SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5437

Length: 2002 nt

UniGene Fasta

>sp_v3.0_unigene5437
TTCAGTGTTTGTGAATGCGCGCCAAATTTATTTCAGTTGGAGGCGTATGTGCATTGGATGGTAGCAGGACAGAGCGCAATGGGTGTGAAGGGGAAATTGCAGATATCTCAGGAAGCATTTGATGCGCTGGTCCAAGAGAACATCAATGACTTCGACATGGAACCACAGGAGGCTGTTGAAGATGCTATCCAGACTTTCGAGTTACAGGGAGCTGACCTCACAGGTATTGTGGCAAGCATTGCAGGAGGTGAGAGTTTGACCAATCATCCTGTAATTCAATCTTTGAATGAACTGAGGACAATAGCTCCCAGTCTGGCTTCACTGAGTTTGCAAGAATTTTCTACTGAAAAACGAGCAAGTACTCAGGTTGTACTTGTAGATGAAAACATAAATCCCACACTCATCAAAATTGTAGAAGCACTGGATGCACTTTTCTTAGCATGTACTGCTGGTGGATCTGATAATGCTTCCATTGCCATCAAGAATGGAGGAATCGAGCTTGTAACCTCAGTTTGTGCAACACTTAAAACTGGTGGTGAACGATCATTAACATCTTCTCTAAAGGTTTTGGCTTTGCTTTTACAAGATGTCCAAAGCACTGAACAGTTTCGACAATGCAGTGGGCCCAATATTCTTATGGAAATATTAAATGAACATAATCACAAAAGCAGAATTGTTGAATATGGTTGTGCAGTTGTGGCAGCAGCTGCTACTGGAAATGAGGTCACCAAAGAAGCGTTCATGGAAATGAAAATAGATGATTTGCTAATAAAATTATTAAAGAGGAAGGAGAACAGAAATATTCAGAGTATTTATGATGTTATTTGTGTGCTAGTTACAGCTGATGATAATCGTGTTGTGGCTTCACAGGTTTACACCCATGCACGAAATTTTGCAAAAAGTGGCATGGCTGACGTACTGTTGGATGTTGCTCGAGAAGAGAACTTGGCTTCATCTTCGTTGGCAACTTTATGTACCACACTAAAAAGCATTGCAGTCAATGATGAGATTTGCAAATCAATTGCTGAGAATGGTGGTCTTGATGTGGTTCTTCAATGCATCGATGACAGTGGGAATCAGAGAAACAAAGCCTTAGCTAAGACTTCTTGCTCCTTGCTGACACAGTTAGCAGGCAGTGATGCCAATAAAGATGCTATTCTTCTCAAAGGAGGAATTGCAAAGATAATACGACTTTCTTCAGTCTATAGGGAAGAACCTTCTGTCCTGCAAGAGATTATGGCAACCATTCGTGCTTTAACCTTGCGGTCCCCAGCAAATGCAGCCAAGGCAGTTGAAGCAGGGGCTGTTGATCTTGCGGCTGAAGCTATGGAGGAACACTGTTCAGCACATCTAATGCAGAAGCAAGCTTGTCTGATGATACGTAATCTGGCTGTTCGAAATCCTGAAAATAGACCAATCATACTGGAGAAAGGTCTGGAAAATCTTATAAGAAATGCCAAGGCAAATCATGAAAGCTGCAAAGATGCTGCTACTTCTGCTCTAAGAGATCTGGGATTGGATGACTACAATATTTGATTCATAAGCTCTAAAAGTAGAAAGTGAAATACAGGCAACTCAAGTAACTACCCCAGAAACTGTTGAGAATTTTCAACTAATTACAACTTACAATGTCGTTGATGGTTCTAGCAGCATGTAGCTATTGTGTTTTCTCTTAGGAATCCATTTCTTGTATTCATATTTTATAATTATGTTATAAATTTTCACACAAAATATAGGTAGCTGATTAGATGGTGTTCACATGTCCAGCAAAAGATTTGTTCCCATGAAACAATTGATGTTAAGGTGATGTCCTTAACCGTGACTTTGTATTAGAAGACCACTCAGGCCATCGTCAATAAGCAATTGCATGTTGCAATAATTATTGCAGAACAAGGACTGCAACAATGTGAACCATAAAATTGATTATCAATTTTGTGTTGGTAACACATTTCAGATCTTTATTAAATATATTAAAAAGATGATTATATCTCAGGTCTAATAA

Ace file of the UniGene sp_v3.0_unigene5437

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gb\|AAM20686.1\| putative protein [Arabidopsis thaliana] gb\|ABH04463.1\| At4g33945 [Arabidopsis thaliana] gb\|AEE86298.1\| armadillo/beta-catenin-like repeat-containing protein [Arabi	-	-	0.0	44%
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	49%

Source	Gene names
Sma3	AT4g33940; At4g33940; F17I5.130; GSVIVT00036535001; OJ1175_B01.27; Os02g0761200; OsI_09027; OsJ_08473; P0486G03.3; PHYPADRAFT_94302; POPTRDRAFT_804248; POPTRDRAFT_837122; RCOM_0774230; VITISV_035941;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33945.1	ARM repeat superfamily protein chr4:16268119-16270514 FORWARD LENGTH=464	49%
RefSeq	Arabidopsis thaliana	NP_567944.1	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002330316.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C0PGI4

Fln msg: your sequence is longer than subject: 493 - 460

Fln protein: MVAGQSAMGVKGKLQISQEAFDALVQENINDFDMEPQEAVEDAIQTFELQGADLTGIVASIAGGESLTNHPVIQSLNELRTIAPSLASLSLQEFSTEKRASTQVVLVDENINPTLIKIVEALDALFLACTAGGSDNASIAIKNGGIELVTSVCATLKTGGERSLTSSLKVLALLLQDVQSTEQFRQCSGPNILMEILNEHNHKSRIVEYGCAVVAAAATGNEVTKEAFMEMKIDDLLIKLLKRKENRNIQSIYDVICVLVTADDNRVVASQVYTHARNFAKSGMADVLLDVAREENLASSSLATLCTTLKSIAVNDEICKSIAENGGLDVVLQCIDDSGNQRNKALAKTSCSLLTQLAGSDANKDAILLKGGIAKIIRLSSVYREEPSVLQEIMATIRALTLRSPANAAKAVEAGAVDLAAEAMEEHCSAHLMQKQACLMIRNLAVRNPENRPIILEKGLENLIRNAKANHESCKDAATSALRDLGLDDYNI*

Protein Length: 494

Fln nts: TTCAGTGTTTGTGAATGCGCGCCAAATTTATTTCAGTTGGAGGCGTATGTGCATTGG_-_ATGGTAGCAGGACAGAGCGCAATGGGTGTGAAGGGGAAATTGCAGATATCTCAGGAAGCATTTGATGCGCTGGTCCAAGAGAACATCAATGACTTCGACATGGAACCACAGGAGGCTGTTGAAGATGCTATCCAGACTTTCGAGTTACAGGGAGCTGACCTCACAGGTATTGTGGCAAGCATTGCAGGAGGTGAGAGTTTGACCAATCATCCTGTAATTCAATCTTTGAATGAACTGAGGACAATAGCTCCCAGTCTGGCTTCACTGAGTTTGCAAGAATTTTCTACTGAAAAACGAGCAAGTACTCAGGTTGTACTTGTAGATGAAAACATAAATCCCACACTCATCAAAATTGTAGAAGCACTGGATGCACTTTTCTTAGCATGTACTGCTGGTGGATCTGATAATGCTTCCATTGCCATCAAGAATGGAGGAATCGAGCTTGTAACCTCAGTTTGTGCAACACTTAAAACTGGTGGTGAACGATCATTAACATCTTCTCTAAAGGTTTTGGCTTTGCTTTTACAAGATGTCCAAAGCACTGAACAGTTTCGACAATGCAGTGGGCCCAATATTCTTATGGAAATATTAAATGAACATAATCACAAAAGCAGAATTGTTGAATATGGTTGTGCAGTTGTGGCAGCAGCTGCTACTGGAAATGAGGTCACCAAAGAAGCGTTCATGGAAATGAAAATAGATGATTTGCTAATAAAATTATTAAAGAGGAAGGAGAACAGAAATATTCAGAGTATTTATGATGTTATTTGTGTGCTAGTTACAGCTGATGATAATCGTGTTGTGGCTTCACAGGTTTACACCCATGCACGAAATTTTGCAAAAAGTGGCATGGCTGACGTACTGTTGGATGTTGCTCGAGAAGAGAACTTGGCTTCATCTTCGTTGGCAACTTTATGTACCACACTAAAAAGCATTGCAGTCAATGATGAGATTTGCAAATCAATTGCTGAGAATGGTGGTCTTGATGTGGTTCTTCAATGCATCGATGACAGTGGGAATCAGAGAAACAAAGCCTTAGCTAAGACTTCTTGCTCCTTGCTGACACAGTTAGCAGGCAGTGATGCCAATAAAGATGCTATTCTTCTCAAAGGAGGAATTGCAAAGATAATACGACTTTCTTCAGTCTATAGGGAAGAACCTTCTGTCCTGCAAGAGATTATGGCAACCATTCGTGCTTTAACCTTGCGGTCCCCAGCAAATGCAGCCAAGGCAGTTGAAGCAGGGGCTGTTGATCTTGCGGCTGAAGCTATGGAGGAACACTGTTCAGCACATCTAATGCAGAAGCAAGCTTGTCTGATGATACGTAATCTGGCTGTTCGAAATCCTGAAAATAGACCAATCATACTGGAGAAAGGTCTGGAAAATCTTATAAGAAATGCCAAGGCAAATCATGAAAGCTGCAAAGATGCTGCTACTTCTGCTCTAAGAGATCTGGGATTGGATGACTACAATATTTGA___TTCATAAGCTCTAAAAGTAGAAAGTGAAATACAGGCAACTCAAGTAACTACCCCAGAAACTGTTGAGAATTTTCAACTAATTACAACTTACAATGTCGTTGATGGTTCTAGCAGCATGTAGCTATTGTGTTTTCTCTTAGGAATCCATTTCTTGTATTCATATTTTATAATTATGTTATAAATTTTCACACAAAATATAGGTAGCTGATTAGATGGTGTTCACATGTCCAGCAAAAGATTTGTTCCCATGAAACAATTGATGTTAAGGTGATGTCCTTAACCGTGACTTTGTATTAGAAGACCACTCAGGCCATCGTCAATAAGCAATTGCATGTTGCAATAATTATTGCAGAACAAGGACTGCAACAATGTGAACCATAAAATTGATTATCAATTTTGTGTTGGTAACACATTTCAGATCTTTATTAAATATATTAAAAAGATGATTATATCTCAGGTCTAATAA

Fln Alignment:

Contig5437___LQISQEAFDALVQENINDFDMEPQEAVEDAIQTFELQGADLTGIVASIAGGESLTN-HPVIQSLNELRTIAPSLASLSLQEFSTEKRASTQVVLVDENINPTLIKIVEALDALFLACTAGGSDNASIAIKNGGIELVTSVCATLKTGGERXXXXXXXXXXXXXQDVQSTEQFRQCSGPNILMEILNEHNHKSRIVEYGCAVVAAAATGNEVTKEAFMEMXXXXXXXXXXXXXENRNIQSIYDVICVLVTADDNRVVASQVYTHARNFAKSGMADVLLDVAREENLASSSLATLCTTLKSIAVNDEICKSIAENGGLDVVLQCIDDSGNQRNKALAKTSCSLLTQLAGSDANKDAILLKGGIAKIIRLSSVYREEPSVLQEIMATIRALTLRSPXXXXXXXXXXXXXXXXXXMEEHCSAHLMQKQACLMIRNLAVRNPENRPIILEKGLENLIRNAKANHESCKDAATSALRDLGLDDYN
C0PGI4______________ISISQEAFDSMVRENMEDLGMDPDEALADAVEALTLQGADLSGIVKRVPGEATAAEVSPVVRVLDELK------ASLSASGGS-EQDLDGLVSLLDELRN--------------LCCSGEGSENAAIAVRNGVVEALVALCASARVEQERLLASALKSLSSVLRDVASTEKFRRSEGPRIVMDLLQGGSENSDLLDAGFSVVAAGSAGNEVVKESFMDLKVDELILRVMKDKSKSNVQSLYDAIRVLLKPDDNRVVASQVYGYSRRFAEIGVAEVLVNALREQ-VAPSSLPSACAALKSIAVNDEICRSISENGGIDVLLQCIDGAGEQKNKAVARSCCSLLSKLAASDANKSIIIQRGGFDRFLKLTSRFSEDPAIIQEVMSMVTVLTLRSPENAARAMEEGYGTLAIQSMQRFPSSVQTQKQACLMIRNLVARNPENRIVLLNDGAEKLIRKAMALHRSCKDAASSALRDLGLDNYN

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
423		20		80	0.995493
441		80		20	0.995493
533	20		80		0.995493
566	33		66		1.0
567	33			66	1.0
569			33	66	1.0
667	87			12	0.992554
668	87		12		0.992554
669			87	12	0.992554
739	16		83		0.994512
924		25		75	0.996473
938	25		75		0.996473
1143	25	75			0.996473
1146	75			25	0.996473
1147			25	75	0.996473
1148	66		33		0.997452
1184	66	33			0.997452
1346	20		80		0.995493
1347		80		20	0.995493
1348	80		20		0.995493
1349		80		20	0.995493
1364		83		16	0.994512
1369	16			83	0.994512
1372			16	83	0.994512
1373		83	16		0.994512
1469		88	11		0.923564
1470	88		11		0.923564
1471			11	88	0.923564
1511		87	12		0.992554
1541	87	12			0.992554
1711		12		87	0.992554
1714		12		87	0.992554
1715	87		12		0.992554
1717	87		12		0.992554
1719	87	12			0.992554
1720		12		87	0.992554
1723			12	87	0.992554
1724		87	12		0.992554
1727	87			12	0.992554
1728		87	12		0.992554
1729	85			14	0.993533
1730	85	14			0.993533
1732	85	14			0.993533
1734	85	14			0.993533
1735	14			85	0.993533
1848		60		40	1.0
1922	25			75	0.996473
1924	25			25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain