SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5402

Length: 2110 nt

UniGene Fasta

>sp_v3.0_unigene5402
ATGGGGTGGTTGTAGATTGACAATTGGTGAAGAACCGGCGAATCATTGGACCGTCCACGCCTTCCAACGTCAGTGTTTCCGTCTGTGTCTTCTTGGAAATGACAGTGAACTGTCATGATAACGACCTTGCTTTAGATAGTAAGCCCGTCCATCATCTTCTCCGGACCCATTTCATGGTGCCGTCAATTTCCATCCAGGATCAGATGCGGAAACACATGGCCCAATCACAGCAATGCAGCAAGTAACTGGAATTCTCACTCGTCCTTTATACTGAATGGATGTGCTCTTACATTCAGGGCAGGTCTGCTATTTGTTTTGACCAAGGATCTAATTGAATGAAGGTGCAAACTAGCTGGTGACACAAAATATTTCACCTGGGTATTTGGAAAAAAATGGGGAGGAGAAACATGGAAGAGGAGGTGGAAGAGGCCAATCGGAGAATCGTGGAGGCAGAATCGGCTGCTATAGATGCTCATGTAAAGGTTGAAGAGTACGAAGCAATCTGTGAGCAGCTTACGACGCTCATCAAGGAGAAAGAAGATGCCATACAACAGCTCCAGAATGATGCCAGAAATGCCATCAAGGAAAAAGAAGCTGTCATTAAAGAACGCGATGAAGCCAGGGAGAAGCTCAAGAGGGGAGCGCCGCCGGGAAGGCGATTCACGCGCTATACCATCCAAGAACTCAAGGCTGCAACAGACAATTTCTCGGAGGATGCAGTAATTGGGGAAGGGTACTACGGCAAAGTTTACAGAGGCCAATTTCACGTTACTCCAGTAGCCATTAAAGTCTTGAAACTCAATTGGTTTCAGGGAAGCTCCCGATTTCACCGCGAGATGGATCGGTTAAGCAGTATCAAGCACCCTCGTTTGGTGATGTTAATGGGGGCTTGCACTGACGGAGGCTTCATTGTCTACGAATATATGCCCCGAGGAAGCTTAGAAGATCGGCTGCTCTGCAAAGGTGGGACTCCGCCAATTCCATGGTTCGACAGAATGCGTATCGCGGCAGAAGTCTGCGAGGGTTTGCTGTTCATGCACAGCTTACAGCCAGAGCCGATCTTTCACCACGATTTGAAACCCTCGAATATACTGTTAGACAATGATCTTGGCAGCAAAATCAGCGATTTCGGGCTCGTCCGTCTCGTTTCTGATCGTTCTCGGCTACAGTACCTTACTCCTGAGTCGGATGTTTACAGATTCGGAGCACTCATCCTGCAGCTTCTAGTCGGGGAGCCCACAATTGAGGAGGTTTACAAAATACTGGTCGAACGTGTGGGTGCAGCTCTTGCTGAAGAGGACGAGGAGGAGTTCAAGTATGTACTGGACGAGGATGCAAGATGGCCGCTGGAACAAGCAAGGAAACTGGCTGAGATCGCTTTAGAATGCACGGCCGAAAGCGGAAGGATAACCCTTCCGCAGGCAATGCAAAATTTAGAGAAAATCCTTGACTCTGTCAACAAGCTCGAATCTCCGCCTAAGCGATTCCTTCAAGTTCCCGAGGGTTTTCGCTGTCCGATCAGTTGGAACATTATGGACAACCCTTATATTGCTGAAGATGGACACTCATACGAGTTTGAGGCAATCAAAGCATGGCTTGACCAAGGCCATGACACTTCACCAGTGACTTTAGCCAAGCTCAAACATAAAAATGTCGTTCCCAATCGTTCACTTCGCTCCGTCATTGAGTACTGGCGCAACAAAACACAATTTTTCAACCGCGGATAGAACTATGCCTGAGAGTGAGAGGAATACCAACAAAATACCTAGCCCTGCCCTACATCTACAGGAGTAATAACATGTCGAATAAATGTTAAATTTTATGGTTCAGGCATATGACCAGAAGCTCTATATTAATGTATAGTTTTATTTTTCGAACATGTTGTTTTAATATCTTCTGAACCAAAAGCTTGCCAATAAAATATGTCATTGGCCATATGCAACATATACTCACAGATTCTGCACAATCCTGCTTTGATCATTGCTATCCAGTATTACAAAACCCCACTGTAAAGATGGAGCCCTCCACGGAATACGCTGTATAATAAGATCACAATAATATTTAGATTTATACTTTAGTGAAATTTACATGGAGGATGTGAAATCTATAT

Ace file of the UniGene sp_v3.0_unigene5402

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase; U box n=1 Tax=Medicago truncatula RepID=Q2HTK4_MEDTR	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	U box domain	IPR003613	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPB1

Fln msg:

Fln protein: MGRRNMEEEVEEANRRIVEAESAAIDAHVKVEEYEAICEQLTTLIKEKEDAIQQLQNDARNAIKEKEAVIKERDEAREKLKRGAPPGRRFTRYTIQELKAATDNFSEDAVIGEGYYGKVYRGQFHVTPVAIKVLKLNWFQGSSRFHREMDRLSSIKHPRLVMLMGACTDGGFIVYEYMPRGSLEDRLLCKGGTPPIPWFDRMRIAAEVCEGLLFMHSLQPEPIFHHDLKPSNILLDNDLGSKISDFGLVRLVSDRSRLQYLTPESDVYRFGALILQLLVGEPTIEEVYKILVERVGAALAEEDEEEFKYVLDEDARWPLEQARKLAEIALECTAESGRITLPQAMQNLEKILDSVNKLESPPKRFLQVPEGFRCPISWNIMDNPYIAEDGHSYEFEAIKAWLDQGHDTSPVTLAKLKHKNVVPNRSLRSVIEYWRNKTQFFNRG*

Protein Length: 446

Fln nts: ATGGGGTGGTTGTAGATTGACAATTGGTGAAGAACCGGCGAATCATTGGACCGTCCACGCCTTCCAACGTCAGTGTTTCCGTCTGTGTCTTCTTGGAAATGACAGTGAACTGTCATGATAACGACCTTGCTTTAGATAGTAAGCCCGTCCATCATCTTCTCCGGACCCATTTCATGGTGCCGTCAATTTCCATCCAGGATCAGATGCGGAAACACATGGCCCAATCACAGCAATGCAGCAAGTAACTGGAATTCTCACTCGTCCTTTATACTGAATGGATGTGCTCTTACATTCAGGGCAGGTCTGCTATTTGTTTTGACCAAGGATCTAATTGAATGAAGGTGCAAACTAGCTGGTGACACAAAATATTTCACCTGGGTATTTGGAAAAAA_-_ATGGGGAGGAGAAACATGGAAGAGGAGGTGGAAGAGGCCAATCGGAGAATCGTGGAGGCAGAATCGGCTGCTATAGATGCTCATGTAAAGGTTGAAGAGTACGAAGCAATCTGTGAGCAGCTTACGACGCTCATCAAGGAGAAAGAAGATGCCATACAACAGCTCCAGAATGATGCCAGAAATGCCATCAAGGAAAAAGAAGCTGTCATTAAAGAACGCGATGAAGCCAGGGAGAAGCTCAAGAGGGGAGCGCCGCCGGGAAGGCGATTCACGCGCTATACCATCCAAGAACTCAAGGCTGCAACAGACAATTTCTCGGAGGATGCAGTAATTGGGGAAGGGTACTACGGCAAAGTTTACAGAGGCCAATTTCACGTTACTCCAGTAGCCATTAAAGTCTTGAAACTCAATTGGTTTCAGGGAAGCTCCCGATTTCACCGCGAGATGGATCGGTTAAGCAGTATCAAGCACCCTCGTTTGGTGATGTTAATGGGGGCTTGCACTGACGGAGGCTTCATTGTCTACGAATATATGCCCCGAGGAAGCTTAGAAGATCGGCTGCTCTGCAAAGGTGGGACTCCGCCAATTCCATGGTTCGACAGAATGCGTATCGCGGCAGAAGTCTGCGAGGGTTTGCTGTTCATGCACAGCTTACAGCCAGAGCCGATCTTTCACCACGATTTGAAACCCTCGAATATACTGTTAGACAATGATCTTGGCAGCAAAATCAGCGATTTCGGGCTCGTCCGTCTCGTTTCTGATCGTTCTCGGCTACAGTACCTTACTCCTGAGTCGGATGTTTACAGATTCGGAGCACTCATCCTGCAGCTTCTAGTCGGGGAGCCCACAATTGAGGAGGTTTACAAAATACTGGTCGAACGTGTGGGTGCAGCTCTTGCTGAAGAGGACGAGGAGGAGTTCAAGTATGTACTGGACGAGGATGCAAGATGGCCGCTGGAACAAGCAAGGAAACTGGCTGAGATCGCTTTAGAATGCACGGCCGAAAGCGGAAGGATAACCCTTCCGCAGGCAATGCAAAATTTAGAGAAAATCCTTGACTCTGTCAACAAGCTCGAATCTCCGCCTAAGCGATTCCTTCAAGTTCCCGAGGGTTTTCGCTGTCCGATCAGTTGGAACATTATGGACAACCCTTATATTGCTGAAGATGGACACTCATACGAGTTTGAGGCAATCAAAGCATGGCTTGACCAAGGCCATGACACTTCACCAGTGACTTTAGCCAAGCTCAAACATAAAAATGTCGTTCCCAATCGTTCACTTCGCTCCGTCATTGAGTACTGGCGCAACAAAACACAATTTTTCAACCGCGGATAG___AACTATGCCTGAGAGTGAGAGGAATACCAACAAAATACCTAGCCCTGCCCTACATCTACAGGAGTAATAACATGTCGAATAAATGTTAAATTTTATGGTTCAGGCATATGACCAGAAGCTCTATATTAATGTATAGTTTTATTTTTCGAACATGTTGTTTTAATATCTTCTGAACCAAAAGCTTGCCAATAAAATATGTCATTGGCCATATGCAACATATACTCACAGATTCTGCACAATCCTGCTTTGATCATTGCTATCCAGTATTACAAAACCCCACTGTAAAGATGGAGCCCTCCACGGAATACGCTGTATAATAAGATCACAATAATATTTAGATTTATACTTTAGTGAAATTTACATGGAGGATGTGAAATCTATAT

Fln Alignment:

Contig5402___MGRR-NMEEEVEEANRRIVEAESAAIDAHVKVEEYEAICEQLTTLIKEKEDAIQQLQNDARNAIKEKEAVIKERDEAREKLKRGAPPGRRFTRYTIQELKAATDNFSEDAVIGEGYYGKVYRGQFHVTPVAIKVLKLNWFQGSSRFHREMDRLSSIKHPRLVMLMGACTDGGFIVYEYMPRGSLEDRLLCKGGTPPIPWFDRMRIAAEVCEGLLFMHSLQPEPIFHHDLKPSNILLDNDLGSKISDFGLVRLVSDRSRLQYLTPESDVYRFGALILQLLVGEPTIEEVYKILVERVGAALAEEDEEEFKYVLDEDARWPLEQARKLAEIALECTAESGRITLPQAMQNLEKILDSVNKLESPPKRFLQVPEGFRCPISWNIMDNPYIAEDGHSYEFEAIKAWLDQGHDTSPVTLAKLKHKNVVPNRSLRSVIEYWRNKTQFFNRG
B8LPB1______________MGRRKNLEQEMEEANQRIVEAESAAIEAHVKVEEYEGICEQLTTLLKDKEDAIQRLQKDAKNAIKEKEAAIKERDEARERLKRGAPPGRRFTRYTIQELKAATNNFSEDAVIGEGCYGIVYKGQFHVTPVAIKLLKVNWFEGSSRFQREMDRLSSIKHPRLVMLMGACPDGGFIIYEYMPRGSLEDRLRCKDGTPPLPWFDRMRIAAEICEGLLFMHSIQPEPIVHHDLKPSNILLDNDLGSKISDFGLVRLVSDRSRLQNLTPESDVYRFGILILQLLVGEPTIEPMFKILIESVAAALADDDEEEFKYVLDEDGRWPLEQARQLAEIALECTAESGRVSLPQAMQNLERILDSA-KLEPPPKQFLKVPEGFRCPISWNIMEKPYIAEDGHSYELEAIKAWLDQGHDTSPVTLAKLKHHNLVPNRSLRSVIEYWRNKTQFFNRG

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
519	33		66		0.997452
545	66	33			0.997452
837		75	25		0.996473
854			80	20	0.995493
1500		66	33		1.0
1507	14			85	0.993533
1508	14			85	0.993533
1510		85	14		0.993533
1511			85	14	0.993533
1637	87			12	0.992554
1638			87	12	0.992554
1895	12			87	0.999964
1941	14		85		0.993533
1957			20	80	0.995493
1998	80		20		0.995493
2086	25			75	0.996473
2087		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain