SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5440

Length: 2136 nt

UniGene Fasta

>sp_v3.0_unigene5440
ATGGGGCTGTCAAAGAAAGCATAGAATTTTCTCCTCATTCTCGCACACGTTATACGTGGAAGTTGGAAGGGCTGATTTCTTCCCCTCATTCTTCCCCACGTTACATATGGTATCTGGAAGGGCTGATCTATTTATAATCTTCGCAAGCAAAATACATTAAAGGATTCGAAATCTCTGTTTGTAATGCATCGCCTTCCCCACATCGACCTCCGTTACGCTGTTGTGATAATCTGCTGGGATATAACACGGGGGCCGAATTATAGTTTTCAGGGTTTCAGAAGAATTTTGGCTCTCAGGGTTTGATAAGGAATTTCATCTGTCAGGGTTTGATAAAGAAACTCTGCTATTAGGGTTCCACGAAATTGGAGAAATTTTGCAGAATTTAAAGTTGCAGTGCAATAGTAGGGACTGTCTTTTTCATGTTTTTATGAATTTTTTGTTGGAAGAAGTTTACGAGGATGTTGAACAATGAGGAAGGAGTGAGCGGGAGCTTAAACAGGATAAGCCTGACCCAACTGGGTTGGAGGAGGGGTGCCGAAGATCCAGTGGAGGAGGAAGAAGCTCCCACATACCTGAATACCACCACCAATTGCCCTTTCTTGGTCATATCAACTGATAAGCTCTCTGCACAGTATAACGGTGAAGCGCGGCATGGCTATGATGTCGGAGCAATACAGGGCAACTGCCCCGCTCCGGTCCGGAAGCTTCTTTATTACTTTGAGATTAATGTCAAGGACAAGGGACAGAAAGGCAACGTTTCTATTGGCTTCACCGATCAGCATTTCAAGATGACCAGACAACCCGGGTGGGAACCGAATAGCTTCGGGTATCACGGAGATGATGGATATCTGTACCATGGAAATGGAAAGGGTGGTGAACCTTTTGGTCCCAAATTTACAACTGGAGATACAGTGGGAGCTGGCATAAATTATGCTTCACAGACTGTGTTTTTTACAAAGAATGGAAAGCTTGTCGGATCAACTCCAAAGGAAGTTAAGGGGCCCTTATATCCTACAATTGGTCTTCATAGCCCAAATGAGAAGACGGATGTGAATTTTGGACAACGGCCATTTGTGTTTGATATTGAGCAATTGGCGCAAGAGGAGAGAGAAAAACGCCAAACAATAATAGAAAAAGTATCGTTGCCCCTTAGTGTCAGCCATTGGATTGTTCGTTCTTACCTACTCCATTATGGATACAAAGAGACACTTGCATCCTTTGATACAGCGAGCGGAAATACATTTCCTCCAGTATTGCCTACTCCTCAAGAAAATATTTCTCTAGAGATAGTGACCTATGCATTAGACCAACGAAAGATATTACGCCAGCTTATTAGGAATGGTGATGTTGATTCTGCATTCAAGAAGCTTCGGGAATGGTATCCACAACTTGTTCAGGATGACATGTCCACTATTTGCTTCCTTCTTCATTGTCAAAAGTACATCGAACTTATTATGAAAGGAATGTTGGAGAGTGCAGTAACTTATGCTCGCTCTGAGTTAGCGAGATTTTTTGGAGTAAAGAATCTTGAGGATCTACTTCAGGATTGTCTTGCATTGCTTGCATATGAGGAACCAGCGAAGTCTTCTGTAGGATACCTACTCAGCCTGGCTCAAAGAGAACTAGTTGCAGATGCAGTAAATGCTATGGTCTTATCAACTAATCCTGCAGTGCAAAATCCAGAAAGTTGTCTGCAATCATCTCTTGAAAGATTACTGAGGCAGCTAACAGCCTGTTGTTTAGAGAGACGGCTTCTTAATGGGGGACAAGGTGAAATATTTTGTTTGCACAAGATGTTACATGGTGGCAAGGAAGGATCATGGTGAACTGTAATTGTACTTATTTTGAATTTCAAGCGCCCTTAGTTCATGTGTATTAATAATTTTGGAAGCGTTATTGCACGTTATTTTGTTAATGGTGGATGTTCATTGTTTTCTATATAATTAGTAGTTTCACGATTCATCTGTGTCCGTATTCCTTGAATGTTACTGATGGTCTGAAATTTGGTTCCCACGTATTTACACTGTTATTTAATGGAAATGTTCGCGAAATACATGAACTTTGAGCGTGCAAAAACAATTTGCATACAAGTTTAAAACTGCCAAGAGTTTGCTTTTTAGTATCACTTTTTTTTTA

Ace file of the UniGene sp_v3.0_unigene5440

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RanBPM-like n=3 Tax=Oryza sativa RepID=Q6ZI83_ORYSJ	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	B30.2/SPRY domain	IPR001870	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	CRA domain	IPR013144	-	-
Sma3	SPla/RYanodine receptor subgroup	IPR018355	-	-
Sma3	SPla/RYanodine receptor SPRY	IPR003877	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G35470.2	SPla/RYanodine receptor (SPRY) domain-containing protein chr1:13051636-13054922 REVERSE LENGTH=467	55%
RefSeq	Arabidopsis thaliana	NP_973963.1	SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002327265.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQZ1

Fln msg:

Fln protein: MLNNEEGVSGSLNRISLTQLGWRRGAEDPVEEEEAPTYLNTTTNCPFLVISTDKLSAQYNGEARHGYDVGAIQGNCPAPVRKLLYYFEINVKDKGQKGNVSIGFTDQHFKMTRQPGWEPNSFGYHGDDGYLYHGNGKGGEPFGPKFTTGDTVGAGINYASQTVFFTKNGKLVGSTPKEVKGPLYPTIGLHSPNEKTDVNFGQRPFVFDIEQLAQEEREKRQTIIEKVSLPLSVSHWIVRSYLLHYGYKETLASFDTASGNTFPPVLPTPQENISLEIVTYALDQRKILRQLIRNGDVDSAFKKLREWYPQLVQDDMSTICFLLHCQKYIELIMKGMLESAVTYARSELARFFGVKNLEDLLQDCLALLAYEEPAKSSVGYLLSLAQRELVADAVNAMVLSTNPAVQNPESCLQSSLERLLRQLTACCLERRLLNGGQGEIFCLHKMLHGGKEGSW*

Protein Length: 457

Fln nts: ATGGGGCTGTCAAAGAAAGCATAGAATTTTCTCCTCATTCTCGCACACGTTATACGTGGAAGTTGGAAGGGCTGATTTCTTCCCCTCATTCTTCCCCACGTTACATATGGTATCTGGAAGGGCTGATCTATTTATAATCTTCGCAAGCAAAATACATTAAAGGATTCGAAATCTCTGTTTGTAATGCATCGCCTTCCCCACATCGACCTCCGTTACGCTGTTGTGATAATCTGCTGGGATATAACACGGGGGCCGAATTATAGTTTTCAGGGTTTCAGAAGAATTTTGGCTCTCAGGGTTTGATAAGGAATTTCATCTGTCAGGGTTTGATAAAGAAACTCTGCTATTAGGGTTCCACGAAATTGGAGAAATTTTGCAGAATTTAAAGTTGCAGTGCAATAGTAGGGACTGTCTTTTTCATGTTTTTATGAATTTTTTGTTGGAAGAAGTTTACGAGG_-_ATGTTGAACAATGAGGAAGGAGTGAGCGGGAGCTTAAACAGGATAAGCCTGACCCAACTGGGTTGGAGGAGGGGTGCCGAAGATCCAGTGGAGGAGGAAGAAGCTCCCACATACCTGAATACCACCACCAATTGCCCTTTCTTGGTCATATCAACTGATAAGCTCTCTGCACAGTATAACGGTGAAGCGCGGCATGGCTATGATGTCGGAGCAATACAGGGCAACTGCCCCGCTCCGGTCCGGAAGCTTCTTTATTACTTTGAGATTAATGTCAAGGACAAGGGACAGAAAGGCAACGTTTCTATTGGCTTCACCGATCAGCATTTCAAGATGACCAGACAACCCGGGTGGGAACCGAATAGCTTCGGGTATCACGGAGATGATGGATATCTGTACCATGGAAATGGAAAGGGTGGTGAACCTTTTGGTCCCAAATTTACAACTGGAGATACAGTGGGAGCTGGCATAAATTATGCTTCACAGACTGTGTTTTTTACAAAGAATGGAAAGCTTGTCGGATCAACTCCAAAGGAAGTTAAGGGGCCCTTATATCCTACAATTGGTCTTCATAGCCCAAATGAGAAGACGGATGTGAATTTTGGACAACGGCCATTTGTGTTTGATATTGAGCAATTGGCGCAAGAGGAGAGAGAAAAACGCCAAACAATAATAGAAAAAGTATCGTTGCCCCTTAGTGTCAGCCATTGGATTGTTCGTTCTTACCTACTCCATTATGGATACAAAGAGACACTTGCATCCTTTGATACAGCGAGCGGAAATACATTTCCTCCAGTATTGCCTACTCCTCAAGAAAATATTTCTCTAGAGATAGTGACCTATGCATTAGACCAACGAAAGATATTACGCCAGCTTATTAGGAATGGTGATGTTGATTCTGCATTCAAGAAGCTTCGGGAATGGTATCCACAACTTGTTCAGGATGACATGTCCACTATTTGCTTCCTTCTTCATTGTCAAAAGTACATCGAACTTATTATGAAAGGAATGTTGGAGAGTGCAGTAACTTATGCTCGCTCTGAGTTAGCGAGATTTTTTGGAGTAAAGAATCTTGAGGATCTACTTCAGGATTGTCTTGCATTGCTTGCATATGAGGAACCAGCGAAGTCTTCTGTAGGATACCTACTCAGCCTGGCTCAAAGAGAACTAGTTGCAGATGCAGTAAATGCTATGGTCTTATCAACTAATCCTGCAGTGCAAAATCCAGAAAGTTGTCTGCAATCATCTCTTGAAAGATTACTGAGGCAGCTAACAGCCTGTTGTTTAGAGAGACGGCTTCTTAATGGGGGACAAGGTGAAATATTTTGTTTGCACAAGATGTTACATGGTGGCAAGGAAGGATCATGGTGA___ACTGTAATTGTACTTATTTTGAATTTCAAGCGCCCTTAGTTCATGTGTATTAATAATTTTGGAAGCGTTATTGCACGTTATTTTGTTAATGGTGGATGTTCATTGTTTTCTATATAATTAGTAGTTTCACGATTCATCTGTGTCCGTATTCCTTGAATGTTACTGATGGTCTGAAATTTGGTTCCCACGTATTTACACTGTTATTTAATGGAAATGTTCGCGAAATACATGAACTTTGAGCGTGCAAAAACAATTTGCATACAAGTTTAAAACTGCCAAGAGTTTGCTTTTTAGTATCACTTTTTTTTTA

Fln Alignment:

Contig5440___MLNNEEGVSGSLNRISLTQLGWRRGAEDPVEEEEAPTYLNTTTNCPFLVISTDKLSAQYNGEARHGYDVGAIQGNCPAPVRKLLYYFEINVKDKGQKGNVSIGFTDQHFKMTRQPGWEPNSFXXXXXXXXXXXXXXKGGEPFGPKFTTGDTVGAGINYASQTVFFTKNGKLVGSTPKEVKGPLYPTIGLHSPNEKTDVNFGQRPFVFDIEQLAQEEREKRQTIIEKVSLPLSVSHWIVRSYLLHYGYKETLASFDTASGNTFPPVLPTPQENISLEIVTYALDQRKILRQLIRNGDVDSAFKKLREWYPQLVQDDMSTICFLLHCQKYIELIMKGMLESAVTYARSELARFFGVKNXXXXXXXXXXXXXYEEPAKSSVGYLLSLAQRELVADAVNAMVLSTNPAVQNPXXXXXXXXXXXXXXXTACCLERRLLNGGQGEIFCLHKMLHGGKEGSW
B8LQZ1______________MLNNEEGVSGSLNRISLAQLGWRRGPDDPVEEEEAPTYLNTKINCPFLVISTDKLSAQYNGDARHGYDVGAIQSNCPAPVRKLLYYFEIYVKDKGHKGNVSIGFTDQHFKMSRQPGWEPNTYGYHGDDGLLYHGNGKDGEPFGPKFTTGDTVGAGINYASQTVYFTKNGKFVGSAPKDVKGPLYPTIGLHSPNEKVDVNFGQRPFVFDIEQLAQEEREKCQAIIEKVSLPLSVSHWIVRSYLLHYGYKDTLASFDTASGNTIPSVLPTPQENNSLDIVTYALDERKLLRQLIRNGDIDSAFKRLRERYPQLVQDDMSTICFLLHCQKYIELVMKGMLEIAVTYARSELSRFFGVKYLEDLLQDCLALLAYEEPGKSSVGYLLSLAQRELVADAVNAVVLSTNPAVQNPESCLQSSLERLLRQLTACCLERRLLNGGQGEIFCLHKMLHGVKEGSW

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
891	80		20		0.995493
928	85		14		0.993533
1034	88		11		0.923564
1628		14		85	0.999981
1723	89			10	0.999919
2003	28			71	1.0
2057	12		87		0.992554
2058	85		14		0.993533
2059	85		14		0.993533
2060	16	83			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain