SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5390

Length: 2511 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene5390
GGGACAGAGGTAAAATACCGACTGCCAGACACAACATTCTTCTTGACCTCTGCAAGCCTCATGGTTAAACCCTACATTCTGCAAACCCCAGTCCCCTTTTTATCATCAGCAAATCGTTTATTGCTCCAGTTTTAGAGCTGAAAATCGGAGGGAACGACGCATAATTCAGAGATGTATAGCAACAACGTCCGTAGGGAAATCGATAGACGAGGGGGCTTCAACACTGGCAGGGACAGATTCCGCAGGGCTGTCAGAAACGTTCCGAGGGAGAGGGATTGCAGGCCTTATGGTGAACACGATGCTGCTTATTTCAGCTCCTATGCCCATGTCGGGATTCACGAAGAAATGATCAAAGATCGTGTACGCACTGAAACATACAGAGCTGCCATACTACAACATCGAAATGCTATTCAGGGCAAAGTTGTTGTGGATGTTGGATGTGGCACAGGAATACTATCTATTTTTTGTGCATTAGCTGGTGCTAGAAAGGTTTATGCAGTCGATGCAAGTGACATAGCAGTGCAGGCAACAGAAGTTGTTAAAGCAAATAACTTATCTGATAAGATCACGGTACTTCATGGGAGAGTTGAGGAGGTTGAAATTGATGAGGAGGTAGATGTCATTATATCGGAATGGATGGGTTACATGCTTCTATATGAGAGCATGCTTTCTAGTGTAATCATTGCAAGAGATCGTTGGCTCAAGTCAGGGGGGCTAATTTTGCCTTCTCATGCGACATTGTACATGGCACCAGTTACACATCCTGAAAGATACAGTGAAAGTATTGACTTCTGGCGAAATGTTTATGGAATTGATATGTCTGCGATGTTACCATTGGCAAAGCAATGTGCCTTTGAGGAGCCTTGCATTGAAACAATTACAGCAGAAAATGTCTTGACATGGGCAATTGTTATCAAACAAATTGATTGTAGCACTGTCACAATACAGGAGTTGGAATCAGTTACTGCAAATTTCAATGTCTTGTCTATGATGAAAGCATCCCTGCATGGTTTTGCATTATGGTTTGATGTTTCATTTGGAGGGAATGCAACAACATCTAGTGATACCCAGTCAGAATCATCAATAGACAGCTCTTTATCTGGAGATGTTCGTGTAAATGGTGTACATCAAAGAAAAAAGCGTGCGAAATCACCTAATACACTTGTACTATCAACTGCTCCAGAAGAACCCCCCACCCATTGGGCCCAGACTTTGCTCTATATCTATGATCCTTTAGAGGTGAAGCAAGATCAAGTAATTGAAGGTTCTATTACGTTGTCACAGAGTAGGGAGAACCCGCGCTTTCTAAATATACACTTAGAATATGCTTCTGGGGGACGATGCTTTGTGAAGGAATCTATTATGCGGTGATATTTTCAGGTTGTTATTGTTCACAGCCTTTGGGGCATCATTATGAAGCATTTTATTTGATTATTTAATTGGTTCCTTGACGTTTTCTGTAGCAAAGTTGATCTGAAGGAATGCTGGGCTCAATTCGTACCATAATTTTGTCCTATGAATATCATCATAGGAGCTGGGTGCTCTTGTATGATGTTTATGCTATTACCATGGCTATCAAGAGGAAAGTCTTAGAGCATGCCTAAGACTTCTCATTTTTGTAGTGGTTTATCTCAGAGTACACATTCTATTAGCAAAGGTGGAGAGTTTCCAGTGAAATAAGATGTCAAATATTGCTGAGGTTTCACAGAAAAGGACAATGCCAAATCTCAATTTGAAGAAGGTTGGTGAGCATATAACTTTTGATTCATTGTTCAATGGTTGCTTGCAAGCAGAAATACACCACATTGCAGAAAAATTTCAAATCCAGATGCCTTGTTTTATTCATTTGTGTTAGAAGTGTAAATTTGTATGAAGTGAGTGTTGGGAGGAATCAGAATTGTGGCCATATTGTTCTGCTACCTTCCATTTCACTTTTGCTCCCTCAGAATATAGCATGCTGATATGTCGTATGCTTTACTCTCAATGGAGTTCATCAAATCTGCCAAGAAATATTCAGGCTGTCTCCATTATACAGGCACAGTAGCTATTTTCTGGATGTGTACAATTGACATTACAGGCACCTACTGCATGTAGGGTATTATAGTTATATGCCTTATCCTGCCTTTAAATCTGCAAATTTAACCCCCGTCATTTATGTATGGTGAACTTCTAAAAGAATATATTTCTTTCGTCAATGTTGTAGGTTTTCAAGATTCTCTCTTGCATTGGTTGTCTTCTCTATGTGAGGTCTATAATTCAAAGCTACACTGTACTTTTAAGCTTTTAGCTAAGCCTTATTGTACTTTATTTACCAATCTCGGAAAGTGGGAAAGGACATTGAAGAACGTAAACGGCATAGTACAGACAATACATATTGTGAACACGTCTAAAATTTGTCCTTTATTTGACTTGTATCCCTTTTTGTGAATCGGTCTATCAAAAAACTATTGTGGTGGAAAGTACTGTAAAAATAATGTATTCTTATTTCATGAAATGTAGGAGTAATTGTCC

Ace file of the UniGene sp_v3.0_unigene5390 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein arginine n-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RGH9_RICCO	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	ECs	Term	Type	e value	Identity
Sma3	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	1.801e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	1.801e-15	%
Sma3	Tetracycline biosynthesis	00253	1.801e-15	%
Sma3	Histidine metabolism	00340	1.801e-15	%
Sma3	Tyrosine metabolism	00350	1.801e-15	%
Sma3	Phenylalanine metabolism	00360	1.801e-15	%
Sma3	Tryptophan metabolism	00380	1.801e-15	%
Sma3	Benzoxazinoid biosynthesis	00402	1.801e-15	%
Sma3	Selenocompound metabolism	00450	1.801e-15	%
Sma3	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	1.801e-15	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624	1.801e-15	%
Sma3	Methane metabolism	00680	1.801e-15	%
Sma3	Porphyrin and chlorophyll metabolism	00860	1.801e-15	%
Sma3	Carotenoid biosynthesis	00906	1.801e-15	%
Sma3	Phenylpropanoid biosynthesis	00940	1.801e-15	%
Sma3	Flavonoid biosynthesis	00941	1.801e-15	%
Sma3	Anthocyanin biosynthesis	00942	1.801e-15	%
Sma3	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	1.801e-15	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	1.801e-15	%
Sma3	Insect hormone biosynthesis	00981	1.801e-15	%
Sma3	Biosynthesis of type II polyketide products	01057	1.801e-15	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.801e-15	%
Sma3	Metabolic pathways	01100	1.801e-15	%
Sma3	Biosynthesis of secondary metabolites	01110	1.801e-15	%

Source	Gene names
Sma3	At3g20020; At4g29510; GSVIVT00002584001; LOC_Os04g58060; MAL21.12; MICPUCDRAFT_34773; MICPUN_109100; OSJNBa0064G10.11; Os04g0677066; OsI_030013; OsI_032963; OsI_34113; OsJ_015894; OsJ_31971; PAM1; PHYPADRAFT_191339; PHYPADRAFT_70458; POPTRDRAFT_581126; PO

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	protein-arginine N-methyltransferase activity	GO:0016274	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Methyltransferase type 12	IPR013217	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G20020.1	ATPRMT6, PRMT6 protein arginine methyltransferase 6 chr3:6984055-6987945 REVERSE LENGTH=435	71%
RefSeq	Arabidopsis thaliana	NP_188637.2	protein arginine N-methyltransferase 6 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002310910.1	hypothetical protein POPTRDRAFT_832445 [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV48

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MYSNNVRREIDRRGGFNTGRDRFRRAVRNVPRERDCRPYGEHDAAYFSSYAHVGIHEEMIKDRVRTETYRAAILQHRNAIQGKVVVDVGCGTGILSIFCALAGARKVYAVDASDIAVQATEVVKANNLSDKITVLHGRVEEVEIDEEVDVIISEWMGYMLLYESMLSSVIIARDRWLKSGGLILPSHATLYMAPVTHPERYSESIDFWRNVYGIDMSAMLPLAKQCAFEEPCIETITAENVLTWAIVIKQIDCSTVTIQELESVTANFNVLSMMKASLHGFALWFDVSFGGNATTSSDTQSESSIDSSLSGDVRVNGVHQRKKRAKSPNTLVLSTAPEEPPTHWAQTLLYIYDPLEVKQDQVIEGSITLSQSRENPRFLNIHLEYASGGRCFVKESIMR*

Protein Length: 401

Fln nts: GGGACAGAGGTAAAATACCGACTGCCAGACACAACATTCTTCTTGACCTCTGCAAGCCTCATGGTTAAACCCTACATTCTGCAAACCCCAGTCCCCTTTTTATCATCAGCAAATCGTTTATTGCTCCAGTTTTAGAGCTGAAAATCGGAGGGAACGACGCATAATTCAGAG_-_ATGTATAGCAACAACGTCCGTAGGGAAATCGATAGACGAGGGGGCTTCAACACTGGCAGGGACAGATTCCGCAGGGCTGTCAGAAACGTTCCGAGGGAGAGGGATTGCAGGCCTTATGGTGAACACGATGCTGCTTATTTCAGCTCCTATGCCCATGTCGGGATTCACGAAGAAATGATCAAAGATCGTGTACGCACTGAAACATACAGAGCTGCCATACTACAACATCGAAATGCTATTCAGGGCAAAGTTGTTGTGGATGTTGGATGTGGCACAGGAATACTATCTATTTTTTGTGCATTAGCTGGTGCTAGAAAGGTTTATGCAGTCGATGCAAGTGACATAGCAGTGCAGGCAACAGAAGTTGTTAAAGCAAATAACTTATCTGATAAGATCACGGTACTTCATGGGAGAGTTGAGGAGGTTGAAATTGATGAGGAGGTAGATGTCATTATATCGGAATGGATGGGTTACATGCTTCTATATGAGAGCATGCTTTCTAGTGTAATCATTGCAAGAGATCGTTGGCTCAAGTCAGGGGGGCTAATTTTGCCTTCTCATGCGACATTGTACATGGCACCAGTTACACATCCTGAAAGATACAGTGAAAGTATTGACTTCTGGCGAAATGTTTATGGAATTGATATGTCTGCGATGTTACCATTGGCAAAGCAATGTGCCTTTGAGGAGCCTTGCATTGAAACAATTACAGCAGAAAATGTCTTGACATGGGCAATTGTTATCAAACAAATTGATTGTAGCACTGTCACAATACAGGAGTTGGAATCAGTTACTGCAAATTTCAATGTCTTGTCTATGATGAAAGCATCCCTGCATGGTTTTGCATTATGGTTTGATGTTTCATTTGGAGGGAATGCAACAACATCTAGTGATACCCAGTCAGAATCATCAATAGACAGCTCTTTATCTGGAGATGTTCGTGTAAATGGTGTACATCAAAGAAAAAAGCGTGCGAAATCACCTAATACACTTGTACTATCAACTGCTCCAGAAGAACCCCCCACCCATTGGGCCCAGACTTTGCTCTATATCTATGATCCTTTAGAGGTGAAGCAAGATCAAGTAATTGAAGGTTCTATTACGTTGTCACAGAGTAGGGAGAACCCGCGCTTTCTAAATATACACTTAGAATATGCTTCTGGGGGACGATGCTTTGTGAAGGAATCTATTATGCGGTGATATTTTCAGGTTGTTATTGTTCACAGCCTTTGGGGCATCATTATGAAGCATTTTATTTGATTATTTAATTGGTTCCTTGACGTTTTCTGTAGCAAAGTTGATCTGAAGGAATGCTGGGCTCAATTCGTACCATAATTTTGTCCTATGAATATCATCATAGGAGCTGGGTGCTCTTGTATGATGTTTATGCTATTACCATGGCTATCAAGAGGAAAGTCTTAGAGCATGCCTAAGACTTCTCATTTTTGTAGTGGTTTATCTCAGAGTACACATTCTATTAGCAAAGGTGGAGAGTTTCCAGTGAAATAAGATGTCAAATATTGCTGAGGTTTCACAGAAAAGGACAATGCCAAATCTCAATTTGAAGAAGGTTGGTGAGCATATAACTTTTGATTCATTGTTCAATGGTTGCTTGCAAGCAGAAATACACCACATTGCAGAAAAATTTCAAATCCAGATGCCTTGTTTTATTCATTTGTGTTAGAAGTGTAAATTTGTATGAAGTGAGTGTTGGGAGGAATCAGAATTGTGGCCATATTGTTCTGCTACCTTCCATTTCACTTTTGCTCCCTCAGAATATAGCATGCTGATATGTCGTATGCTTTACTCTCAATGGAGTTCATCAAATCTGCCAAGAAATATTCAGGCTGTCTCCATTATACAGGCACAGTAGCTATTTTCTGGATGTGTACAATTGACATTACAGGCACCTACTGCATGTAGGGTATTATAGTTATATGCCTTATCCTGCCTTTAAATCTGCAAATTTAACCCCCGTCATTTATGTATGGTGAACTTCTAAAAGAATATATTTCTTTCGTCAATGTTGTAGGTTTTCAAGATTCTCTCTTGCATTGGTTGTCTTCTCTATGTGAGGTCTATAATTCAAAGCTACACTGTACTTTTAAGCTTTTAGCTAAGCCTTATTGTACTTTATTTACCAATCTCGGAAAGTGGGAAAGGACATTGAAGAACGTAAACGGCATAGTACAGACAATACATATTGTGAACACGTCTAAAATTTGTCCTTTATTTGACTTGTATCCCTTTTTGTGAATCGGTCTATCAAAAAACTATTGTGGTGGAAAGTACTGTAAAAATAATGTATTCTTATTTCATGAAATGTAGGAGTAATTGTCC

Fln Alignment:

Contig5390___YFSSYAHVGIHEEMIKDRVRTETYRAAILQHRNAIQGKVVVDVGCGTGILSIFCALAGARKVYAVDASDIAVQATEVVKANNLSDKITVLHGR-XXXXXXXXXXXXXISEWMGYMLLYESMLSSVIIARDRWLKSGGLILPSHATLYMAPVTHPERYSESIDFWRNVYGIDMSAMLPLAKQCAFEEPCIETITAENVLTWAIVIKQIDCSTVTIQELESVTANFNVLSMMKASLHGFALWFDVSFGGNAXXXXXXXXXXXXXXXXXXDVRVNGVHQRKKRAKSPNTLVLSTAPEEPPTHWAQTLLYIYDPLEVKQDQVIEGSITLSQSRENPRFLNIHLEYA-SGGRC
A9NV48______________YFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNSFLFKDKVVLDVGAGTGILSLFCAKGGAKHVYAVECSHMADMAQEIVKANGYSDVITVLKGKIEEIELPVQNVDIIISEWMGYFLLFENMLNTVLYARDKWLIPGGIVLPDKASLYLTAIEDADYKAEKIDFWENVYGFDMTCI----KKQAMLEPLVDTVDRNQIVTNCQSLKTMDISKMKPGD-ASFTASFKLVAERNDYIHALVAYFDVAF--------------------TNCHKVTG---------------FSTGPKSRATHWKQTVLYLEDVITICEGEALVGSMTIAQNSKNPRDVDITLEYSISGKRC

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1872	87		12		0.992554
1917	87	12			0.992554
1918	87	12			0.992554
1920	12	87			0.992554
1995		20		80	0.995493
2049	80	20			0.995493
2073	85	14			0.993533
2160		16		83	0.999991
2163	16		83		0.999991
2235	12		87		0.992554
2265	50		50		1.0
2276	55			44	1.0
2280	44		55		1.0
2283		55		44	1.0
2291	44			55	1.0
2303		66		11	0.999999
2304		11		88	0.923564
2305	44	55			1.0
2323		62		37	1.0
2335		62		37	1.0
2347	37		62		1.0
2348	62			37	1.0
2350			37	62	1.0
2373	14	42		42	1.0
2376			85	14	0.993533
2377		85		14	0.993533
2379		60		40	1.0
2381	60	40			1.0
2390	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain