SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5445

Length: 1456 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5445 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana] gb\|AEE79469.1\| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana]	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%
Sma3	Putative uncharacterized protein F27K19_220	-	-	4.703e-10	-

Source	Gene names
Sma3	At3g56040/F27K19_220; F27K19_220; GSVIVT00029334001; LPB1; MICPUCDRAFT_15354; MICPUN_108207; OJ1058_C01.8; OSTLU_88889; Os05g0468600; OsI_20285; OsJ_18869; Ot13g00330; POPTRDRAFT_1091764; RCOM_0839610; VITISV_024684;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	UTP--glucose-1-phosphate uridylyltransferase	IPR002618	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56040.1	UGP3 UDP-glucose pyrophosphorylase 3 chr3:20792689-20797482 REVERSE LENGTH=883	59%
RefSeq	Arabidopsis thaliana	NP_567031.1	UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002315147.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T4L5

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 485 - 860

Fln protein: KSSQECFYYLLDMIEKWDKSGDSAKDQRYLDLRPGNGDTGPSKAGNDEISLSFGRLLLMLEELETFYDCIGGIVGYQVAILELILASKNEVRSPSGQFHQEFSDVDSIKEFYVPSGPDLAKDKEYAAQAAIWGIEGLPTMGEIYPLGGSGDRLGLVDKETGHCLPVAMLPFCGRTLLEGLVRDLQAREFLYYKIYGKQIVTPVAIMTSAAKDNHKHITALCERHKWFGRGRTSFKLFEQPLVPTVGAEDGHWVKSEPFKLVLKPGGHGVIWKLARDKGIFDWFYSHGRKAATVRQISNPVAATDVTLLALAGIGLHYGKTLGFASCQRNVGATEGVNVLVERSTAYGYWEYGITCIEYTEFDKLGIADAPILPGSMQAQYPANTNVLYVDLPAVERIGSSKTVASLPGMILNLRKPIIYEDYLGVKHSLYASRLECTMQNVADSLLTSFPHRCYSNVQENLDTFIVYNERRKVTSSAKKKGKTQT

Protein Length: 486

Fln nts: CAAGTCCTCTCAAGAATGCTTTTATTATTTGCTCGACATGATCGAGAAGTGGGATAAGTCTGGCGATTCTGCTAAAGACCAGCGTTATTTAGATTTAAGACCTGGTAACGGTGATACCGGACCAAGTAAGGCTGGGAACGATGAAATCTCCCTCTCTTTTGGAAGACTTCTTTTGATGCTTGAGGAATTGGAAACGTTTTATGACTGCATTGGAGGAATTGTCGGGTATCAAGTTGCAATTTTGGAACTTATTTTAGCTTCAAAAAACGAAGTGCGTTCTCCAAGTGGTCAATTCCATCAAGAATTTTCTGATGTAGACTCAATAAAGGAATTTTATGTTCCTAGTGGCCCAGATCTTGCAAAGGACAAAGAGTATGCGGCTCAAGCTGCAATTTGGGGCATTGAGGGATTACCAACAATGGGAGAAATTTATCCTCTTGGAGGTTCTGGAGATAGGCTTGGATTGGTTGACAAAGAAACAGGTCATTGTCTTCCTGTGGCAATGCTTCCTTTTTGTGGTCGAACTTTGTTGGAAGGACTTGTTAGAGATTTGCAGGCTAGGGAATTTCTTTACTACAAAATATATGGAAAACAGATTGTCACCCCTGTTGCGATCATGACAAGTGCAGCAAAAGACAACCACAAACATATCACAGCACTCTGTGAAAGACATAAATGGTTCGGGCGAGGAAGGACGAGTTTTAAGCTTTTTGAACAGCCATTGGTACCAACTGTTGGTGCAGAAGATGGGCATTGGGTGAAAAGTGAGCCTTTTAAACTTGTACTTAAACCAGGAGGCCATGGTGTTATATGGAAGCTTGCTAGAGATAAAGGCATTTTTGATTGGTTTTATAGTCATGGTCGCAAAGCTGCAACTGTTCGACAAATCAGTAATCCAGTTGCTGCTACAGATGTGACTCTTCTTGCATTGGCTGGAATAGGTCTTCACTATGGAAAGACACTTGGTTTTGCTTCATGTCAGCGTAATGTGGGTGCAACAGAGGGGGTGAATGTCTTAGTGGAACGTAGTACAGCTTATGGATATTGGGAATATGGTATAACCTGCATTGAGTATACGGAGTTTGACAAATTGGGTATTGCAGATGCTCCCATTTTGCCTGGAAGCATGCAGGCACAATATCCAGCCAACACCAATGTTCTTTATGTTGACTTGCCTGCTGTTGAACGGATTGGATCAAGCAAAACTGTGGCATCTTTACCAGGCATGATTTTGAACCTGAGGAAGCCTATTATCTATGAGGACTATCTTGGTGTGAAGCATAGTTTATATGCTAGCAGACTTGAATGTACGATGCAGAATGTGGCTGATTCACTTTTGACAAGTTTCCCTCATAGGTGTTATTCCAATGTTCAAGAAAACTTGGATACCTTTATTGTGTACAATGAAAGGCGCAAAGTAACCTCATCTGCAAAAAAGAAAGGAAAGACACAGACA

Fln Alignment:

Contig5445___FYYLLDMIEKWDKSGDSAKDQRYLDLRPGNGDTGPSKAGNDEISLSFGRLLLMLEELETFYDCIGGIVGYQVAILELILASKNEVRSPSGQFHQEFSDVDSIKEFYVPSGPDLAKDKEYAAQAAIWGIEGLPTMGEIYPLGGSGDRLGLVDKETGHCLPVAMLPFCGRTLLEGLVRDLQAREFLYYKIYGKQIVTPVAIMTSAAKDNHKHITALCERHKWFGRGRTSFKLFEQPLVPTVGAEDGHWVKSEPFKLVLKPGGHGVIWKLARDKGIFDWFYSHGRKAATVRQISNPXXXXXXXXXXXAGIGLHYGKTLGFASCQRNVGATEGVNVLVERSTAYGYWEYGITCIEYTEFDKLGIADAPILPGSMQAQYPANTNVLYVDLPAVERIGSSKTVASLPGMILNLRKPIIYEDYLGVKHSLYASRLECTMQNVADSLLTSFPHRCYSNVQENLDTFIVYNERRKVTSSAKKKGK
D7T4L5______________FYGLVEMIEKWEVSGAEGLGKK-------NG------VADEEIG-ALKKLLKTLREIEQFYDCIGGIIGYQIVVLELLTQSLSKKHINWIQHINEAMQCQLL-ELHSPCGLDLSKNTAYASQAALWGVEGLPELGEIYPLGGSADRLGLVDPDTGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKIYGKQCITPVAIMTSAAKNNHEHITSLCERHQWFGRGQSSFQLFEQPLVPAVSAEDGEWLVTKPFTPVCKPGGHGVIWKLAYDKGIFQWFYDHGRKGATVRQVSNVVAATDLTLLALAGIGLRHRKKMGFASCKRNSGATEGINVLIEKNLD-GKWEYGLSCIEYTEFDKFGITDGLLSSNSLQAGFPANTNILYVDLPSAELVGSSNDEKSLPGMVLNIKKPIVYEDYFGFQHSVSGGRLECTMQNIADNFFNTYASRCYKGVEDVLDTFIVYNERRRVTSSAKKKRK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
193	21		78		1.0
195		78	21		1.0
538	87		12		0.992554
549		11		88	0.923564
551	11	11	77		0.968132
552		88	11		0.923564
554			87	12	0.992554
697		85	14		0.993533
698	85			14	0.993533
743	14			85	0.993533
746	80			20	0.995493
747	80			20	0.995493
841	20		80		0.995493
844		80		20	0.995493
1168	83			16	0.994512
1420	20		80		0.995493
1421		20		80	0.995493
1422	20	80			0.995493
1423			80	20	0.995493
1424	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain