SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5416

Length: 2235 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene5416
ATTCACTAGGCAACAATTACCCAGGTTGCAAAATTTCATTCTGCTGCTTTCCTTCTCCCTTAAAACGTAATGATCTTTGCTTCTCACTGAATCTTTCACGTGACTTCATCTGGTTGCAACCAAAGCAGAAACCAATCTGTTTGGCAAACTGCTCTGAGAAGGGACGAACTGTTGCGGGAGGGTTAACGGTTGCTTTCAGCACTGGGTGACGGAAAACCTTCAGGATTTTTATGCCGACGGAAGATAAGATTGTTGTACCAGAATGTTTCTTCTATTTCGGGAATTTTGTTTATGCTGGTCACATAATTCAGAGTTGTAGTTGTTATCTAACCTGAGAAGGTGGTTCAGACTCCACAGCCCTTTTGTTCTTACTCAATTCGGGGATTTATGGTGTTTGTATTTTAAGACCGTTGGGAATTGAATTTGTATAAAATGGTGCAAGCAAAGCTTTAGATTGGACCCACTTTATTCAGTGATAAGTATTATCTGGGCGAATGAAAGCAACAAGAAAGATGGTACACAAACATGGGAAATCAACTGCCTTAAGTTGTAATGCAGGAAGCAGGTGTTCCTTGTCTGCTATAATCTGGAGTTTGGCTGCATGGATACTATTGATTCATGCCTACAACACCTTAACTCCATCAAATTCTAACAAAGTAGATTCTCAGGTGCAACAGTATCGCCTTTCCATGTACAGAGAACATGAAGATATAGAGGATAGGGGTTTTGAAGTCAAACAAAGAGGCAAAAAATTTATCTCCCCAGCAGGAAAACACAGGGGAAGGAGACATACCCCAGTAGATGATTTTCTTGATGTCACATCTCAAAGAAGATCCCTTTACTTTCCAGAGAAAAATCTTGCAGTGAACCCTTTGAAGACTGAAGATAGCAGAAAGTACTACTTCTATCCTGGCAGAGAATGGTGTGACACAGACAGCAGGCCCATACAGGCACATGGAGGAGGAATAATTTATGTTGAAGACACTCAGACCTTCTACTGGTATGGAGAGAATAAAGATGGTCGAAGCTACCGTATGCACAGGAAAGGAACTGCACGAGTGGATATCATAGGCGTTAATTGCTACTCATCAAAGGACTTGTGGACATGGAAGAATGAAGGGGTTGTTCTACCAGGCGAGAAAGTTAATAAGACGCATGACCTGTATGTCAGCAATGTGCTTGAGAGGCCCAAAGTGATTTATAATGATCACACCAAACAATATGTAATGTGGATGCACATTGACAATGCTAACTATTCCAAAGCTTCTGTTGGTGTGGCAGTCAGTTCCTCCCCCACTGGGCCATTCCATTATCTTGGCAGCAAACAGCCACATGGTTTTGATAGCCGAGATATGACAGTATTTAAAGATGACGATGGTCAAGCTTATATTGTCTATTCATCAGAAGACAATAGTGAATTGCATATTGGGCAGTTGACAGAAGACTACAAGGATCTTACTAAAGTCATGCGAAGGGCTTTGGTTGGAGAGCATAGAGAGGCACCTGCTGTTTTCAAGCACAGGGGGCTATATTATATGATCACTTCTGGTTGCACTGGCTGGGCCCCAAATACAGCTTTGGCTCATTCAGCAGAGTCTATGCTAGGACCTTGGGAAACATTGGGGAATCCATGCATGGGGGGTAATGAAGATTTTAGAAGAACTACATTTTTTGCCCAGGGAACGTTTGTTTTACCTCTTCCTGGCATGCCTTATACATTTATATTTATGGCAGATCGATGGAACCCAGCTGAATTAAGAGACTCACGTTATGTTTGGTTGCCTCTCACAATGGATGGGCCTGCAGACGAGCCATTGGAGGATGATTTTGAGTTCCCTCTGTGGTCAAGGGTGTCTATTTATTGGCATAAGCAATGGAAGCTTCCAGAAGGATGGAATTCACCATTGCCCAATCAAACTAGTTAGTGATAGATAGTCTGTATTCTAATAACATTACATGATTCCTAGGTTACTGCATTCTTGGTCATTTGCAATGGCCAGTATATTAGCGCTGTGACAAGTGCATGTTCCAATAGTACCGTCTATATTTAGCAAACATAATTTCAAAAGAAAAACTATTGGACAGAAGCCATCTAACACCATTTGCTTTCTTTAATGAAAAAGCTGATTCTACCACATATCCTAAACCAAAAGTCTACAGCTCTTGTAAAAGTTGGTCTATCCAGCAAATGATTAATAGAAATTACTTGCTGTCTTCAAGTGCAATTAAACCTTT

Ace file of the UniGene sp_v3.0_unigene5416 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucanase, putative n=1 Tax=Ricinus communis RepID=B9SH08_RICCO	-	-	0.0	57%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	62%

Source	Gene names
Sma3	At3g49880; At5g67540; Os01g0879400; Os12g0406100; OsI_04657; OsI_38068; OsJ_04287; OsJ_35850; P0018C10.27; P0471B04.38; PHYPADRAFT_154078; POPTRDRAFT_209034; POPTRDRAFT_945502; RCOM_0580450; T16K5.230; THAPSDRAFT_14637;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Ribosomal protein S3Ae	IPR001593	-	-
Sma3	Glycoside hydrolase, family 43	IPR006710	-	-
Sma3	Ribosomal protein S3Ae, conserved site	IPR018281	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49880.1	glycosyl hydrolase family protein 43 chr3:18496907-18498398 FORWARD LENGTH=466	62%
RefSeq	Arabidopsis thaliana	NP_190557.1	glycosyl hydrolase family protein 43 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002306513.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1LH58

Fln msg:

Fln protein: MKATRKMVHKHGKSTALSCNAGSRCSLSAIIWSLAAWILLIHAYNTLTPSNSNKVDSQVQQYRLSMYREHEDIEDRGFEVKQRGKKFISPAGKHRGRRHTPVDDFLDVTSQRRSLYFPEKNLAVNPLKTEDSRKYYFYPGREWCDTDSRPIQAHGGGIIYVEDTQTFYWYGENKDGRSYRMHRKGTARVDIIGVNCYSSKDLWTWKNEGVVLPGEKVNKTHDLYVSNVLERPKVIYNDHTKQYVMWMHIDNANYSKASVGVAVSSSPTGPFHYLGSKQPHGFDSRDMTVFKDDDGQAYIVYSSEDNSELHIGQLTEDYKDLTKVMRRALVGEHREAPAVFKHRGLYYMITSGCTGWAPNTALAHSAESMLGPWETLGNPCMGGNEDFRRTTFFAQGTFVLPLPGMPYTFIFMADRWNPAELRDSRYVWLPLTMDGPADEPLEDDFEFPLWSRVSIYWHKQWKLPEGWNSPLPNQTS*

Protein Length: 478

Fln nts: ATTCACTAGGCAACAATTACCCAGGTTGCAAAATTTCATTCTGCTGCTTTCCTTCTCCCTTAAAACGTAATGATCTTTGCTTCTCACTGAATCTTTCACGTGACTTCATCTGGTTGCAACCAAAGCAGAAACCAATCTGTTTGGCAAACTGCTCTGAGAAGGGACGAACTGTTGCGGGAGGGTTAACGGTTGCTTTCAGCACTGGGTGACGGAAAACCTTCAGGATTTTTATGCCGACGGAAGATAAGATTGTTGTACCAGAATGTTTCTTCTATTTCGGGAATTTTGTTTATGCTGGTCACATAATTCAGAGTTGTAGTTGTTATCTAACCTGAGAAGGTGGTTCAGACTCCACAGCCCTTTTGTTCTTACTCAATTCGGGGATTTATGGTGTTTGTATTTTAAGACCGTTGGGAATTGAATTTGTATAAAATGGTGCAAGCAAAGCTTTAGATTGGACCCACTTTATTCAGTGATAAGTATTATCTGGGCGA_-_ATGAAAGCAACAAGAAAGATGGTACACAAACATGGGAAATCAACTGCCTTAAGTTGTAATGCAGGAAGCAGGTGTTCCTTGTCTGCTATAATCTGGAGTTTGGCTGCATGGATACTATTGATTCATGCCTACAACACCTTAACTCCATCAAATTCTAACAAAGTAGATTCTCAGGTGCAACAGTATCGCCTTTCCATGTACAGAGAACATGAAGATATAGAGGATAGGGGTTTTGAAGTCAAACAAAGAGGCAAAAAATTTATCTCCCCAGCAGGAAAACACAGGGGAAGGAGACATACCCCAGTAGATGATTTTCTTGATGTCACATCTCAAAGAAGATCCCTTTACTTTCCAGAGAAAAATCTTGCAGTGAACCCTTTGAAGACTGAAGATAGCAGAAAGTACTACTTCTATCCTGGCAGAGAATGGTGTGACACAGACAGCAGGCCCATACAGGCACATGGAGGAGGAATAATTTATGTTGAAGACACTCAGACCTTCTACTGGTATGGAGAGAATAAAGATGGTCGAAGCTACCGTATGCACAGGAAAGGAACTGCACGAGTGGATATCATAGGCGTTAATTGCTACTCATCAAAGGACTTGTGGACATGGAAGAATGAAGGGGTTGTTCTACCAGGCGAGAAAGTTAATAAGACGCATGACCTGTATGTCAGCAATGTGCTTGAGAGGCCCAAAGTGATTTATAATGATCACACCAAACAATATGTAATGTGGATGCACATTGACAATGCTAACTATTCCAAAGCTTCTGTTGGTGTGGCAGTCAGTTCCTCCCCCACTGGGCCATTCCATTATCTTGGCAGCAAACAGCCACATGGTTTTGATAGCCGAGATATGACAGTATTTAAAGATGACGATGGTCAAGCTTATATTGTCTATTCATCAGAAGACAATAGTGAATTGCATATTGGGCAGTTGACAGAAGACTACAAGGATCTTACTAAAGTCATGCGAAGGGCTTTGGTTGGAGAGCATAGAGAGGCACCTGCTGTTTTCAAGCACAGGGGGCTATATTATATGATCACTTCTGGTTGCACTGGCTGGGCCCCAAATACAGCTTTGGCTCATTCAGCAGAGTCTATGCTAGGACCTTGGGAAACATTGGGGAATCCATGCATGGGGGGTAATGAAGATTTTAGAAGAACTACATTTTTTGCCCAGGGAACGTTTGTTTTACCTCTTCCTGGCATGCCTTATACATTTATATTTATGGCAGATCGATGGAACCCAGCTGAATTAAGAGACTCACGTTATGTTTGGTTGCCTCTCACAATGGATGGGCCTGCAGACGAGCCATTGGAGGATGATTTTGAGTTCCCTCTGTGGTCAAGGGTGTCTATTTATTGGCATAAGCAATGGAAGCTTCCAGAAGGATGGAATTCACCATTGCCCAATCAAACTAGTTAG___TGATAGATAGTCTGTATTCTAATAACATTACATGATTCCTAGGTTACTGCATTCTTGGTCATTTGCAATGGCCAGTATATTAGCGCTGTGACAAGTGCATGTTCCAATAGTACCGTCTATATTTAGCAAACATAATTTCAAAAGAAAAACTATTGGACAGAAGCCATCTAACACCATTTGCTTTCTTTAATGAAAAAGCTGATTCTACCACATATCCTAAACCAAAAGTCTACAGCTCTTGTAAAAGTTGGTCTATCCAGCAAATGATTAATAGAAATTACTTGCTGTCTTCAAGTGCAATTAAACCTTT

Fln Alignment:

Contig5416___KMVHKHGKSTALSCNAGSRCXXXXXXXXXXXXXXXIHAYNTLTPSNSNKVDSQVQQYRLSMYREHEDIEDRGFEVKQ-RGKKFISPAGKHRGRRHTPVDDFLDVTSQRRSLYFPEKNLAVNPLKTEDSRKYYFYPGREWCDTDSRPIQAHGGGIIYVEDTQTFYWYGENKDGRSYRMHRKGTARVDIIGVNCYSSKDLWTWKNEGVVLPGEKVNKTHDLYVSNVLERPKVIYNDHTKQYVMWMHIDNANYXXXXXXXXXXXSPTGPFHYLGSKQPHGFDSRDMTVFKDDDGQAYIVYSSEDNSELHIGQLTEDYKDLTKVMRRALVGEHREAPAVFKHRGLYYMITSGCTGWAPNTALAHSAESMLGPWETLGNPCMGGNEDFRRTTFFAQGTFVLPLPGMPYTFIFMADRWNPAELRDSRYVWLPLTMDGPADEPLEDDFEFPLWSRVSIYWHKQWKLPEGWN
I1LH58______________RMRNKNRKPTTLRCNVGSRCSTYVVILSLLGCLFLLHLYTLIRHRDRNGGESLLRISNHPQFHELQEVEEEDVQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPGKKIAIDPMQTAVNESYYYYPGRIWLDTDGNPIQAHGGGIIYDKRSRTYYWYGEYKDGPTYQIHKKGAARVDIIGVGCYSSKDLWTWKHEGIVLAAEETDETHDLHTSNVLERPKVIYNERSGKFVMWMHIDDANYTKAAVGVAISDTPDGPFDYLGSQRPHGYESRDMTVFKDDDGVAYIIYSSEDNSELHIGPLTEDYLNVTSVMRRILVGQHREAPALFKHQGTYYMITSGCTGWAPNEALAHAAESILGPWETVGNPCIGGNKMFRLTTFFAQSTFVVPLPGFPGSFIFMADRWNPANLRDSRYVWLPLIVAGPVDQPLEYSFEFPLWSRVSIYWHRKWRLPQGWN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1309		85		14	0.993533
1316		14		85	0.993533
1564	33		66		0.997452
1748		85	14		0.993533
1760		33		66	1.0
1761			20	80	0.995493
1764	20	80			0.995493
1766		80		20	0.995493
1767	20			80	0.995493
1771		20		80	0.995493
1773	80			20	0.995493
1774	80			20	0.995493
1781		75		25	0.996473
1829		75		25	0.996473
2152		50	50		1.0
2153	50			50	1.0
2159	50	50			1.0
2162	50	50			1.0
2163	33	66			0.997452
2166			66	33	0.997452
2167	33		66		0.997452
2168	33			66	0.997452
2169	33	66			0.997452
2171		66		33	0.997452
2172			66	33	0.997452
2174		66		33	0.997452
2175	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain