SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5403

Length: 1578 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5403

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Prp8 binding protein [Arabidopsis thaliana] gb\|AAB64029.1\| putative splicing factor [Arabidopsis thaliana] gb\|AAM13181.1\| putative splicing factor [Arabidopsis thaliana] gb\|AAP68267.1\| At2g43770 [Arabidopsis thaliana] gb\|AEC10322.1\| Prp8 binding protein [	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	89%
Sma3	Chromosome chr5 scaffold_72, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00034694001;

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43770.1	Transducin/WD40 repeat-like superfamily protein chr2:18134272-18135303 REVERSE LENGTH=343	83%
RefSeq	Arabidopsis thaliana	NP_181905.1	Prp8 binding protein [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002326058.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HB26

Fln msg:

Fln protein: MMSLKRGFEESLVPAKRQKTELSTVTYGDGPRRTSSLESPIMLLTGHHAAIYTMKFNPTGTVIASGSHEREIFLWNVHGDCKNFMVLKGHKNAILDLHWTTDGCQIISASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFPDKYQITAVGFSDAADKIYSGGIDNEIKVWDLRRGEVTMRLQGHTDTITGMQLSSDGSYLLTNSMDCSLRIWDMRPYAPQNRCVKILTGHQHNFEKNLLKCSWSSDGSKVTAGSADRMVYIWDTTTRRILYKLPGHTGSVNETGFHPTQPIIGSCSSDKQIYLGEIEPNVGYQAVI*

Protein Length: 350

Fln nts: ATGGGGGCACAGTATACACTTTTGATCATTTGTATTAATTGAAGGGTATTTGAGATTCTTGGATATGTTGTGTCACAGATGAAACACATTTCTCGCTAAACAGAGCCAAATTCAGCTTCTGGCTGACGCTGCAACAGGTTGGGTGATCCAGAGCTTCAATTTGAATATTCAAAGCATTTTTTAGCTCAAAGTTCTACCGTTTCCAGATTAAGAAGTTAGGTGAAAAGAAATACTTTTCCTTTTTCTTAAGAAGTATCTTGATTTAAGAAACAGA_-_ATGATGTCTCTAAAAAGAGGATTCGAAGAATCCTTGGTACCAGCCAAAAGACAGAAAACAGAGTTGTCCACTGTCACATATGGTGATGGGCCTCGACGGACATCCAGTTTGGAATCCCCAATCATGCTGCTGACTGGGCACCATGCAGCTATATATACAATGAAGTTCAATCCAACAGGAACAGTGATTGCATCTGGATCACATGAGAGGGAGATATTTTTGTGGAATGTGCATGGGGATTGCAAGAATTTTATGGTCTTGAAAGGTCACAAGAATGCAATTTTGGATCTGCACTGGACAACCGATGGCTGCCAAATCATATCAGCAAGCCCTGATAAGACTCTTCGTGCCTGGGATGTTGAGACAGGAAAGCAAATAAAAAAAATGGCAGAGCACTCATCCTTTGTTAATTCTTGTTGTCCTTCACGGCGTGGGCCCCCTCTTGTAGTTAGTGGATCTGATGATGGGACTGCAAAGCTTTGGGATTTACGTCACAGAGGAGCTATTCAAACCTTTCCAGACAAATACCAAATCACAGCTGTTGGGTTCTCTGATGCCGCAGACAAGATATACTCTGGTGGAATAGATAATGAAATTAAGGTGTGGGACCTTAGAAGAGGTGAGGTCACAATGCGACTCCAAGGCCACACAGACACAATTACAGGCATGCAGTTAAGTTCTGATGGCTCTTACCTCCTGACTAATTCGATGGATTGTTCTCTTCGTATTTGGGATATGCGTCCATATGCCCCTCAGAATAGATGTGTGAAAATCTTAACAGGCCATCAACACAACTTTGAAAAAAACCTTTTGAAATGTAGTTGGTCTTCTGATGGAAGTAAAGTCACGGCTGGTAGTGCAGATCGTATGGTTTATATATGGGACACAACCACTCGACGTATATTGTACAAGCTCCCAGGCCACACTGGGTCTGTAAATGAGACTGGTTTCCATCCTACACAGCCAATTATTGGATCATGTAGTAGTGACAAGCAGATATACTTGGGGGAGATTGAGCCTAATGTTGGGTATCAAGCTGTAATTTAG___ACATGATTCAAAGTCTAGACATTAATGTTTTGGAACTCTTTTTTCGAATTTGTGCCTATTGAATCACTTTAGTTCAAGCCATTGCAAGAGCAGAGTTGAATGGTCTTGCGATGTGCCTGCCCTAGGGAGTTTACTTGATTTTTTTTGCTGTTTTTAGAAATGAAATTTATTAATCTCAAGAAAGGGATTCCATAGTTGAACTTTGTAGAAATATTTTTGAAACGTTATTTTTAGTCTGACTGTCTTCAAATTTCTAT

Fln Alignment:

Contig5403___DGPRRTSSLESPIMLLTGHHAAIYTMKFNPTGTVIASGSHEREIFLWNVHGDCKNFMVLKGHKNAILDLHWTTDGCQIISASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRHRGAIQTFPDKYQITAVGFSDAADKIYSGGIDNEIKVWDLRRGEVTMRLQGHTDTITGMQLSSDGSYLLTNSMDCSLRIWDMRPYAPQNRCVKILTGHQHNFEKNLLKCSWSSDGSKVTAGSADRMVYIWDTTTRRILYKLPGHTGSVNETGFHPTQPIIGSCSSDKQIYLGEI
F6HB26______________NGKQRTSSLESPIMLLAGHQSAIYTMKFNPTGTVIASGSHEREIFLWYVHGDCKNFMVLKGHKNAILDLQWTTDGTQIISASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRRNEVTMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
225	88		11		0.923564
365		88		11	0.923564
651	16			83	0.994512
652	60			20	0.99255
862	12			87	0.992554
863	87			12	0.992554
864	87		12		0.992554
868	87		12		0.992554
967		80		20	0.995493
979			12	87	0.992554
984		12		87	0.992554
985			87	12	0.992554
986		12	87		0.992554
1054	83		16		0.994512
1057		83		16	0.994512
1235		84		15	0.999986
1238		83	16		0.999991
1393			90	10	0.90298
1394			20	80	0.999996
1441		90		10	0.90298
1443		90	10		0.90298
1444			10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain