SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5448

Length: 2679 nt

UniGene Fasta

>sp_v3.0_unigene5448
ATGACTGTAGATTGCGAGACGTTACAGTTTACTTAGGATGACCCCGATGATTTCTCATCTTTGCTTCAATTCAGTGTCGCAGAGGGTGCTCTTCCATGTCTGAAGAAAAATGTGAATGAGACTCTGCAATACAAAATTTTCTCGCATTGTGGACGCGTGGTAAGTGCAGGAAACGAGTGAAGGGGAGAAGGGGGGTTTTTGCCTGTAAGAAAGGATCAGAGAGAGCAGGCATCCACTAGCCATGGAAAACATGAGGAAGAAGCTGGGGCCACTGTTCAACTCCGGGCAGAGTTTCCGTCCTGACATCTCTGTTGATTCCTGTACTTCATATAAGGTAACAGCGGGTGGAACTTTACACTTGCTGAGTAATTCGTGTGGAGAATATAATATTAATGAACTTGGCTTACAAAAGCGCACCTCAGCAGGTATTGATGAATATGATACGAATGAGAAAACATATCAGTGTGCTTCGCATGAGATGTGCATATTTGGTGTCATTGGACGTGGTGCAAGCAGTGTTGTCCAAAAGGCTATTCATATACCAACACATCGGATTTTAGCACTGAAGAAAATAAATACCTTTGAGAAGGAAAAACGTCACCAGCTATTAAATGAGATTCGAACACTATGTGAGGCACCACATGTGAAAGGCTTAGTGGAGTTTCATGGGGCTTTTTACACTCCTGCATCTGGACAAATCAGCATTGCTTTAGAATACATGGATGGAGGCTCACTTAGAGATCTTGTGCAATCAAAGAAGTGTATTCCTGAGCCAATTCTTTCTGTTATTACACATGAAATTTTACATGGATTAAATTTTTTACATCACGTGAGGCATCTGGTGCATAGAGACATAAAACCTGCTAATCTGCTTATAAACCTTAATGGAGAGCCAAAAATTACAGATTTTGGAATTAGTGTTGGTTTGGAGAACACTGTTGCGATGTGTGGCACATTTGTTGGGACCGTCACATACATGTCACCAGAGAGAATTGGTAATGAATATTATTCATTCCCAGCAGATATCTGGAGCCTAGGACTTTCCATTTTTGAATGTGGTACAGGAGAGTTCCCATACAATGCAAGCAAGGGCCCTGTGAATCTCATGCTTCAGGTCATATATGATCCATCTCCCTCACCTTCACGAGATTGCTTTTCAGAGGAGTTTTGCTCATTCGTTGATGTCTGTCTACAGAAGGATCCAACTGCAAGGCCTACAGCAGAACAGCTCTTATCACATCCTTTTATTAAAAAATATGAAAATGCAGGAGTTGATCTGTCAGCATATGTACAAAGTATTTTTGATCCTATAGACCGTCTAAAGGATTTAGCTGATATGCTTACTGTACATTATTACATGCTTTTTGATGGCCCCGATGAGCAGTGGCATCACATGAAAACTATGTACCGTGAGAATTCTGCTTTCAGCTATGCAAACCAGGTTGCAGTTGGAGCAAATGATATCTTCAATACTCTATCACGAATACATAGCATGTTGGTTGGTGATAGCCCTGATGAAAGGCTTGTTCATGTAGTTGAAAATCTTCAATGCTGTGTATATGGGCAACATGGTGTTGTGATCCGTGTATCTGGATCATTTGTTCTTGGAGGCCAGTTTATACCAACTGGGGGTGGGGTGCAAGTTGAGGGGGTTTCACAAGGACCTTTGTTGGACATAGCATCACGAAGAATGGGGACCTTTAATGAGCAATTCATCATGGAACCAGGAGAGCAGATTGGATGTTATTATATATATAAGCAGGAGCTGTCCATCCAACAGTGAAAAAAATGCATACAACCAAATTGTCTTTTTGCTTCCGTACAGTCTATATTCTCTGGTACAGGAGCGCTGTAAAAATAGCAGCCCAAGAACAGGAAGTTTGTGAAGGGAGTTTCCATCATTGCAGTTGTAGCAGGGGTTGGAAGATTCCTTGATGTTATAGCTTGTATGCATCAGGTATCACCATCAAAGAAAACCCACATCTGCCTTCAGATTGATTGACTAGGAAGTAAACAGGCATGGGAGACAACTTACTGGAAGCAGATGAACAGCTAATATTTCAGTGAAGATTTGCTCAAGAGATTATTAGAGACTGATGAACTAATAACTCCAAACAGATCAATACATCACTGAAGTTTGTGTTGCAACCCTCATGAAGATGGAGAATAGCCTATGCATATTTTGATGCATCTATAGTTTAGTAAATTTGGAATCTGTAGCTGTTGTGATGGTGTTCTGACTAGAGTAGCTTTATGCAGCCTTGAGATAATTTTAAATGGCTGAGAGTTTTGTTGATAACGAGGAAGAGTAATACTGTTGCCTCAATGACTGAATAAGGTAAAGAATTGTGCTAGTTGGACAAAAAGGTTTAGTAGATTAAGGGCAAACACTTGCAGTTGTCATGGTATGGTCCTTCTTAAAAAGGTTGTTATCATGTCAGATGCCATTACTCGATGCTTTCTAATGTTTGGTTAGTATAAAGATCTCATAACTAGGCACGGTAACAAAGACAGTGGAAACGAAAAATACACATTATTTATTGTCATTGCAAGATTGATAAAATCAATATTGGACTAAATCAGCATACTCACTTGTGAAGTTTCCACTTTGGAGAGTAGGTTCTGTTTTGTACTGTGTTGAAAAAATTGTAAATATTAAGCATATTATACATCATGATT

Ace file of the UniGene sp_v3.0_unigene5448

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitogen-activated protein kinase kinase [Suaeda salsa]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Mitogen-activated protein kinase kinase 1	-	-	2.77e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Mitogen-activated protein kinase kinase.	EC:2.7.12.2	-	3.487e-21	-

Source	Gene names
Sma3	AT4G29810; ATMKK3; At1g51660; At1g73500; At1g73500/T9L24_8; At3g21220; At4g26070; At4g29810; At5g40440; At5g40440/MPO12_150; CHLREDRAFT_155835; F19C24.26; F20B18.180; F27B13.50; GSVIVT00016514001; GSVIVT00016645001; GSVIVT00017883001; GSVIVT00020675001; L

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	MAP kinase kinase activity	GO:0004708	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	MAPK cascade	GO:0000165	Biological Process	-
Sma3	response to molecule of bacterial origin	GO:0002237	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	cold acclimation	GO:0009631	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	induced systemic resistance, jasmonic acid mediated signaling pathway	GO:0009864	Biological Process	-
Sma3	induced systemic resistance, ethylene mediated signaling pathway	GO:0009866	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G40440.1	ATMKK3, MKK3 mitogen-activated protein kinase kinase 3 chr5:16182149-16184513 FORWARD LENGTH=520	65%
RefSeq	Arabidopsis thaliana	NP_198860.1	mitogen-activated protein kinase kinase 3 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002298538.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P4

Fln msg: your sequence is longer than subject: 514 - 349

Fln protein: MENMRKKLGPLFNSGQSFRPDISVDSCTSYKVTAGGTLHLLSNSCGEYNINELGLQKRTSAGIDEYDTNEKTYQCASHEMCIFGVIGRGASSVVQKAIHIPTHRILALKKINTFEKEKRHQLLNEIRTLCEAPHVKGLVEFHGAFYTPASGQISIALEYMDGGSLRDLVQSKKCIPEPILSVITHEILHGLNFLHHVRHLVHRDIKPANLLINLNGEPKITDFGISVGLENTVAMCGTFVGTVTYMSPERIGNEYYSFPADIWSLGLSIFECGTGEFPYNASKGPVNLMLQVIYDPSPSPSRDCFSEEFCSFVDVCLQKDPTARPTAEQLLSHPFIKKYENAGVDLSAYVQSIFDPIDRLKDLADMLTVHYYMLFDGPDEQWHHMKTMYRENSAFSYANQVAVGANDIFNTLSRIHSMLVGDSPDERLVHVVENLQCCVYGQHGVVIRVSGSFVLGGQFIPTGGGVQVEGVSQGPLLDIASRRMGTFNEQFIMEPGEQIGCYYIYKQELSIQQ*

Protein Length: 515

Fln nts: ATGACTGTAGATTGCGAGACGTTACAGTTTACTTAGGATGACCCCGATGATTTCTCATCTTTGCTTCAATTCAGTGTCGCAGAGGGTGCTCTTCCATGTCTGAAGAAAAATGTGAATGAGACTCTGCAATACAAAATTTTCTCGCATTGTGGACGCGTGGTAAGTGCAGGAAACGAGTGAAGGGGAGAAGGGGGGTTTTTGCCTGTAAGAAAGGATCAGAGAGAGCAGGCATCCACTAGCC_-_ATGGAAAACATGAGGAAGAAGCTGGGGCCACTGTTCAACTCCGGGCAGAGTTTCCGTCCTGACATCTCTGTTGATTCCTGTACTTCATATAAGGTAACAGCGGGTGGAACTTTACACTTGCTGAGTAATTCGTGTGGAGAATATAATATTAATGAACTTGGCTTACAAAAGCGCACCTCAGCAGGTATTGATGAATATGATACGAATGAGAAAACATATCAGTGTGCTTCGCATGAGATGTGCATATTTGGTGTCATTGGACGTGGTGCAAGCAGTGTTGTCCAAAAGGCTATTCATATACCAACACATCGGATTTTAGCACTGAAGAAAATAAATACCTTTGAGAAGGAAAAACGTCACCAGCTATTAAATGAGATTCGAACACTATGTGAGGCACCACATGTGAAAGGCTTAGTGGAGTTTCATGGGGCTTTTTACACTCCTGCATCTGGACAAATCAGCATTGCTTTAGAATACATGGATGGAGGCTCACTTAGAGATCTTGTGCAATCAAAGAAGTGTATTCCTGAGCCAATTCTTTCTGTTATTACACATGAAATTTTACATGGATTAAATTTTTTACATCACGTGAGGCATCTGGTGCATAGAGACATAAAACCTGCTAATCTGCTTATAAACCTTAATGGAGAGCCAAAAATTACAGATTTTGGAATTAGTGTTGGTTTGGAGAACACTGTTGCGATGTGTGGCACATTTGTTGGGACCGTCACATACATGTCACCAGAGAGAATTGGTAATGAATATTATTCATTCCCAGCAGATATCTGGAGCCTAGGACTTTCCATTTTTGAATGTGGTACAGGAGAGTTCCCATACAATGCAAGCAAGGGCCCTGTGAATCTCATGCTTCAGGTCATATATGATCCATCTCCCTCACCTTCACGAGATTGCTTTTCAGAGGAGTTTTGCTCATTCGTTGATGTCTGTCTACAGAAGGATCCAACTGCAAGGCCTACAGCAGAACAGCTCTTATCACATCCTTTTATTAAAAAATATGAAAATGCAGGAGTTGATCTGTCAGCATATGTACAAAGTATTTTTGATCCTATAGACCGTCTAAAGGATTTAGCTGATATGCTTACTGTACATTATTACATGCTTTTTGATGGCCCCGATGAGCAGTGGCATCACATGAAAACTATGTACCGTGAGAATTCTGCTTTCAGCTATGCAAACCAGGTTGCAGTTGGAGCAAATGATATCTTCAATACTCTATCACGAATACATAGCATGTTGGTTGGTGATAGCCCTGATGAAAGGCTTGTTCATGTAGTTGAAAATCTTCAATGCTGTGTATATGGGCAACATGGTGTTGTGATCCGTGTATCTGGATCATTTGTTCTTGGAGGCCAGTTTATACCAACTGGGGGTGGGGTGCAAGTTGAGGGGGTTTCACAAGGACCTTTGTTGGACATAGCATCACGAAGAATGGGGACCTTTAATGAGCAATTCATCATGGAACCAGGAGAGCAGATTGGATGTTATTATATATATAAGCAGGAGCTGTCCATCCAACAGTGA___AAAAAATGCATACAACCAAATTGTCTTTTTGCTTCCGTACAGTCTATATTCTCTGGTACAGGAGCGCTGTAAAAATAGCAGCCCAAGAACAGGAAGTTTGTGAAGGGAGTTTCCATCATTGCAGTTGTAGCAGGGGTTGGAAGATTCCTTGATGTTATAGCTTGTATGCATCAGGTATCACCATCAAAGAAAACCCACATCTGCCTTCAGATTGATTGACTAGGAAGTAAACAGGCATGGGAGACAACTTACTGGAAGCAGATGAACAGCTAATATTTCAGTGAAGATTTGCTCAAGAGATTATTAGAGACTGATGAACTAATAACTCCAAACAGATCAATACATCACTGAAGTTTGTGTTGCAACCCTCATGAAGATGGAGAATAGCCTATGCATATTTTGATGCATCTATAGTTTAGTAAATTTGGAATCTGTAGCTGTTGTGATGGTGTTCTGACTAGAGTAGCTTTATGCAGCCTTGAGATAATTTTAAATGGCTGAGAGTTTTGTTGATAACGAGGAAGAGTAATACTGTTGCCTCAATGACTGAATAAGGTAAAGAATTGTGCTAGTTGGACAAAAAGGTTTAGTAGATTAAGGGCAAACACTTGCAGTTGTCATGGTATGGTCCTTCTTAAAAAGGTTGTTATCATGTCAGATGCCATTACTCGATGCTTTCTAATGTTTGGTTAGTATAAAGATCTCATAACTAGGCACGGTAACAAAGACAGTGGAAACGAAAAATACACATTATTTATTGTCATTGCAAGATTGATAAAATCAATATTGGACTAAATCAGCATACTCACTTGTGAAGTTTCCACTTTGGAGAGTAGGTTCTGTTTTGTACTGTGTTGAAAAAATTGTAAATATTAAGCATATTATACATCATGATT

Fln Alignment:

Contig5448___VIGRGASSVVQKAIHIPTHRILALKKIN-TFEKEKRHQLLNEIRTLCEAPHVKGLVEFHGAFYTPASGQISIALEYMDGGSLRDLVQSKKCIPEPILSVITHEILHGLNFLHHVRHLVHRDIKPANLLINLNGEPKITDFGISVGLENTVAMCGTFVGTVTYMSPERIGNEYYSFPADIWSLGLSIFECGTGEFPY---NASKGPVN---LMLQVIYDPSPSPSRDCFSEEFCSFVDVCLQKDPTARPTAEQLLSHPFIKKYENAGVDLSAYVQSIFDPI
D5A9P4______________VIGKGSGGVVQLVRHKWTGQFFALKAIQMSIQESVRKQIVQELK-INQASQCPNVVVCYHAFYN--NGVISIVLEYMDCGSLADVIKRVKTFTEPYLAVICKQVLKGLIYLHRDRHIIHRDIKPSNLLVNHKGEVKITDFGVSATLANSMGQRDTFVGTYNYMSPERISGSTYGFSSDIWSLGLVVLECATGRFTYLPPGQEEGWLNFYELLETIVEQPAPCASPDQFSPEFCSFISACVQKDPKDRMSATDLLNHPFIKRYEDQNVDLAALLSSLSSPV

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1401	11		88		0.923564
1402	88	11			0.923564
1404	88			11	0.923564
1405	88			11	0.923564
1446	11		88		0.923564
1447		11	88		0.923564
1467		11		88	0.923564
1470		88		11	0.923564
1603		11		88	0.923564
1620	12		87		0.992554
1762	83		16		0.994512
1763	83		16		0.994512
1817	16			83	0.994512
1819		16	83		0.994512
1820	16	83			0.994512
1943	14			85	0.993533
1945	85		14		0.993533
1946			14	85	0.993533
1947	85		14		0.993533
1995		14		85	0.993533
2327		66	33		1.0
2416			62	37	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain