAGGTGCAAGAGGTGGCTGCTTGAAAATTCGTAAAATTTCTATGAATTAGTATTAATTGGCTATCCATGCCAAACCTGTACTTTGGTTTCTTCTTCACATACACATCACAAAGTACTGTACTCTTACCTATTTGGATTGATTCATTGGTAAATTGAACCAAAAGGCAAGCTCAATCTTATCTTTGCATCAGTGTTTGTGATGTAAATGAAAACCAATGTTTCAGAATTTGCTCAGCAAAAAATTTACAGTATTTTTTGATATCCTTTCGTTCCATGTATTGCTATACCTGACAGAGGAAGCAATAGTTATTCCAATTTCCTATTCTGTAATAGCCAACAAGACTGGCTCAAGATAAGATACAAGTAACAATAATTATCTTTCCAACACTCAGCTTTTTGTAGTGTGATGCAAAATAAGGATATTTCTTGTTATCTGGAACAGTGATAAGTTATGTTCTCC

Ace file of the UniGene sp_v3.0_unigene5507

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Translation elongation factor G, putative n=1 Tax=Ricinus communis RepID=B9RBP7_RICCO	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2	IPR004540	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G62750.1	ATSCO1, ATSCO1/CPEF-G, SCO1 Translation elongation factor EFG/EF2 protein chr1:23233622-23236321 REVERSE LENGTH=783	81%
RefSeq	Arabidopsis thaliana	NP_564801.1	elongation factor EF-G [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002304430.1	predicted protein [Populus trichocarpa]	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ4

Fln msg:

Fln protein: MAETLKVSPCFSYSSHNYIGRHKYSSRRSKEGISLNSFNGLKALAGFPLRSPSIQGFRANDLLLCKASDSTSTSVRGRTLIVSMAADGPSRDVPLSEYRNIGIMAHIDAGKTTTTERILYYTGKNYKIGEVHEGTATMDWMEQEQERGITITSAATTCAWNDHRINIIDTPGHVDFTLEVERALRVLDGSICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVLQIPIGAEERFQGLIDLVKMKAVLWSGEELGAKFSYEDIPADLLDLATEYRNQMIETIVELDDDAMEKYLEGEEPDEKTIKRLIRKGTISISFVPVLCGSAFKNKGVQPLLDAVVDYLPSPVDLPPMKGTDVDDPEVTLERRASDDEPFAGLAFKIMTDPFVGSLTFVRVYSGVLTAGSYVLNSNKGKKERIGRLLRMHAISRDDVKIAVTGDIVALAGLKDTITGETLCDPDKPVVLERMDFPEPVIKVAIEPKTKADVDKMSMGLVKLAQEDPSFHFSRDEESNQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKIAETKYVHKKQSGGQGQFADITVRFEPLEPGSGYEFKSEIKGGVVPKEYIPGVMKGLEECMSNGILAGYPVVDVRAVLTNGSYHEVDSSALAFQLAARGAFREGIRMSGPKLLEPIMKVEVVTPEEHLGDVIGDINSRRGQINTFADKPGGLKVIDALVPLAEMFQYVSTLRSMTKGRASYTMQLAKFDVVPQHIQNQLSSKVQEVAA*

Protein Length: 787

Fln nts: ATGGGGGCTCTCTCGAATGCACAACCCCTCGTATCAGGTTCGCGTGAACAAGGCAAAACGCACTTTCCTCCATTCATTTATCATCATACTAGCAAACTATATAATGACCGTCAATTCAGAGAGGCGTTTCAATTCAGTGCTGCCCCTTCCATGAAGGCCTGCACCAGTATGACGGTTTAAGCAATTTTGCAGAGTTTAGGGTTGTTAACTATAAACTCTATCG_-_ATGGCGGAAACTCTCAAGGTCTCACCGTGCTTCTCTTACAGTTCGCACAATTACATTGGCCGTCATAAGTATAGTAGCAGGAGGAGCAAGGAAGGGATTTCGCTGAATTCGTTTAATGGATTGAAGGCTTTAGCTGGTTTTCCTCTACGCTCACCATCAATCCAGGGTTTCAGAGCCAATGACTTGTTGCTTTGCAAGGCCTCTGATTCAACCTCCACCAGTGTCCGTGGAAGAACACTGATCGTTTCCATGGCTGCAGATGGACCATCACGGGACGTGCCACTGTCAGAATATAGAAATATTGGAATTATGGCCCACATAGATGCAGGGAAAACCACTACTACAGAAAGGATTCTTTACTATACAGGCAAAAACTATAAAATTGGGGAGGTTCACGAGGGAACAGCTACTATGGACTGGATGGAGCAGGAGCAAGAAAGAGGCATAACCATTACCTCTGCTGCAACTACATGTGCATGGAATGATCATCGTATAAACATTATTGATACTCCTGGACATGTGGACTTCACACTCGAAGTGGAACGTGCCCTTAGAGTTCTTGACGGTTCTATCTGTCTATTTGACAGTGTTGCTGGTGTTGAGCCACAATCAGAGACTGTATGGAGACAAGCAGATAGGTATGGTGTTCCCAGAATTTGTTTTGTTAACAAAATGGATCGACTTGGAGCAAACTTCTTCAGGACAAGAGACATGATAGTAACAAACCTAGGGGCAAAACCTCTTGTTCTGCAAATTCCCATTGGGGCAGAGGAACGTTTTCAGGGACTTATTGATTTGGTGAAAATGAAGGCTGTGTTGTGGTCTGGAGAGGAATTGGGTGCGAAGTTTAGCTATGAGGATATTCCAGCAGACCTTCTAGATTTAGCCACAGAATATAGGAATCAAATGATTGAAACCATAGTAGAACTGGATGATGATGCGATGGAGAAATATCTCGAGGGAGAGGAACCTGACGAGAAAACAATCAAGAGATTGATCAGAAAGGGCACCATATCTATCAGTTTTGTTCCCGTTCTTTGTGGCTCAGCATTTAAGAACAAGGGTGTGCAGCCTTTATTGGATGCTGTTGTGGATTATTTGCCTTCCCCTGTTGACTTGCCACCAATGAAGGGAACAGATGTTGATGATCCAGAAGTAACCCTAGAAAGGCGTGCTAGTGATGATGAACCATTTGCCGGACTTGCTTTTAAAATTATGACAGATCCCTTTGTAGGATCTCTTACATTTGTCCGAGTTTACTCTGGCGTCCTCACAGCTGGATCATATGTACTTAATTCCAACAAAGGGAAGAAAGAAAGAATTGGACGTTTATTACGAATGCATGCAATTAGTCGAGATGATGTCAAGATCGCTGTGACAGGGGATATAGTAGCACTTGCTGGTTTGAAGGATACAATAACAGGAGAGACTCTTTGTGATCCTGATAAGCCAGTTGTGCTGGAGAGAATGGACTTTCCTGAACCTGTTATTAAAGTCGCAATTGAACCGAAAACAAAAGCCGATGTGGACAAGATGTCTATGGGTCTTGTCAAGCTTGCTCAGGAAGATCCTTCTTTTCACTTCTCAAGAGATGAAGAGAGCAATCAAACTGTTATTGAAGGTATGGGGGAGTTGCATCTTGAAATCATTGTTGACCGTTTGAAGAGAGAATTCAAGGTCGAGGCTAATGTCGGTGCTCCTCAAGTAAACTACAGAGAAAGCATCTCAAAGATTGCAGAGACTAAGTATGTGCACAAGAAACAATCAGGTGGTCAAGGTCAGTTTGCAGATATAACTGTAAGATTTGAACCTCTGGAACCTGGCAGTGGCTATGAGTTCAAGAGTGAGATTAAGGGTGGAGTAGTGCCCAAAGAGTATATTCCAGGTGTTATGAAGGGATTGGAAGAATGTATGAGCAATGGTATTCTAGCAGGCTATCCTGTTGTCGATGTGCGGGCTGTCCTTACAAATGGATCCTATCATGAGGTAGACTCCAGTGCACTAGCATTCCAGCTTGCAGCTCGTGGTGCTTTCAGGGAGGGCATCAGAATGTCAGGTCCAAAGTTGCTAGAACCTATAATGAAGGTAGAAGTTGTAACACCTGAGGAGCATCTAGGGGATGTTATTGGTGATATTAATTCAAGGCGTGGTCAGATCAACACTTTTGCTGACAAGCCAGGAGGACTGAAGGTGATTGATGCTTTGGTGCCACTGGCAGAGATGTTTCAATACGTGAGTACACTCCGTAGTATGACCAAAGGCCGTGCATCTTATACTATGCAACTTGCTAAGTTTGATGTTGTACCTCAGCATATACAAAACCAACTTTCTTCAAAGGTGCAAGAGGTGGCTGCTTGA___AAATTCGTAAAATTTCTATGAATTAGTATTAATTGGCTATCCATGCCAAACCTGTACTTTGGTTTCTTCTTCACATACACATCACAAAGTACTGTACTCTTACCTATTTGGATTGATTCATTGGTAAATTGAACCAAAAGGCAAGCTCAATCTTATCTTTGCATCAGTGTTTGTGATGTAAATGAAAACCAATGTTTCAGAATTTGCTCAGCAAAAAATTTACAGTATTTTTTGATATCCTTTCGTTCCATGTATTGCTATACCTGACAGAGGAAGCAATAGTTATTCCAATTTCCTATTCTGTAATAGCCAACAAGACTGGCTCAAGATAAGATACAAGTAACAATAATTATCTTTCCAACACTCAGCTTTTTGTAGTGTGATGCAAAATAAGGATATTTCTTGTTATCTGGAACAGTGATAAGTTATGTTCTCC

Fln Alignment:

Contig5507___MAETLKVSPCFSYSSHNYIGRHKYSSRRSKEGISLNSFNGLKALAGFPLRSPSIQGFRANDLLLCKASDSTSTSVRGRTLIVSMAADGPSRDVPLSEYRNIGIMAHIDAGKTTTTERILYYTGKNYKIGEVHEGTATMDWMEQEQERGITITSAATTCAWNDHRINIIDTPGHVDFTLEVERALRVLDGSICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVLQIPIGAEERFQGLIDLVKMKAVLWSGEELGAKFSYEDIPADLLDLATEYRNQMIETIVELDDDAMEKYLEGEEPDEKTIKRLIRKGTISISFVPVLCGSAFKNKGVQPLLDAVVDYLPSPVDLPPMKGTDVDDPEVTLERRASDDEPFAGLAFKIMTDPFVGSLTFVRVYSGVLTAGSYVLNSNKGKKERIGRLLRMHAISRDDVKIAVTGDIVALAGLKDTITGETLCDPDKPVVLERMDFPEPVIKVAIEPKTKADVDKMSMGLVKLAQEDPSFHFSRDEESNQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKIAETKYVHKKQSGGQGQFADITVRFEPLEPGSGYEFKSEIKGGVVPKEYIPGVMKGLEECMSNGILAGYPVVDVRAVLTNGSYHEVDSSALAFQLAARGAFREGIRMSGPKLLEPIMKVEVVTPEEHLGDVIGDINSRRGQINTFADKPGGLKVIDALVPLAEMFQYVSTLRSMTKGRASYTMQLAKFDVVPQHIQNQLSSKVQEVAA
B8LKZ4______________MAEALKLSPCFSYSLHNYSSRRKYSSRRIKEGISLNSFNGLKALAGFPLRTPSIQGFIANDLLLRKASVSTSTSVRGRTPIVSMAADGPSREVPLSDYRNIGIMAHIDAGKTTTTERILFYTGKNYKIGEVHDGTATMDWMEQEQERGITITSAATTCAWNNHRINIIDTPGHVDFTLEVERALRVLDGSICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIITNLGAKPLVLQIPIGAEDRFQGLVDLVKMKSVLWSGEELGAKFSYEDIPADLLDLATEYRNQMIETIVELDDDAMEKYLEGVEPDEKTIKRLIRKGTISISFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLELPPMKGTDVDDPEVTLERLASDDEPFAGLAFKIMTDPFVGSLTFVRVYSGVLTAGSYVLNSNKGKKERIGRLLQMHAISRDDVKIAVTGDIVALAGLKDTITGESLCDPDNPIVLERMDFPEPVIKVAIEPKTKADVDKMSMGLVKLAQEDPSFHFSRDEESNQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKIAETKYVHKKQSGGQGQFADVTVRFEPLEAGSGYEFKSEIKGGVVPKEYIPGVMKGLEECMSNGILAGYPVVDVRAVLTSGSYHEVDSSALAFQLAARGAFREGIRKAGPRLLEPIMKVEVVTPEEHLGDVIGDINSRRGQINTFDDKPGGLKVIDALVPLAEMFQYVSTLRSMTKGRASYTMQVAMFDVVPQHIQNQLSSKVQEVAA

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
1384	75		25		0.996473
1385	75			25	0.996473
1545		20	80		0.995493
1547	80			20	0.995493
1597		16		83	0.994512
1630	14			85	0.993533
1631	14			85	0.993533
1649	14		85		0.993533
1650		14	85		0.993533
1652			85	14	0.993533
1653	85			14	0.993533
1709		87		12	0.992554
1710		87	12		0.992554
1747		12		87	0.992554
2018	87		12		0.992554
2032	14			85	0.993533
2033		14	85		0.993533
2035	85			14	0.993533
2036		85		14	0.993533
2045		83	16		0.994512
2174		16	83		0.994512
2177			83	16	0.994512
2347		75		25	0.996473
2385	83			16	0.994512
2386		80	20		0.995493
2387	80		20		0.995493
2437	80		20		0.995493
2455	80		20		0.995493
2539		25		75	0.996473
2554			33	66	0.997452
2566			33	66	0.997452
2590		25		75	0.996473
2604		75		25	0.996473
2668		83		16	0.994512
2677		20		80	0.995493
2681	80			20	0.995493
2682		80	20		0.995493
2747	14	85			0.993533
2750		85	14		0.993533
2757	14			85	0.993533
2758		14	85		0.993533
2760			85	14	0.993533
2787	80			20	0.995493
2816		80		20	0.995493
2830			64	35	1.0
2908		52		47	1.0
2945	87	12			0.992554
2948	83			16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1532	1544	AAGA AAGA AAGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain