SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5434

Length: 1497 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5434

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, acting on the CH-CH group of donors	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	71%

Source	Gene names
Sma3	AT1G73650; At1g73650; F25P22.7; GSVIVT00017810001; LOC_Os03g50070; MtrDRAFT_AC139526g26v2; OSJNBb0022E02.10; Os03g0708400; OsI_13219; OsJ_12291; PHYPADRAFT_128243; PHYPADRAFT_215875; PHYPADRAFT_216740; POPTRDRAFT_900773; RCOM_0171070; T10F20.18;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity, acting on the CH-CH group of donors	GO:0016627	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	IPR001104	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Protein of unknown function DUF1295	IPR010721	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73650.3	Protein of unknown function (DUF1295) chr1:27688409-27690165 REVERSE LENGTH=302	67%
RefSeq	Arabidopsis thaliana	NP_565068.1	uncharacterized protein [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002321511.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SJ96

Fln msg: your sequence is shorter than subject: 288 - 307

Fln protein: MDDKFLAITAIVTVAYQLAFFLITAGFRFDKLTDFAGGTNFIILALLTAILKGTWHFRQIILTLFVLIWGLRLSFFLLFRILQWGEDRRFDEIRTDLKQLAMFWSFQVVWVWTVSLPVTLVNASSGNPRIQFQDIIGWIMWLVGFLIEAISDQQKLQFKNSRNTGRWCDIGFWKWSRHPNYFGEILLWWGIFVASTPLLEGAEWLAVIGPIFLTALLLFLSGIPLLEYSADKKFGSSTEYREYKRITSPLVLLPPAVYGKLPERFKQVFLLEFPFYSRKLNGEKPNY*

Protein Length: 289

Fln nts: ATGGGGGTCTCGGATTTACATGGGGAATAAAATAGTGTTTGAAAAATATACGTCGCTGGTCGGACA_-_ATGGACGATAAGTTTCTTGCCATCACCGCTATCGTTACTGTGGCCTATCAGTTGGCATTTTTCTTAATAACCGCTGGCTTCAGATTCGACAAACTCACAGACTTTGCAGGAGGCACAAACTTCATCATATTGGCTTTATTGACTGCAATATTGAAAGGGACATGGCACTTTAGACAGATTATACTGACTCTATTTGTACTAATCTGGGGGCTTCGCCTATCATTCTTTTTGCTGTTTCGGATATTGCAATGGGGCGAGGATCGGAGATTTGATGAGATTCGCACTGATTTAAAGCAGCTAGCAATGTTCTGGAGCTTTCAGGTAGTGTGGGTTTGGACTGTAAGCCTGCCAGTAACATTGGTCAATGCAAGCAGTGGAAACCCCAGAATCCAGTTCCAGGATATCATTGGGTGGATAATGTGGCTTGTTGGTTTTCTAATTGAGGCAATATCAGATCAACAAAAACTCCAATTTAAAAACTCGAGAAATACGGGAAGATGGTGTGATATAGGGTTCTGGAAGTGGTCTCGCCATCCAAATTACTTTGGTGAGATATTATTATGGTGGGGAATATTTGTTGCTTCAACGCCTCTACTAGAGGGTGCTGAATGGTTAGCAGTCATTGGTCCAATTTTCTTAACAGCCTTGCTACTGTTTCTCAGTGGCATACCATTGCTCGAGTATTCAGCAGATAAAAAGTTTGGCAGCTCGACAGAGTACCGAGAATATAAAAGGATTACTAGTCCACTTGTCCTGCTTCCACCGGCAGTTTATGGAAAATTGCCTGAAAGGTTTAAACAGGTTTTTCTTTTAGAATTTCCCTTCTACAGCCGAAAGCTAAATGGTGAGAAGCCGAATTACTGA___AAACTCGAATCCTTTATGAGAGTGCCTTGTACGCTTATAAACTGCTGTGCCTATAAAACAGCCTCTGAAGAGTTCTTCCTGTATGTTCCAGATCCTGGATGCTAGCAGCAGAATACTTGTTTTCTGGCAAGACAGCCAGATAAGCGGCAATGCTTCTCTTTTAAGTATGGTTTGAAACTACATTAATCTAGTTCACAATAACAAATATAATAATGCTATTTATAAAGCTTCATGTACACGAAACATTATACTGCCATTCACCTGGACCCAAAGTCATCCAACTGTGAAAGTTCATCAATCAACTAACAATTGATCTGAGACATGGTTGCAAAATTGTACTTAGCCGTTTGTTGAATCAATGCTAAAGATAACTCAGACTTTCGGTAACATGGAACTCTAGTGCAGCCTCATACGTGGAACTGCATCTTGATTGCAGATTATTTCTTTATTACATACATTTGAAACAAAACAAGAAAGCAATAGAATCTTTTGTCGTACCATGCTGATTTTCTAAATGTGCATCAACATTTAATCCAAGCAACAGAAGGGATGGGCCAGCCTTGGCAG

Fln Alignment:

Contig5434___GRTMDDKFLAITAIVTVAYQLAFFLITAGFRFDKLTDFAGGTNFIILALLTAILKGTWHFRQIILTLFVLIWGXXXXXXXXXXXXQWGEDRRFDEIRTDLKQLAMFWSFQVVWVWTVSLPVTLVNASSGNPRIQFQDIIGWIMWLVGFLIEAISDQQKLQFKNS-RNTGRWCDIGFWKWSRHPNYFGEILLWWGIFVASTPLLEGAEWLAVIGPIFLTALLLFLSGIPLLEYSADKKFGSSTEYREYKRITSPLVLLPPAVYGKLPERFKQVFLLEFPFYSRKLNGEKPNY
D7SJ96______________GTVIDSHFLALTAIVTVGYQFLFFIITALLKFDKVTDFAGSTNFVILAVLTLVLKGTWHFRQVVLTLLVVIWGLRLGIFLLMRILQWGEDRRFDEMRSNLGKLAVFWTFQAVWVWTVSLPVTIVNASGRDPSLQAADIIGWIMWSVGITIEASADQQKLSFKNSPENRGKWCNVGVWKYTRHPNYFGEILLWWGIFVASTPVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFGNVAGYRLYKSTTSPLVPLPPVVYGNLPSWFKTTFLLEFPFYSRNLPQEGQNW

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
60	22		77		0.999999
87		77	22		0.999999
137	90		10		0.90298
283		85		14	0.993533
389		16	83		0.994512
451		83	16		0.994512
522	20	20	60		0.99255
525		80		20	0.995493
636	20		80		0.995493
637		20	80		0.995493
639	83			16	0.994512
643			10	90	0.90298
803		14	85		0.993533
1041	10	90			0.90298
1043			88	11	0.923564
1044	88		11		0.923564
1045	88			11	0.923564
1059	10		90		0.90298
1062	90			10	0.90298
1063			90	10	0.90298
1101	20		60		0.99255
1102		20	80		0.995493
1103	20		20	60	0.99255
1347	33			66	1.0
1348	33		66		1.0
1349	33		66		1.0
1392	25			75	0.996473
1393		25	75		0.996473
1395	75			25	0.996473
1396	75			25	0.996473
1429	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain