SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5439

Length: 2758 nt

UniGene Fasta

>sp_v3.0_unigene5439
TAAATCAACGCAGAGTACGCGGGGAATGAAAAGCTTCCGAGGAGAGCCTTTGAGATGTAGCCTTATAAACAAATATTTCCAAGTCCGGGAGCGTTTCAGGATCTGTTGTCTTGCAGAGGCGAATCAGAAGAATGGGCTCTTGGGAGCAGTCCACAGTGCCGAGCATTGCATGGAAGCTATTCATCATTGTGCTGCTGCTGACTTTCCTGGAAGATCATGCAGTGGTTGGTGATAATGCTTCTGATAAAAAGGCCCTCTTGGCTTTCAAGGCAGCGGTTGGGAAGCGTCTGAACTGGTCCCAGTCCACAAATCCGTGCACCCCCTGGTTCGGAATTACGTGTATAGGATCCCGCGTGACAGAGGTGAGACTTCCTGGACGGTCTCTGTTTGGGTCAATCCCATCGGGAATTCTGGGAAACTTGAGCGAGTTAGGAGTATTGAGCTTGAGATACAACTCGCTCAATGGTCCTGTACCTTCAGATCTAGGTAAGTGCACTCAGTTGAGGAAGCTGTACTTACAGAGCAATGGATTTACCGGGCCCATACCATCATTTTTTTCTACGTTTCCCAATCTAGTTATTTTGAATCTGGCCTTCAACAGGTTTAGTGGCCCTATTCCTAGCTCTCTGAGCAATTTGCAGAAATTGGCTACTCTGTATCTTGATAATAATTCTTTAAATGGGTCCATTTCTGCATTAAATCCCCCCAATCTGCAGCAATTGAATGTATCAAACAATCAACTCAATGGATCTGTGCCTCGCACACTGCAAAAGTTCCCCGCGAGTTCATTTCTCGGGAACTCTTTGTGTGGGTTTCCTTTGCTATCTTGTGTAGGCCTTGCCCCATCACCGAGTCCTTCAAGTGGGCACAAGGGAAAAAATAAGCTGGGGGCTTGGGCCATTGTGGGTATTGTTTTAGGATGTTTAGCTTTTCTAGTTCTCTTATTCCTTATATTGTTTCTTTGCAAGAGGAAGAAAAAAAGGGAAAATCCGAGAGTGGTTGAGTTTGCCCCAGGCATCAAGGCCCCTGATGATGCACCAGAGGACACGATTCCCAAAGAGGATTTTCCAGCTCCTACTGTGCAGGAAGTTGAAAAGAATACTAGTAAAAGGCTCGTTTTCTTTGAAGGTAGCCAGAGGACATTTGATCTCGAAGATCTTCTTAGAGCTTCAGCCGAGGTTTTGGGTAAGGGGAGCGTTGGGACTGCTTACAAGGCTGTTTTAGAGTTTGGGTTAGTTGTGGCAGTGAAGCGGTTGAAGGATGTTTTAATTGGGCAGAAAGAATTTGTTCAACAGATTGAACAAGTTGGAAAAATGCAACATGAAAATCTGGTGCCTCTCAGAGCTTATTACTTTTCGAAGGATGAAAAGCTTCTCGTATATGATTATATGGCAATGGGCAGTCTCTCTTCCCTTCTGCATGGTAACAGGGGAGCAGGTCGAACTCCATTAGACTGGGAAACACGCTCTCGTATTGCCCTTGGTGCAGCTAGAGGCATCGAGTATCTACATAGTAGAGGCAGAGAAATTTCTCATGGAAACATCAAGTCTTCCAACATTCTTCTCACCAGGGACTATAATGCCGGTGTTTCAGATTTTGGGCTTGCTCAGTTAGTGAGTTCAACTCCATCTGCCAATAGAATTGTCGGATATAGAGCTCCAGAAGTCACCGATGCTCGCAAAATTTCACAGAAGGCTGATGTTTTCAGCTTTGGTGTATTGCTTTTGGAGATACTGACTGGAAAAGCACCTTCTCATGGGGCCAATGATGACGGAGTTGATCTTCCACGTTGGGTGCAGTCCATTGTTCGTGAGGAATGGACTGCAGAAGTGTTTGACATAGAGCTTCTAAGACACCATAACTTTGAAGAAGATATGGTTCAGTTATTGCAGGTTGCAATTGATTGTGTTGCACAATATCCAGATCAAAGACCCAGCATGAAGGAAGTAGTCAAAAGGATTGAAGATTTGAGGCAAAATATTGAAGATGATGATGGCCCTGAGAATCTATCCAGTTCTGCAGAAATTCCTGATTGAGGGACAACGTCAGTGATAAAGATTAATTAGACCCAGGCATTGCCAATATGCCAAAGCTTGATTGGAACCATTCTTCTTTGTGACTTAAGTTGGATTTCGTCATGTTGCAGAATTGCTCTGTTGATTTTATTATTTCAGTTATCTGCAGGTTGCCAGAATATGTTAGAGTGTTTTCCTTCTCCCATCTAAATCTGTTTCACCCCATTTTCCCTTTTAGATAATGGAAGGATATTGGAATGCTTGGCAACCTTTCGGGCAGTGCCCAAAGGAAGCTACCTGTGTCTCATCTCAGTAGCAGCTGCTTAATGATTGTAGCATCTGCTGGTTTTTGATTTTTTTACTCCGTCAATGATTTTTGCAAAATAATTGATTAGAGGTTGAAAATTGTTTCTTCTTGCAAGTCCTTTGAAAACATTATAAGGTGACAAATGAAAATTGGGATTTAAGCTTTATTAAAATCCATAATTCAAAAAGTTCTCAGCTCTTGATAGCTGATGGGTACTTATTGCAGCATCTTTTCTCTTTTATGTTAGGCTTTATTTTAGGACATTTCGGGTCAAGTTATATGAGTCGCCTTCTTGGATTGCCATATGGTAACCTGATCAGAAATAGTTATGGAGATTCTGATAATTTAGCAGGTTGAAGTTTTGAACTGAGCTATAAAACTATTTATGTGTTATACACGCTAGAATTACATGTATGATGTCCATGACTAGATTTTA

Ace file of the UniGene sp_v3.0_unigene5439

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5A8_RICCO	-	-	0.0	52%
FL-Next	sp=Probable inactive receptor kinase RLK902; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	9.778e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	[Tau protein] kinase.	EC:2.7.11.26	-	1.897e-13	-

Source	Gene names
Sma3	8F2.11; AP2_E06.2; AT1G48480; AT1G68400; AT2G26730; AT3G02880; AT3G08680; AT3G17840; AT4G23740; AT5G05160; AT5G16590; AT5G24100; AT5G53320; AT5G58300; At1g48480; At1g64210; At1g68400; At2g26730; At2g36570; At3g02880; At3g08680; At3g17840; At4g23740; At5g0

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to symbiotic fungus	GO:0009610	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G17840.1	RLK902 receptor-like kinase 902 chr3:6106092-6108430 FORWARD LENGTH=647	55%
RefSeq	Arabidopsis thaliana	NP_566589.1	putative inactive receptor kinase RLK902 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002317861.1	predicted protein, partial [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LVI6

Fln msg:

Fln protein: MGSWEQSTVPSIAWKLFIIVLLLTFLEDHAVVGDNASDKKALLAFKAAVGKRLNWSQSTNPCTPWFGITCIGSRVTEVRLPGRSLFGSIPSGILGNLSELGVLSLRYNSLNGPVPSDLGKCTQLRKLYLQSNGFTGPIPSFFSTFPNLVILNLAFNRFSGPIPSSLSNLQKLATLYLDNNSLNGSISALNPPNLQQLNVSNNQLNGSVPRTLQKFPASSFLGNSLCGFPLLSCVGLAPSPSPSSGHKGKNKLGAWAIVGIVLGCLAFLVLLFLILFLCKRKKKRENPRVVEFAPGIKAPDDAPEDTIPKEDFPAPTVQEVEKNTSKRLVFFEGSQRTFDLEDLLRASAEVLGKGSVGTAYKAVLEFGLVVAVKRLKDVLIGQKEFVQQIEQVGKMQHENLVPLRAYYFSKDEKLLVYDYMAMGSLSSLLHGNRGAGRTPLDWETRSRIALGAARGIEYLHSRGREISHGNIKSSNILLTRDYNAGVSDFGLAQLVSSTPSANRIVGYRAPEVTDARKISQKADVFSFGVLLLEILTGKAPSHGANDDGVDLPRWVQSIVREEWTAEVFDIELLRHHNFEEDMVQLLQVAIDCVAQYPDQRPSMKEVVKRIEDLRQNIEDDDGPENLSSSAEIPD*

Protein Length: 636

Fln nts: TAAATCAACGCAGAGTACGCGGGGAATGAAAAGCTTCCGAGGAGAGCCTTTGAGATGTAGCCTTATAAACAAATATTTCCAAGTCCGGGAGCGTTTCAGGATCTGTTGTCTTGCAGAGGCGAATCAGAAGA_-_ATGGGCTCTTGGGAGCAGTCCACAGTGCCGAGCATTGCATGGAAGCTATTCATCATTGTGCTGCTGCTGACTTTCCTGGAAGATCATGCAGTGGTTGGTGATAATGCTTCTGATAAAAAGGCCCTCTTGGCTTTCAAGGCAGCGGTTGGGAAGCGTCTGAACTGGTCCCAGTCCACAAATCCGTGCACCCCCTGGTTCGGAATTACGTGTATAGGATCCCGCGTGACAGAGGTGAGACTTCCTGGACGGTCTCTGTTTGGGTCAATCCCATCGGGAATTCTGGGAAACTTGAGCGAGTTAGGAGTATTGAGCTTGAGATACAACTCGCTCAATGGTCCTGTACCTTCAGATCTAGGTAAGTGCACTCAGTTGAGGAAGCTGTACTTACAGAGCAATGGATTTACCGGGCCCATACCATCATTTTTTTCTACGTTTCCCAATCTAGTTATTTTGAATCTGGCCTTCAACAGGTTTAGTGGCCCTATTCCTAGCTCTCTGAGCAATTTGCAGAAATTGGCTACTCTGTATCTTGATAATAATTCTTTAAATGGGTCCATTTCTGCATTAAATCCCCCCAATCTGCAGCAATTGAATGTATCAAACAATCAACTCAATGGATCTGTGCCTCGCACACTGCAAAAGTTCCCCGCGAGTTCATTTCTCGGGAACTCTTTGTGTGGGTTTCCTTTGCTATCTTGTGTAGGCCTTGCCCCATCACCGAGTCCTTCAAGTGGGCACAAGGGAAAAAATAAGCTGGGGGCTTGGGCCATTGTGGGTATTGTTTTAGGATGTTTAGCTTTTCTAGTTCTCTTATTCCTTATATTGTTTCTTTGCAAGAGGAAGAAAAAAAGGGAAAATCCGAGAGTGGTTGAGTTTGCCCCAGGCATCAAGGCCCCTGATGATGCACCAGAGGACACGATTCCCAAAGAGGATTTTCCAGCTCCTACTGTGCAGGAAGTTGAAAAGAATACTAGTAAAAGGCTCGTTTTCTTTGAAGGTAGCCAGAGGACATTTGATCTCGAAGATCTTCTTAGAGCTTCAGCCGAGGTTTTGGGTAAGGGGAGCGTTGGGACTGCTTACAAGGCTGTTTTAGAGTTTGGGTTAGTTGTGGCAGTGAAGCGGTTGAAGGATGTTTTAATTGGGCAGAAAGAATTTGTTCAACAGATTGAACAAGTTGGAAAAATGCAACATGAAAATCTGGTGCCTCTCAGAGCTTATTACTTTTCGAAGGATGAAAAGCTTCTCGTATATGATTATATGGCAATGGGCAGTCTCTCTTCCCTTCTGCATGGTAACAGGGGAGCAGGTCGAACTCCATTAGACTGGGAAACACGCTCTCGTATTGCCCTTGGTGCAGCTAGAGGCATCGAGTATCTACATAGTAGAGGCAGAGAAATTTCTCATGGAAACATCAAGTCTTCCAACATTCTTCTCACCAGGGACTATAATGCCGGTGTTTCAGATTTTGGGCTTGCTCAGTTAGTGAGTTCAACTCCATCTGCCAATAGAATTGTCGGATATAGAGCTCCAGAAGTCACCGATGCTCGCAAAATTTCACAGAAGGCTGATGTTTTCAGCTTTGGTGTATTGCTTTTGGAGATACTGACTGGAAAAGCACCTTCTCATGGGGCCAATGATGACGGAGTTGATCTTCCACGTTGGGTGCAGTCCATTGTTCGTGAGGAATGGACTGCAGAAGTGTTTGACATAGAGCTTCTAAGACACCATAACTTTGAAGAAGATATGGTTCAGTTATTGCAGGTTGCAATTGATTGTGTTGCACAATATCCAGATCAAAGACCCAGCATGAAGGAAGTAGTCAAAAGGATTGAAGATTTGAGGCAAAATATTGAAGATGATGATGGCCCTGAGAATCTATCCAGTTCTGCAGAAATTCCTGATTGA___GGGACAACGTCAGTGATAAAGATTAATTAGACCCAGGCATTGCCAATATGCCAAAGCTTGATTGGAACCATTCTTCTTTGTGACTTAAGTTGGATTTCGTCATGTTGCAGAATTGCTCTGTTGATTTTATTATTTCAGTTATCTGCAGGTTGCCAGAATATGTTAGAGTGTTTTCCTTCTCCCATCTAAATCTGTTTCACCCCATTTTCCCTTTTAGATAATGGAAGGATATTGGAATGCTTGGCAACCTTTCGGGCAGTGCCCAAAGGAAGCTACCTGTGTCTCATCTCAGTAGCAGCTGCTTAATGATTGTAGCATCTGCTGGTTTTTGATTTTTTTACTCCGTCAATGATTTTTGCAAAATAATTGATTAGAGGTTGAAAATTGTTTCTTCTTGCAAGTCCTTTGAAAACATTATAAGGTGACAAATGAAAATTGGGATTTAAGCTTTATTAAAATCCATAATTCAAAAAGTTCTCAGCTCTTGATAGCTGATGGGTACTTATTGCAGCATCTTTTCTCTTTTATGTTAGGCTTTATTTTAGGACATTTCGGGTCAAGTTATATGAGTCGCCTTCTTGGATTGCCATATGGTAACCTGATCAGAAATAGTTATGGAGATTCTGATAATTTAGCAGGTTGAAGTTTTGAACTGAGCTATAAAACTATTTATGTGTTATACACGCTAGAATTACATGTATGATGTCCATGACTAGATTTTA

Fln Alignment:

Contig5439___LFIIVLLLTFLEDHAVVGDNASDKKALLAFKAAVGKR-LNWS-QSTNPCTPWFGITCIGSRVTEVRLPGRSLFGSIPSGILGNLSELGVLSLRYNSLNGPVPSDLGKCTQLRKLYLQSNGFTGPIPSFFSTFPNLVILNLAFNRFSGPIPSSLSNLQKLATLYLDNNSLNGSISAXXXXXXXXXXXXXXXXXXXXPRTLQKFPASSFLGNSLCGFPLLSCV--GLAXXXXXXXGH-----------KGKNKLGAWAIVGXXXXXXXXXXXXXXXXXXXKRKKKRENPRVVEFA---------PGIKAPDDAPEDTIPKEDFPAPTVQEVEKNTS--KRLVFFEGSQRTFDLEDLLRASAEVLGKGSVGTAYKAVLEFGLVVAVKRLKDVLIGQKEFVQQIEQVGKMQHENLVPLRAYYFSKDEKLLVYDYMAMGSLSSLLHGNRGAGRTPLDWETRSRIALGAARGIEYLHSRGREISHGNIKSSNILLTRDYNAGVSDFGLAQLVS-STPSANRIVGYRAPEVTDARKISQKADVFSFGVLLLEILTGKAPSHGA-NDDGVDLPRWVQSIVREEWTAEVFDIELLRHH---NFEEDMVQLLQVAIDCVAQYPDQRPSMKEVVKRIEDLRQNIEDDDG
Q9LVI6______________IFFSILLLSL--PLPSIGDLAADKSALLSFRSAVGGRTLLWDVKQTSPCN-WTGVLCDGGRVTALRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL-LDLDLSLDQFNVSNNLLNGSIPKSLQKFDSDSFVGTSLCGKPLVVCSNEGTVPSQPISVGNIPGTVEGSEEKKKRKKLSGGAIAGIVIGCVVGLSLIVMILMVLFRKKGNERTRAIDLATIKHHEVEIPGEKAAVEAPENRSYVNEYSPSAVKAVEVNSSGMKKLVFFGNATKVFDLEDLLRASAEVLGKGTFGTAYKAVLDAVTLVAVKRLKDVTMADREFKEKIEVVGAMDHENLVPLRAYYYSGDEKLLVYDFMPMGSLSALLHGNKGAGRPPLNWEVRSGIALGAARGLDYLHSQDPLSSHGNVKSSNILLTNSHDARVSDFGLAQLVSASSTTPNRATGYRAPEVTDPRRVSQKADVYSFGVVLLELLTGKAPSNSVMNEEGMDLARWVHSVAREEWRNEVFDSELMSIETVVSVEEEMAEMLQLGIDCTEQHPDKRPVMVEVVRRIQELRQSGADRVG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
639	30	69			1.0
694		88		11	0.923564
704		87		12	0.992554
832	33			66	1.0
837		66	33		1.0
851	28		71		1.0
852	85			14	0.993533
2479	44			55	1.0
2490		11		88	0.923564
2493	88		11		0.923564
2503		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain