SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5472

Length: 2743 nt

UniGene Fasta

>sp_v3.0_unigene5472
CGTCGTGACCTTGGCTGTCACTCAATCCAACCCTAGAAAGTCACGTCCTACTTGCTATCAAACAAAATTGAAACAATCTCATGGGGCAAATTGGAAGAGCTGCATATTGGGCTTCGGATTCCCGATTTCTGCGCAGGAGTCAGCCGAATATTCTGCGGAAAACACTTGCACTGTCGAAGTCAAGTGCTTCCCAGAGGTCAAATATGACGATCCCGACCCCTCCCATCGCGGAGAAAATGGATCATATCATGGAGATGTTTGGAGATGTTCGAAATGATCAATATTACTGGCTCAGAGACGACTCCAGATCGAACCCCAAAGTTCTTTCCCATCTACAGCAAGAAAACTTCTATACCAACGCAGTTATGGCTGATACAAGACAATTGCAAGAAGAGCTTTATAATGAGTTAAGAGGACGGATCCAGGAAGCTGATATGACTGTTCCTCTTCGCAAAGGAACTTATTTTTACTACGAAAAAACATTAGAGGGAAAGCAATACAAACAACACTGTAGACGGCTTATTGTTGGGGGTGAAGGGCCTGGGTCAGTTAATGAAGTAATGAAGACAGGACCTGATGAGCCTGTGGAGGAGATTTTATTTGATGAAAATGTGGAGGCTGAGAAACATGAGTATTATCAGATTGGAGCATTCAAGGTGAGCCCAAATCACAGGATGATTGCATATGCAGAGGACACTAAAGGTGATGAAATCTACACTGTTTATGTCATTGATGCACAAAACGGAGAATTGATTGGCAGTCCGTTAATGGGAATTACCGGTTCTTTGGAATGGGCTGACAGTGAGACACTTGTGTACATTGCTATGGATGATATACATCGACCCTTTAAGGTATGGAGGCACCATCTGGGTTCAGATCAGTCTGATGACACTTGCCTATATCATGAAAAGGATGAAGAATTCTTTTTAGAGCTTCATGAATCTGAAAGCAAAGAGTACCATTTTGTTGTATCTGGAAGTAAAACCACACAATTTGTCCTCTACCTAAATCTTTCTGATCCACGGAAGGAACTGAAATATTTAACTCAGCGCGTTGAGGGAGTTGACACAATAGTAAGCCATCGTGGAAACCACTTTTTTATCAAAAGGAGGAGCGAAGAGATCTTCAACTCTGAATTACTTGTTTGCCCCATAGATGATTTAACTGCCACAACTGTGCTACTTCCTCACAGACCAAGTATAAAATTGCAGGAGTTGCAGGCATTCAAGGATTATCTTGTTGTGTATGAGCGTGAAAATGGTTTGGTTAAAGTAACTATCTATCACCTGCCACCTGCAGGAGAACCTATTAAAAGCCTTTCCAGTGGTCAGACTATTCAATTTATTGATCCCATCTATTCAGTATCACAAGTGGAATCACAGTTCAATTCTCATATACTGAGATACGAGTATGGTTCACTGCATACACCTTCATCCATTTATGACTATGATATGAACATTGGGAAATCAGTTCTAAAGAAGGTTGAACCGGTTTTGGGAGGTTTTGACAAGGAGAAATATGAAGTTCTTCGAAAATGGGCTGTAGCTTCTGATGGAACACAAGTGCCAATTTCCATTGTTTATAGAAAAGATATGGTAAAACTAGATGGCACAGATCCTCTACTTCTTTACGGATATGGCTCATATGAGGTCTGCATTGAGCCTGATTTCAGAACAACACGGCTATCCTTGATTGATCGTGGCTTTGTATATGCAATCGCTCATATTAGAGGTGGCGGTGAGATGGGACGGAAGTGGTATGAAGATGGAAAGTTACTGAAGAAAAGGAACACTTTTACAGATTTTATTGCTTGTGCAGAATATTTATTAAAAAATCAATTTGGTTCAAAGGACAAAATCTGTATCGATGGAAGGAGTGCAGGAGGGCTTCTTATCGGTGCAGTGTTGAATATGAGACCGGATTTATTTAAAGCAGCCGTAGCGGGGGTGCCTTTTGTAGATGTCGTCACAACAATGCTAGACTCTAGCATCCCATTGACTACTGCTGAGTGGGAGGAATGGGGTGACCCACGAGAAGAGAAATTCTACTTTTACATGAAATCCTATTCTCCAGTCGACAATGTCCAATCACAGAACTATCCTAACATTTTAGTCACTGCAGGTCTCAATGACCCACGTGTCTTATACTCAGAGCCTGCCAAATATGTTGCTAAGTTAAGGGAAAAGAAGACTGACAATAATTTGTTGCTATTCAAATGTGATTTTGGGGCTGGGCATTCTTCAAAATCAGGACGGTTTGATATACTCGAAGAAGATGCATTCAGAATTGCTTTCGTTTTGAAATCATTAGATTTGATCTCATGTAGGGCTCAATAAATGATTGGGTTGATGGTCGAAGACCAACACCAATGGAAATGTACTGTTGCTTTAAAATTTTGAGTCAAAGATTGGCAAGGATATTCCTCCTTATCATGATACCCTTAGATGGAAATGGTCGTTTAGTGCGCATAACTTATCCTTGATTATTATATGTATTATTGCCTCATTAAATTTAGCAATAAGCTCGCCAAAGAATGTGTCGGCTAGTGTGTTAGTTAATGTTTTTTATTTTTCTTTTAAAATTCTCTTTCTACCTCCTTTTTCCATGTCTTTTGTTTCATGGTTGACTTCTTAACTCTAGATATTTTGTTGTATTAATTAATTATGCTTCAAGAGGTTCGACTTGAGCACAAATAAGTATCCTTCTAATCCATCCCTAGAACACATAATGTTGATTTATTTGT

Ace file of the UniGene sp_v3.0_unigene5472

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oligopeptidase B [Arabidopsis thaliana] gb\|AAD50051.1\|AC007980_16 Similar to oligopeptidases [Arabidopsis thaliana] gb\|AAL84967.1\| At1g50380/F14I3_27 [Arabidopsis thaliana] gb\|AEE32542.1\| oligopeptidase B [Arabidopsis thaliana]	-	-	0.0	62%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	65%
Sma3	Oligopeptidase B, putative	-	-	2.694e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oligopeptidase B.	EC:3.4.21.83	-	4.49e-08	-

Source	Gene names
Sma3	At1g50380; B1206D04.9; CHLREDRAFT_170526; F14I3.4; GSVIVT00002597001; GSVIVT00002598001; OPB; OSJNBa0069C14.32; Os06g0730600; Os09g0453700; OsI_24549; OsI_31621; OsJ_22744; PHYPADRAFT_108694; POPTRDRAFT_590402; POPTRDRAFT_718074; RCOM_0246170; RCOM_145420

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G50380.1	Prolyl oligopeptidase family protein chr1:18662480-18666185 FORWARD LENGTH=710	63%
RefSeq	Arabidopsis thaliana	NP_564567.1	oligopeptidase B [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002310359.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: I1NF29

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MGQIGRAAYWASDSRFLRRSQPNILRKTLALSKSSASQRSNMTIPTPPIAEKMDHIMEMFGDVRNDQYYWLRDDSRSNPKVLSHLQQENFYTNAVMADTRQLQEELYNELRGRIQEADMTVPLRKGTYFYYEKTLEGKQYKQHCRRLIVGGEGPGSVNEVMKTGPDEPVEEILFDENVEAEKHEYYQIGAFKVSPNHRMIAYAEDTKGDEIYTVYVIDAQNGELIGSPLMGITGSLEWADSETLVYIAMDDIHRPFKVWRHHLGSDQSDDTCLYHEKDEEFFLELHESESKEYHFVVSGSKTTQFVLYLNLSDPRKELKYLTQRVEGVDTIVSHRGNHFFIKRRSEEIFNSELLVCPIDDLTATTVLLPHRPSIKLQELQAFKDYLVVYERENGLVKVTIYHLPPAGEPIKSLSSGQTIQFIDPIYSVSQVESQFNSHILRYEYGSLHTPSSIYDYDMNIGKSVLKKVEPVLGGFDKEKYEVLRKWAVASDGTQVPISIVYRKDMVKLDGTDPLLLYGYGSYEVCIEPDFRTTRLSLIDRGFVYAIAHIRGGGEMGRKWYEDGKLLKKRNTFTDFIACAEYLLKNQFGSKDKICIDGRSAGGLLIGAVLNMRPDLFKAAVAGVPFVDVVTTMLDSSIPLTTAEWEEWGDPREEKFYFYMKSYSPVDNVQSQNYPNILVTAGLNDPRVLYSEPAKYVAKLREKKTDNNLLLFKCDFGAGHSSKSGRFDILEEDAFRIAFVLKSLDLISCRAQ*

Protein Length: 753

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCAACCCTAGAAAGTCACGTCCTACTTGCTATCAAACAAAATTGAAACAATCTC_-_ATGGGGCAAATTGGAAGAGCTGCATATTGGGCTTCGGATTCCCGATTTCTGCGCAGGAGTCAGCCGAATATTCTGCGGAAAACACTTGCACTGTCGAAGTCAAGTGCTTCCCAGAGGTCAAATATGACGATCCCGACCCCTCCCATCGCGGAGAAAATGGATCATATCATGGAGATGTTTGGAGATGTTCGAAATGATCAATATTACTGGCTCAGAGACGACTCCAGATCGAACCCCAAAGTTCTTTCCCATCTACAGCAAGAAAACTTCTATACCAACGCAGTTATGGCTGATACAAGACAATTGCAAGAAGAGCTTTATAATGAGTTAAGAGGACGGATCCAGGAAGCTGATATGACTGTTCCTCTTCGCAAAGGAACTTATTTTTACTACGAAAAAACATTAGAGGGAAAGCAATACAAACAACACTGTAGACGGCTTATTGTTGGGGGTGAAGGGCCTGGGTCAGTTAATGAAGTAATGAAGACAGGACCTGATGAGCCTGTGGAGGAGATTTTATTTGATGAAAATGTGGAGGCTGAGAAACATGAGTATTATCAGATTGGAGCATTCAAGGTGAGCCCAAATCACAGGATGATTGCATATGCAGAGGACACTAAAGGTGATGAAATCTACACTGTTTATGTCATTGATGCACAAAACGGAGAATTGATTGGCAGTCCGTTAATGGGAATTACCGGTTCTTTGGAATGGGCTGACAGTGAGACACTTGTGTACATTGCTATGGATGATATACATCGACCCTTTAAGGTATGGAGGCACCATCTGGGTTCAGATCAGTCTGATGACACTTGCCTATATCATGAAAAGGATGAAGAATTCTTTTTAGAGCTTCATGAATCTGAAAGCAAAGAGTACCATTTTGTTGTATCTGGAAGTAAAACCACACAATTTGTCCTCTACCTAAATCTTTCTGATCCACGGAAGGAACTGAAATATTTAACTCAGCGCGTTGAGGGAGTTGACACAATAGTAAGCCATCGTGGAAACCACTTTTTTATCAAAAGGAGGAGCGAAGAGATCTTCAACTCTGAATTACTTGTTTGCCCCATAGATGATTTAACTGCCACAACTGTGCTACTTCCTCACAGACCAAGTATAAAATTGCAGGAGTTGCAGGCATTCAAGGATTATCTTGTTGTGTATGAGCGTGAAAATGGTTTGGTTAAAGTAACTATCTATCACCTGCCACCTGCAGGAGAACCTATTAAAAGCCTTTCCAGTGGTCAGACTATTCAATTTATTGATCCCATCTATTCAGTATCACAAGTGGAATCACAGTTCAATTCTCATATACTGAGATACGAGTATGGTTCACTGCATACACCTTCATCCATTTATGACTATGATATGAACATTGGGAAATCAGTTCTAAAGAAGGTTGAACCGGTTTTGGGAGGTTTTGACAAGGAGAAATATGAAGTTCTTCGAAAATGGGCTGTAGCTTCTGATGGAACACAAGTGCCAATTTCCATTGTTTATAGAAAAGATATGGTAAAACTAGATGGCACAGATCCTCTACTTCTTTACGGATATGGCTCATATGAGGTCTGCATTGAGCCTGATTTCAGAACAACACGGCTATCCTTGATTGATCGTGGCTTTGTATATGCAATCGCTCATATTAGAGGTGGCGGTGAGATGGGACGGAAGTGGTATGAAGATGGAAAGTTACTGAAGAAAAGGAACACTTTTACAGATTTTATTGCTTGTGCAGAATATTTATTAAAAAATCAATTTGGTTCAAAGGACAAAATCTGTATCGATGGAAGGAGTGCAGGAGGGCTTCTTATCGGTGCAGTGTTGAATATGAGACCGGATTTATTTAAAGCAGCCGTAGCGGGGGTGCCTTTTGTAGATGTCGTCACAACAATGCTAGACTCTAGCATCCCATTGACTACTGCTGAGTGGGAGGAATGGGGTGACCCACGAGAAGAGAAATTCTACTTTTACATGAAATCCTATTCTCCAGTCGACAATGTCCAATCACAGAACTATCCTAACATTTTAGTCACTGCAGGTCTCAATGACCCACGTGTCTTATACTCAGAGCCTGCCAAATATGTTGCTAAGTTAAGGGAAAAGAAGACTGACAATAATTTGTTGCTATTCAAATGTGATTTTGGGGCTGGGCATTCTTCAAAATCAGGACGGTTTGATATACTCGAAGAAGATGCATTCAGAATTGCTTTCGTTTTGAAATCATTAGATTTGATCTCATGTAGGGCTCAATAAATGATTGGGTTGATGGTCGAAGACCAACACCAATGGAAATGTACTGTTGCTTTAAAATTTTGAGTCAAAGATTGGCAAGGATATTCCTCCTTATCATGATACCCTTAGATGGAAATGGTCGTTTAGTGCGCATAACTTATCCTTGATTATTATATGTATTATTGCCTCATTAAATTTAGCAATAAGCTCGCCAAAGAATGTGTCGGCTAGTGTGTTAGTTAATGTTTTTTATTTTTCTTTTAAAATTCTCTTTCTACCTCCTTTTTCCATGTCTTTTGTTTCATGGTTGACTTCTTAACTCTAGATATTTTGTTGTATTAATTAATTATGCTTCAAGAGGTTCGACTTGAGCACAAATAAGTATCCTTCTAATCCATCCCTAGAACACATAATGTTGATTTATTTGT

Fln Alignment:

Contig5472___KTLALSKSSASQRSNMTIPTPPIAEKMDHIMEMFGDVRNDQYYWLRDDSRSNPKVLSHLQQENFYTNAVMADTRQLQEELYNELRGRIQEADMTVPLRKGTYFYYEKTLEGKQYKQHCRRLIVGGEGPGSVNEVMKTGPDEPVEEILFDENVEAEKHEYYQIGAFKVSPNHRMIAYAEDTKGDEIYTVYVIDAQNGELIGSPLMGITGSLEWADSETLVYIAMDDIHRPFKVWRHHLGSDQSDDTCLYHEKDXXXXXXXXXXXXXXYHFVVSGSKTTQFVLYLNLSDPRKELKYLTQRVEGVDTIVSHRGNHFFIKRRSEEIFNSELLVCPIDDLTATTVLLPHRPSIKLQELQAFKDYLVVYERENGLVKVTIYHLPPAGEPIKSLSSGQTIQFIDPIYSVSQVESQFNSHILRYEYGSLHTPSSIYDYDMNIGKSVLKKVEPVLGGFDKEKYEVLRKWAVASDGTQVPISIVYRKDMVKLDGTDPLLLYGYGSYEVCIEPDFRTTRLSLIDRGFVYAIAHIRGGGEMGRKWYEDGKLLKKRNTFTDFIACAEYLLKNQFGSKDKICIDGRSAGGLLIGAVLNMRPDLFKAAVAGVPFVDVVTTMLDSSIPLTTAEWEEWGDPREEKFYFYMKSYSPVDNVQSQNYPNILVTAGLNDPRVLYSEPAKYVAKLREKKTDNNLLLFKCDFGAGHSSKSGRFDILEEDAFRIAFVLKSLDLIS
I1NF29______________RRLVASASPMNPSSQSQSPPPPVAKKVEHAMEMFGDVRIDNYYWLRDDSRTDPEVLSYLRQENAYTDSIMSGTKEFEDKLFAEIRGRIKEEDVSAPLRKGPYYYYKRTLEGKEYVQYCRRLISDNQKVPSVHDIMPTGPEAPPEHVILDVNVKAQHHLYYSIGAFKVSPNNKLVAYAEDTKGDEIYTIYVIDVETQATIGEPLVGVTSYLEWAGDNAFVYITMDEILRPDKAWFHVLGTEQSKDTCLYVEKDDMFSLDLQASESKKYLFVASESKNTRFNFYLDVSKPEEGLKVLTPRVDGIDTTVSHRGDHFFIKRRSDQFFNSEVVACAVNNTSSTTVLIPHRESVKIQEIQLFSDHLVAYERENGLPKIIVYHLPPIGEPLRSLESGQAVSFVDPVYSAESSDSEFSSSILRFSYSSLRTPSSVYDYDMKAGISVLKKIDSVLGGFDATRYVTERQWAPSSDGTLIPISIVYRKDLVKLDGSDPLLLYGYGSYEICIDPSFKSARLSLLDRGFIYAIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIACAEYLIEKKFCSKEKLCIEGRSAGGLLIGAVLNMRPDLFKAAVAGVPFVDVVTTMLDPTIPLTTSEWEEWGDPRKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVLYSEPAKFVAKLRDMKTDDNILLFKCELGAGHFSKSGRFEKLQEDAFTYAYIMKTLNMTS

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
790		25		75	0.996473
850		75	25		0.996473
868		80		20	0.995493
898			20	80	0.995493
964	12	87			0.992554
1037		20		80	0.995493
1369	90			10	0.90298
1374	90	10			0.90298
1379	10		90		0.90298
1403		88		11	0.923564
1412	11		88		0.923564
1413	88	11			0.923564
1424		88		11	0.923564
1436		11		88	0.923564
1464		11		88	0.923564
1491	87	12			0.992554
1688		71		28	1.0
1741		75		25	1.0
1750	10		90		0.90298
1751		10	90		0.90298
1752	10		90		0.90298
1753	60		30	10	1.0
1754		90		10	0.90298
1768	71		28		1.0
1782	28			71	1.0
1783		28	71		1.0
1785	71			28	1.0
1786			71	28	1.0
1852		80		20	0.995493
1898			16	83	0.994512
1943	16	83			0.994512
1946	83		16		0.994512
1983		88		11	0.923564
2000	88		11		0.923564
2440			85	15	1.0
2463	2	27	69		1.0
2533	13	81		4	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain