SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5422

Length: 2485 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene5422
CGTCGTGACCTTTGCTGTCATAACATTGGAGGCGAACTTTCGATCCAATTCACATGTTAGTGTGCTGGGTAATTCTAATGCTATGGGAGCCTTGCCCTCTTTACATAACCATATAGCAGTGTCAGGGCATCCAAATGGGCAGGCACATTCTGGTAATTCAAATCACTTTCCAGGAATGAAATTTCCTGTCATAACATCTGAAGGTAACTTTCCAGCGCATTCACATTTTAGTGCATTGGAAAATACTAATCCTATGGGGACTCTATCCTCTTTACAACACTCTATGAATGTTCACTATAATAATGCTAAGCAGTTTCCAACTGACCCCAATTCTTCTATCAACCCATCTATGAAGTTCAGCTCATTTCCTCCTCCTCACGGGAAAGGTTATGGAGCTGAAAGAAATCCATTTCATCCTGAAGTGCAGCCAGATATTTTTCCTAACCCAATGCCTAATCTTCGTCCACCTATTACAAGTAGTTTATCTATGGAGAACCTTCCCGTATCAAGGACAGCCACCTCTTTTGACTCGGGGACTATACAACAAAGTCATAATGTACAAGGTGGATGTTATGTTTCAAATCAAATGCATCAAAAAATTTCTCCAGAACAGACACCTACTAATCCAGGAAATTTAAATCTAAACACCTCTGCTCAGGTGCATCCAATAGGAAGATGGCTGCTACCTCCAGAGCATAACGATACTGGGGCTCAAATAAGGATTATTTTGCAGGCCATAGAGACATTGAAACAGAATATGATGGTACCTTCAATAGGTAATATTGAAGATTGCATAAAATATCAAGAGATGCATATTTCTAATTTTGACATCCATGAGTTATTGGGGAAGGCTGTTGAGCAAAAGGAAATTGTAATAATGAGGGCTGGCGGAGCATCCCCGTTATATCTTCCACGTGCAACTAGTCTTTGGAAATGTGTGGATCCTTGTAATATGCATGATAACTATCCCAAGGAAGCCTGGGAGGAGTTTCATAAATATCTTTCAAGTTTTGAAGGACGTGACACAATAATGAAATCAGAGAGGCGGTATCATGCAGCTTTAATGTTGAAGTCATGTTGTTTGAAAAATCTTAAAATCGGAGAAATTATACATATGCTGCAGCTGGCAATCGATAAGAGACGGTGGCTATCCCATCATCAGTCAGGGTGGCAGCCCTTATCTATTACAACTTACAGTAGACCCCTGTGACAGATTTGGGACTTCAAGTGTGAATCCTGGGAGTCATTTTACATTGCAGGCATACATAGCAAATACAGAAGTATATTTTCTACATTTACATATAATATATGTAGATACACTACATATATGCAGAATGTTCAATATCTATGCAGAATGCTTGGAGTATTTTTCTGATAGGCCCAAGCTGAGGAGTTTAGTTATAAGTTGGTATGTAGTATTGGCAAATTCATTCTGCTCCCAGAAGCACAGTATGCGGGACTCTGGCTGGTATACATCAGGGTGATCAAGGTTAGGCCATACTTTTGCTTATTTTAATCCAGAGCCTAAATCATGGCCTTGGTTAGTTTAACATAACTTGTCTACATTTCTTGCAATGTAATCGTTCATTTTATAGCTTGTAGTTCCTTCAAACATATCAACAAATAGAGTGCAGTTAGACAAAATGCCTCGTCTTCAATAGTATTTGGGAATGGTGTACGACTTAACCAGAGTTCTAAGGTATTGCTTGAGATTTCTGTGAATATGACTATTGGTGTCATCTATCTGGCTTTTGCCGACTGTCTGGGAATATCTGGGATCTGCAACATTATAACAGTGAAAATAAAATCCTGCACTGATCTTCTAGATGCAGAACGTGTGGACAACTGGATGTATAAAGATGCTGCCACTATGAAGAAGCTGGCTATCATCTAAGAAGTGGATTGTCATGCTGTGTACAATGCTTGGTTGTGGATGCCAGGTAGAATTCCAGGAGGCTGAAGTAGAGGAATTCATTCAGCTCCTGCAATGAAGCATTATCATTGTTGCTCCCATTATTTGCCTTTCAGTGGTTTGCTGGAAGACAGATGCGATATTGTTTGATTCAATCAATGTATGGGTGTGTTAAGGAAAAACTAGTTAAAACTGTTCTGTTCCAGTCTTGACATCAGCTGGATATGGTCTTTATATATTAGTGCTGTGGTCATTTCATTGCAAAATGATGGTAACTGGTTGCATGATCATCACAGTTTAGTAGTAGTATTGTAATTTAGCTTGTGTTGATGAAGCTTCAATACCAGAAATTACTATCTTTCAGTTTGCCAGTGAGAATATATAACTGGCTTATATCAGTTTTGTATTGTATCTGCCATTAGCAGGGGCTCATGTGAATCTCGGAGGGACTGCTTACCAAAGTCTCCTGGTGATAAACTTATCATACTTTTATGCTGAGTTGTTTCTTTAATTAAGTTGTAGCTTGAACCTGTTGAATTTTAAACGCTATACAATGGCACCTTACATTTTTTT

Ace file of the UniGene sp_v3.0_unigene5422 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFQ6_RICCO	-	-	2.0e-32	30%
FL-Next	tr=Nucleic acid binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	30%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RFQ6

Fln msg: your sequence is shorter than subject: 403 - 703

Fln protein: VVTFAVITLEANFRSNSHVSVLGNSNAMGALPSLHNHIAVSGHPNGQAHSGNSNHFPGMKFPVITSEGNFPAHSHFSALENTNPMGTLSSLQHSMNVHYNNAKQFPTDPNSSINPSMKFSSFPPPHGKGYGAERNPFHPEVQPDIFPNPMPNLRPPITSSLSMENLPVSRTATSFDSGTIQQSHNVQGGCYVSNQMHQKISPEQTPTNPGNLNLNTSAQVHPIGRWLLPPEHNDTGAQIRIILQAIETLKQNMMVPSIGNIEDCIKYQEMHISNFDIHELLGKAVEQKEIVIMRAGGASPLYLPRATSLWKCVDPCNMHDNYPKEAWEEFHKYLSSFEGRDTIMKSERRYHAALMLKSCCLKNLKIGEIIHMLQLAIDKRRWLSHHQSGWQPLSITTYSRPL*

Protein Length: 404

Fln nts: CGTCGTGACCTTTGCTGTCATAACATTGGAGGCGAACTTTCGATCCAATTCACATGTTAGTGTGCTGGGTAATTCTAATGCTATGGGAGCCTTGCCCTCTTTACATAACCATATAGCAGTGTCAGGGCATCCAAATGGGCAGGCACATTCTGGTAATTCAAATCACTTTCCAGGAATGAAATTTCCTGTCATAACATCTGAAGGTAACTTTCCAGCGCATTCACATTTTAGTGCATTGGAAAATACTAATCCTATGGGGACTCTATCCTCTTTACAACACTCTATGAATGTTCACTATAATAATGCTAAGCAGTTTCCAACTGACCCCAATTCTTCTATCAACCCATCTATGAAGTTCAGCTCATTTCCTCCTCCTCACGGGAAAGGTTATGGAGCTGAAAGAAATCCATTTCATCCTGAAGTGCAGCCAGATATTTTTCCTAACCCAATGCCTAATCTTCGTCCACCTATTACAAGTAGTTTATCTATGGAGAACCTTCCCGTATCAAGGACAGCCACCTCTTTTGACTCGGGGACTATACAACAAAGTCATAATGTACAAGGTGGATGTTATGTTTCAAATCAAATGCATCAAAAAATTTCTCCAGAACAGACACCTACTAATCCAGGAAATTTAAATCTAAACACCTCTGCTCAGGTGCATCCAATAGGAAGATGGCTGCTACCTCCAGAGCATAACGATACTGGGGCTCAAATAAGGATTATTTTGCAGGCCATAGAGACATTGAAACAGAATATGATGGTACCTTCAATAGGTAATATTGAAGATTGCATAAAATATCAAGAGATGCATATTTCTAATTTTGACATCCATGAGTTATTGGGGAAGGCTGTTGAGCAAAAGGAAATTGTAATAATGAGGGCTGGCGGAGCATCCCCGTTATATCTTCCACGTGCAACTAGTCTTTGGAAATGTGTGGATCCTTGTAATATGCATGATAACTATCCCAAGGAAGCCTGGGAGGAGTTTCATAAATATCTTTCAAGTTTTGAAGGACGTGACACAATAATGAAATCAGAGAGGCGGTATCATGCAGCTTTAATGTTGAAGTCATGTTGTTTGAAAAATCTTAAAATCGGAGAAATTATACATATGCTGCAGCTGGCAATCGATAAGAGACGGTGGCTATCCCATCATCAGTCAGGGTGGCAGCCCTTATCTATTACAACTTACAGTAGACCCCTGTGA___CAGATTTGGGACTTCAAGTGTGAATCCTGGGAGTCATTTTACATTGCAGGCATACATAGCAAATACAGAAGTATATTTTCTACATTTACATATAATATATGTAGATACACTACATATATGCAGAATGTTCAATATCTATGCAGAATGCTTGGAGTATTTTTCTGATAGGCCCAAGCTGAGGAGTTTAGTTATAAGTTGGTATGTAGTATTGGCAAATTCATTCTGCTCCCAGAAGCACAGTATGCGGGACTCTGGCTGGTATACATCAGGGTGATCAAGGTTAGGCCATACTTTTGCTTATTTTAATCCAGAGCCTAAATCATGGCCTTGGTTAGTTTAACATAACTTGTCTACATTTCTTGCAATGTAATCGTTCATTTTATAGCTTGTAGTTCCTTCAAACATATCAACAAATAGAGTGCAGTTAGACAAAATGCCTCGTCTTCAATAGTATTTGGGAATGGTGTACGACTTAACCAGAGTTCTAAGGTATTGCTTGAGATTTCTGTGAATATGACTATTGGTGTCATCTATCTGGCTTTTGCCGACTGTCTGGGAATATCTGGGATCTGCAACATTATAACAGTGAAAATAAAATCCTGCACTGATCTTCTAGATGCAGAACGTGTGGACAACTGGATGTATAAAGATGCTGCCACTATGAAGAAGCTGGCTATCATCTAAGAAGTGGATTGTCATGCTGTGTACAATGCTTGGTTGTGGATGCCAGGTAGAATTCCAGGAGGCTGAAGTAGAGGAATTCATTCAGCTCCTGCAATGAAGCATTATCATTGTTGCTCCCATTATTTGCCTTTCAGTGGTTTGCTGGAAGACAGATGCGATATTGTTTGATTCAATCAATGTATGGGTGTGTTAAGGAAAAACTAGTTAAAACTGTTCTGTTCCAGTCTTGACATCAGCTGGATATGGTCTTTATATATTAGTGCTGTGGTCATTTCATTGCAAAATGATGGTAACTGGTTGCATGATCATCACAGTTTAGTAGTAGTATTGTAATTTAGCTTGTGTTGATGAAGCTTCAATACCAGAAATTACTATCTTTCAGTTTGCCAGTGAGAATATATAACTGGCTTATATCAGTTTTGTATTGTATCTGCCATTAGCAGGGGCTCATGTGAATCTCGGAGGGACTGCTTACCAAAGTCTCCTGGTGATAAACTTATCATACTTTTATGCTGAGTTGTTTCTTTAATTAAGTTGTAGCTTGAACCTGTTGAATTTTAAACGCTATACAATGGCACCTTACATTTTTTT

Fln Alignment:

Contig5422___QAHSGNSNHF-PGMKFPVITSEGNFPAHSHFSALENTNPMGTLSSLQHSMNVHYNNAKQF--PTDPNSS-INPSMKFSSFPPPHGKGYGAERNPFHPEVQPDIFPNPMPNLRPPITSSLSMENLPVSRTATSFDSGTIQQS-------------------HNVQGGCYVSNQ---MHQKISPEQXXXXXXXXXXXTSA--QVHPIGR-WLLP--PEHND-TGAQIRIILQAIETLKQNMMVPSIGNIEDCIKYQEMHISNFDIHELLGKAVEQKEIVIMRAGGASPLYLPRATSLWKCVDPCNMH-DNYPKEAWEEFHKYLSSFEGRDTIMKSERRYHAALMLKSCCLKNLKIGEIIHMLQLAIDKRRWLSHHQSGWQPLSIT
B9RFQ6______________QEDQPNSNSYQPGPYVPKVTVSGPSP---------NFNPGSPNFTWSDVTNVRDNHQSHFTQPLRPNASAMQPDFAAGNMYPPNFQ--------IHAPLMPPR-PNGTTFTSEPPTNVPDIGNLHISGYPTSFHNPPNAQRRNGEQKHDAKRKAPKSVNLNNSQNGYTTQNNPSGYHETVNNRYPGGSEYPPSSSSATATEVAPVNVIWGMPGCPKPSEYVQGLIGVILLALNTLKSEKIMPTEANIADCIRYGDPKHRNTDIKKALESAIEQ-QMVMKQNLGAVQLYVGKNEKLWRCVNPIGGSLKEYPKATWDEIQKFLASSAGRSAIMSSQCRYEAATIIKSMCLKELALGNILQILNMVIALKKWIIHHQSGWQPLTIT

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
881			83	16	0.994512
883	83			16	0.994512
1123	14	85			0.993533
1136	33		66		1.0
1140	66			33	1.0
1141	75		25		0.996473
1222		33	66		0.997452
1223		33		66	0.997452
1403	25			25	0.995533
1569	20			80	0.995493
1876	14			85	0.993533
1894			16	83	0.994512
1900	87	12			0.992554
1901		12		87	0.992554
1902		12		87	0.992554
2018		14		85	0.993533
2020			85	14	0.993533
2021			85	14	0.993533
2072		25		75	0.996473
2177	33			66	1.0
2238	88			11	0.923564
2242	11			88	0.923564
2394			85	14	0.993533
2396	14		85		0.993533
2397		85	14		0.993533
2398	85			14	0.993533
2401	14		85		0.993533
2403	14			85	0.993533
2404		71	28		1.0
2408	16			83	0.994512
2409	83		16		0.994512
2413		16		83	0.994512
2414			33	66	1.0
2416		16	16		0.988813
2417			83	16	0.994512
2418	80		20		0.995493
2420		20		80	0.995493
2421	20			80	0.995493
2422	80		20		0.995493
2425	20	80			0.995493
2428		80	20		0.995493
2429	80			20	0.995493
2433			20	80	0.995493
2435	80	20			0.995493
2436		80	20		0.995493
2450		75		25	0.996473
2457			25	75	0.996473
2458	25	75			0.996473
2461	25	75			0.996473
2462			25	75	0.996473
2467			25	75	0.996473
2470		25		75	0.996473
2472		33		66	0.997452
2476	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain