SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5399

Length: 2312 nt

UniGene Fasta

>sp_v3.0_unigene5399
ATGGGGGCCTCGCTCTCGATTTGAATTGAAGAGGTCTCTGTGGTGGGACGTTTATCAAATGCACTCGCAGGGCCATCACTCCCGTTTGTGAAGAACCAGCAGAAGAAGAAGTATCAGAAATGGACTCAGAAGAAAGCGGCGGCAGTCCAGTTGAGCCCAAGCAGAAAAAGAAGGCAAAGCCTAAAACTCCTGCTAAAGGCAAAGAAAGCGTTCTTACGCAAAAGTCCCCTGCAGAATTCTTCGCAGAAAACAAAAACATTGCTGGTTTTGATAACCCGGGCAAGAGTCTTTATACGACGGTGCGCGAGCTTGTGGAGAATGCACTTGATTCTACGGAGTCCGTTGGCGAACTTCCGGCAATTGAAGTTACTATAGAGGAGATTACTAAGTCCACTTTTAATACCATGATTGGGCTAATAGATCGGGAGCGGGTGGATGCAGCATTGTATGGTGATTTTGAATCTGAGAAGGCTCGTGAGAAACGTCTAGCTAAAGAAGCTCGTGAACAAGAGAAGCTGGCAAAGGTTGCTGCACTTGGGAAGAAGCCTAAAGAGATGTCCACTACAAAGAGTCAGAAAGCCCGGGGCGAGACATCATTTTTCAGGGTGACTTGTAAGGATAATGGAAAGGGAATGCCACACGATGACATCCCAAATATGCTTGGAAGAGTGCTTTCTGGAACAAAGTATGGGTTGAAACAAACTCGTGGAAAATTTGGACTAGGTGCAAAGATGGCGTTGATATGGTCCAAGATGAGTACTGGACTTCCAATAGACATTTATTCAGCAATGCAAGGCCAAAATTACCTATCATTTTGTAGGCTTGATATTGATATTCATAAAAATATTCCTCATGTTCATGTACATGAAAAGCGGGACAACAATGATAGATGGAATGGGGCAGAAATTCAAGTTACAATTGAAGGAAATTGGACAACTTATCGTTCAAAGATAATACAGTATATGCGCCAAATGGCTGTAATAACACCATATGCTCAGTTTCTCTTCCGATACATTTCAGCAACAGCGGACAAGAATGTCACAATAAGATTTGCACGAAGGACAGATGTGATGCCTCCAGTACCTATTGAAACGAACTATCATCCTTCTGCTGTAGATCTATTACTTATCAAGCGCCTTATTGCAGAGACATCGAAGCAGAACCTTATCCAGTTTCTCCAACATGAGTTTGTTAATATTAGCAAATCTTATGCTGATCGCTTAATTGGTGAGATGGGTCCAGATTTTACGCCCAAGATGGCTGTGAAAACTCTTTCATCTCAACAGATAGTTCGAATCCATCAACTCTTCCGGCAAGCTAAGTTTGATGATCCTAGTGGTGATTGTCTTAGTCCTGCAGGGGAATACAATCTTCGTCTTGGGATCATAAAAGAGCTACATCCAGACATGGTTGCAACATACGAGGGAAGTCCACATGTTTTTGAAGGTCATCCGTTTATCGTGGAGGCAGGGGTCAGTCTAGGTGGAAAAGATGTTAAGCAGGGCATCAATGTATTTAGATTTGCAAACCGCATTCCACTTTTGTTTGAACAAGGGGCAGATGTCGTCACAAGGACTGCTATGAAGCGGATCAATTGGAATAGCTATAAGATTAATCAGACACAAGATAAGATTGGTGTTTTTGTGAGCATTGTAAGTACAAAGATTCCCTTCAAGGGAACCGGCAAAGAATATATTGGAGATGACATAACAGAAATAGTTACTGCTGTCAAGGCTGCTATCCAACAATGTTGTGTTCAGTTGAAGTCAAAAATCGTTAGAAAACAACAAGCACGCGAGCGACAAGAGCGTAAACGAAACCTGACCAAGTACATACCTGATGCTTCACGTGCTATATATGAGGTGCTAAAAGATATCGTACAACTTAGGACACCGAAAAAGCCAAGATATGGGGATGTATATGAAGGAATACTCAACGGAGTATCATCCCGTGAGATTACAGAAACAACCTTGAGAGACAAGCTCGCCCAGCATGTTGAACAGGTTGATATTGAAATGGCACTTGAATATGCTACACAAAGTGGAATAACCCTGGAAGCTCGTGAGACTACGTATATACGTTCTTTGGAGGGAACTCAAAACTTTTATGACTTCCATAGTCCTGTTTGTGTTATTCGGTTGTTTCATTAGATGCAATGGCATCTATCTATTATATTCTCTCTATTAATATGTTGAACTTATGTAGTATTCTTTCTACTCATCTGTCCGCGAACAATTAATTGAATGGTTTAAAAGGGATTGATAATCAATGATATGTTCATTTTATACAAGTTTCTTTGTTTATCTACAAGG

Ace file of the UniGene sp_v3.0_unigene5399

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative topoisomerase VI subunit B [Oryza sativa Indica Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Chromosome chr6 scaffold_3, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00024669001;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA topoisomerase VI, subunit B, transducer	IPR015320	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20780.1	ATTOP6B, BIN3, HYP6, RHL3, TOP6B topoisomerase 6 subunit B chr3:7264025-7268498 REVERSE LENGTH=670	0.0	77%
RefSeq	Arabidopsis thaliana	NP_188714.2	DNA topoisomerase 6 subunit B [Arabidopsis thaliana]	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A810

Fln msg:

Fln protein: MDSEESGGSPVEPKQKKKAKPKTPAKGKESVLTQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSTESVGELPAIEVTIEEITKSTFNTMIGLIDRERVDAALYGDFESEKAREKRLAKEAREQEKLAKVAALGKKPKEMSTTKSQKARGETSFFRVTCKDNGKGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIDIYSAMQGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDRWNGAEIQVTIEGNWTTYRSKIIQYMRQMAVITPYAQFLFRYISATADKNVTIRFARRTDVMPPVPIETNYHPSAVDLLLIKRLIAETSKQNLIQFLQHEFVNISKSYADRLIGEMGPDFTPKMAVKTLSSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYEGSPHVFEGHPFIVEAGVSLGGKDVKQGINVFRFANRIPLLFEQGADVVTRTAMKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIVTAVKAAIQQCCVQLKSKIVRKQQARERQERKRNLTKYIPDASRAIYEVLKDIVQLRTPKKPRYGDVYEGILNGVSSREITETTLRDKLAQHVEQVDIEMALEYATQSGITLEARETTYIRSLEGTQNFYDFHSPVCVIRLFH*

Protein Length: 678

Fln nts: ATGGGGGCCTCGCTCTCGATTTGAATTGAAGAGGTCTCTGTGGTGGGACGTTTATCAAATGCACTCGCAGGGCCATCACTCCCGTTTGTGAAGAACCAGCAGAAGAAGAAGTATCAGAA_-_ATGGACTCAGAAGAAAGCGGCGGCAGTCCAGTTGAGCCCAAGCAGAAAAAGAAGGCAAAGCCTAAAACTCCTGCTAAAGGCAAAGAAAGCGTTCTTACGCAAAAGTCCCCTGCAGAATTCTTCGCAGAAAACAAAAACATTGCTGGTTTTGATAACCCGGGCAAGAGTCTTTATACGACGGTGCGCGAGCTTGTGGAGAATGCACTTGATTCTACGGAGTCCGTTGGCGAACTTCCGGCAATTGAAGTTACTATAGAGGAGATTACTAAGTCCACTTTTAATACCATGATTGGGCTAATAGATCGGGAGCGGGTGGATGCAGCATTGTATGGTGATTTTGAATCTGAGAAGGCTCGTGAGAAACGTCTAGCTAAAGAAGCTCGTGAACAAGAGAAGCTGGCAAAGGTTGCTGCACTTGGGAAGAAGCCTAAAGAGATGTCCACTACAAAGAGTCAGAAAGCCCGGGGCGAGACATCATTTTTCAGGGTGACTTGTAAGGATAATGGAAAGGGAATGCCACACGATGACATCCCAAATATGCTTGGAAGAGTGCTTTCTGGAACAAAGTATGGGTTGAAACAAACTCGTGGAAAATTTGGACTAGGTGCAAAGATGGCGTTGATATGGTCCAAGATGAGTACTGGACTTCCAATAGACATTTATTCAGCAATGCAAGGCCAAAATTACCTATCATTTTGTAGGCTTGATATTGATATTCATAAAAATATTCCTCATGTTCATGTACATGAAAAGCGGGACAACAATGATAGATGGAATGGGGCAGAAATTCAAGTTACAATTGAAGGAAATTGGACAACTTATCGTTCAAAGATAATACAGTATATGCGCCAAATGGCTGTAATAACACCATATGCTCAGTTTCTCTTCCGATACATTTCAGCAACAGCGGACAAGAATGTCACAATAAGATTTGCACGAAGGACAGATGTGATGCCTCCAGTACCTATTGAAACGAACTATCATCCTTCTGCTGTAGATCTATTACTTATCAAGCGCCTTATTGCAGAGACATCGAAGCAGAACCTTATCCAGTTTCTCCAACATGAGTTTGTTAATATTAGCAAATCTTATGCTGATCGCTTAATTGGTGAGATGGGTCCAGATTTTACGCCCAAGATGGCTGTGAAAACTCTTTCATCTCAACAGATAGTTCGAATCCATCAACTCTTCCGGCAAGCTAAGTTTGATGATCCTAGTGGTGATTGTCTTAGTCCTGCAGGGGAATACAATCTTCGTCTTGGGATCATAAAAGAGCTACATCCAGACATGGTTGCAACATACGAGGGAAGTCCACATGTTTTTGAAGGTCATCCGTTTATCGTGGAGGCAGGGGTCAGTCTAGGTGGAAAAGATGTTAAGCAGGGCATCAATGTATTTAGATTTGCAAACCGCATTCCACTTTTGTTTGAACAAGGGGCAGATGTCGTCACAAGGACTGCTATGAAGCGGATCAATTGGAATAGCTATAAGATTAATCAGACACAAGATAAGATTGGTGTTTTTGTGAGCATTGTAAGTACAAAGATTCCCTTCAAGGGAACCGGCAAAGAATATATTGGAGATGACATAACAGAAATAGTTACTGCTGTCAAGGCTGCTATCCAACAATGTTGTGTTCAGTTGAAGTCAAAAATCGTTAGAAAACAACAAGCACGCGAGCGACAAGAGCGTAAACGAAACCTGACCAAGTACATACCTGATGCTTCACGTGCTATATATGAGGTGCTAAAAGATATCGTACAACTTAGGACACCGAAAAAGCCAAGATATGGGGATGTATATGAAGGAATACTCAACGGAGTATCATCCCGTGAGATTACAGAAACAACCTTGAGAGACAAGCTCGCCCAGCATGTTGAACAGGTTGATATTGAAATGGCACTTGAATATGCTACACAAAGTGGAATAACCCTGGAAGCTCGTGAGACTACGTATATACGTTCTTTGGAGGGAACTCAAAACTTTTATGACTTCCATAGTCCTGTTTGTGTTATTCGGTTGTTTCATTAG___ATGCAATGGCATCTATCTATTATATTCTCTCTATTAATATGTTGAACTTATGTAGTATTCTTTCTACTCATCTGTCCGCGAACAATTAATTGAATGGTTTAAAAGGGATTGATAATCAATGATATGTTCATTTTATACAAGTTTCTTTGTTTATCTACAAGG

Fln Alignment:

Contig5399___GSPVEXXXXXXXXXXXXXXXXESVLTQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSTESVGELPAIEVTIEEITKSTFNTMIGLIDRERVDAALYGDFESEKAREKRLAKEAREQEKLAKVAALGKKPKEMSTTKSQKARGETSFFRVTCKDNGKGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIDIYSAMQGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDRWNGAEIQVTIEGNWTTYRSKIIQYMRQMAVITPYAQFLFRYISATADKNVTIRFARRTDVMPPVPIETNYHPSAVDLLLIKRLIAETSKQNLIQFLQHEFVNISKSYADRLIGEMGPDFTPKMAVKTLSSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYEGSPHVFEGHPFIVEAGVSLGGKDVKQGINVFRFANRIPLLFEQGADVVTRTAMKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIVTAVKAAIQQCCVQLKSKIVXXXXXXXXXXXXXNLTKYIPDASRAIYEVLKDIVQLRTPKKPRYGDVYEGILNGVSSREITETTLRDKLAQHVEQVDIEMALEYATQSGITLEARETTYIRSLEGTQNFYDFHSPVCVIRLF
D5A810______________GSPVEPKQKKKAKSKTPAKGKESVLTQKSPAEFFAENKNIAGFDNPGKSLYTTVRELAENALDSTESVAELPAIEVTIEEISKSTFNTMIGLIDRERVDAALYGDFESGKAREKRLAKEAREQERLAKSAALGKKPKEMSTTKSQKGRGETTFFRVTCKDNGRGMPHDDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIDIYSGMKGQNYLSFCRLDIDIHKNIPHVHVHEKRDNNDKWNGAEIQVTIEGNWTTYRSKIIQYMRQMAVITPYAQLLFRYVSATVDKNVTIRFARRTDVMPPVPIETNYHPSAVDLLLIKRLIAETSKQNLIQFLQHEFVNISKSHADRLIGEMGPDFTPKMAVKSLSSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYEGSPHVFEGHPFIVEAGISLGGKDVKQGINVFRFANRIPLLFEQGADVITRTAMKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIATSVKAAIQQCCVQLKSKIVRKQQARERQERKRNLTKYIPDASRAIYEVLKDIVQLRSPKKPRYGDVYEEILDRVSSREITETTLREKLAQHVEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCVIRLF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
904	10	90			0.90298
907	90			10	0.90298
957	90		10		0.90298
977			90	10	0.90298
980	10			90	0.90298
981			90	10	0.90298
991	10	90			0.90298
994	90			10	0.90298
1068		12	87		0.992554
1575	87			12	0.992554
1616		14		85	0.993533
1618	85			14	0.993533
2286	14			85	0.993533
2287		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain