SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5460

Length: 1294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5460 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM43_MARPO	-	-	0.0	75%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	43%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	3.282e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.401e-08	-
Sma3	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	2.955e-06	-

Source	Gene names
Sma3	AT1G12460; AT1G34210; AT1G62950; AT1G71830; AT2G13790; AT2G13800; AT3G28040; AT3G49670; AT4G33430; AT5G01890; AT5G10290; AT5G62710; AT5G65700; At1g12460; At1g34210; At1g62950; At2g13780; At2g13790; At2g13800; At3g28040; At3g49670; At3g56370; At4g33430; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	endosome membrane	GO:0010008	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	defense response to oomycetes	GO:0002229	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56370.1	Leucine-rich repeat protein kinase family protein chr3:20899403-20902390 REVERSE LENGTH=964	63%
RefSeq	Arabidopsis thaliana	NP_191196.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002321093.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 36 aas, putative chimeric sequence, your sequence is shorter than subject: 242 - 626

Fln protein: NVQLLRRIKHPNLVNLQGYYWTPQLQLLIYDYIQSGSLYSRLHERSQTDPPLSWSSRFNIALGTARGLAHLHHSCRPPVIHYNIKSSNILLDENCNPKVADYGLAKLLPMLDRYILSSKIQSALGYMAPEFACQSLKINERCDVYGFGVLLLELVTGRRPVEYMEDDVVILCDNVRSLLDEGKALTCVDSSLSEYPEDEVIPVIKLGLICTSQVPSNRPSMSEVVHILELIRSPMESRETP*

Protein Length: 243

Fln nts: AATGTACAGCTATTGCGCAGAATCAAGCATCCAAATCTAGTGAATTTGCAAGGCTACTACTGGACACCACAATTACAGCTTCTTATATATGACTACATTCAAAGTGGAAGTTTGTATAGTCGACTTCATGAAAGATCCCAAACAGATCCCCCGTTAAGTTGGTCAAGCAGGTTTAATATTGCTTTGGGGACTGCAAGAGGGCTTGCACATCTTCACCATTCTTGCAGACCGCCAGTCATACACTACAACATAAAATCCAGCAATATTTTGCTGGATGAGAATTGCAACCCTAAAGTTGCAGATTATGGCCTTGCAAAGCTGCTTCCCATGCTTGATAGATACATTCTTAGTAGCAAAATACAGAGTGCATTAGGATATATGGCACCCGAATTTGCCTGTCAGAGCCTTAAGATTAATGAAAGATGTGATGTCTATGGATTTGGCGTGTTGCTGTTAGAACTTGTTACAGGCAGAAGGCCAGTTGAATACATGGAGGATGATGTTGTGATCTTATGTGACAATGTGCGGTCATTGCTAGATGAAGGGAAGGCACTGACTTGTGTGGATTCGAGTTTATCTGAATACCCAGAGGATGAGGTTATTCCTGTGATCAAGCTAGGATTGATTTGCACTTCACAAGTACCTTCAAACAGGCCATCCATGTCAGAGGTGGTACACATACTGGAGCTCATTAGATCACCGATGGAAAGTAGAGAGACTCCTTGA___AGGGGAGTCGAAGCTTTCCTTCAAAATAAAGTTTTCTCAAATTATGCTATAGGGGAATGTGAGCGACACTGTTGAAGAGGAGTTCAGTTATTCAACCCTCAATCTGAAAGCGTCCTGACATGAGTTTTGAATCTTTTTGCTTTACTGAACTTTTGTTTATGCTTGCAGCCTTCAAAAGACTTGGGAACCAATTTTAAAACTCGATTGAGGGAGAAAGTCCTTTTCACCAGTGCCAACTTCCATTCTTCTTCTCTGGGAAACCTTGAGATAAATTCCCTGCATTTATTTGATTATTATCATTGGCAGGTTCTACCATTGTGCCAGATGATATGATATCATATATAAATTTTCATTGAATGTTTCCAATAGAATCCTGTTATAAACAGAGGGCTTTTTTTAGAATTCTGTTTATAACTGTGTCTGTTGGAATATATAGCATCTTTTTCTCTGTTTTGTTTTTACCCTGTGGTAAAATGGTATATAGTGAGGACTACATTTCCATGTAAGAACAGACTATTATTACAGGTATTCTCAATATCAAGATTCGGCATGCCACGCTGTTTTTTTG

Fln Alignment:

Contig5460___VQLLRRIKHPNLVNLQGYYWTPQLQLLIYDYIQSGSLYSRLHERSQTDPPLSWSSRFNIALGTARGLAHLHHSCRPPVIHYNIKSSNILLDENCNPKVADYGLAKLLPMLDRYILSSKIQSALGYMAPEFACQSLKINERCDVYGFGVLLLELVTGRRPVE---YMEDDVVILCDNVRSLLDEGKALTCVDSSL-SEYPEDEVIPVIKLGLICTSQVPSNRPSMSEVVHILE
D5FY57______________VEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHV-TTAVRGTIGHIAPEYLSTG-KSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLIDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1009	12		87		0.992554
1020		87		12	0.992554
1212			90	10	0.90298
1213	90			10	0.90298
1230	14			85	0.993533
1234			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain