SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5388

Length: 2122 nt

UniGene Fasta

>sp_v3.0_unigene5388
CGTCGTGACCTTGGCTGTCACTCAAGGCGTTGAAATGGAGAGTCGTTTTTCTGTTGGTTGGACTCCACACTCAGCCGACGCTCTTTCCCTTTCCCTTTCTTTCTCCGTTTGCGAGCGGACGGGATTAGGTGTTATTATTGTTATGTGTTTTTTCCTATTTCAATTGGGTGGTTGGAAGGTAGAGGGGTCCAGACTGGATATGCTTGACACCTTCAAATAAGTATAGGTGCACTGCTTCCCATCGCCATCGCCATAACCAGATCGGAGAAGCATTAAGCAACAGTGGGTGTTACACGGGTATCAGATCTTTATCATATAAAAGGGAGTGCAGGATGGGAGACAGGGGGGTTTTGTGCTGTTTGTGTTGAGAACAGGGGTTTGTTTCTTAGGGTTTGCAGAAATGCATCTGGAATTGACCCTAGCGGCGGAGGAGATAGTGGTGGATGTGGCTGCGGTGGCGGCGGAGGAGGATGAGGAGGAGCAGTTCGAGCGCCTCTCGGACGCGGTGGTGTTGTGCATATTGAACAGAGTGGGGGACATAAAGGCGCTGGGGCGATGCTGCGTGGTGTCGCGGAGGTTCAATGCTCTGGTGCCGCAGGTGGAAAACGTGGTGGTGAAGGTCGATTGCGTCATATCGGGTGAAGATGGCGGCGGCCTTAATGTGAAGGGGAAGGGAATACTCACCCACCTGTTGCGCTTCGTTGTGGGCAGCATCGTGAAACCCTTGCAGGCGCTGCATCATCTTATTGTGAATCCCAAGAAGGTGGCGGCGGTGGCGGCTCTGGATGAGGTTTCTCATCATTCGCCCAGCGAGGTTCTGAGGAATTTTAAGGAGATTCAGAAGCTTCGGATTGAGTTGCCTGGGGGCGAACTCGGGATCGAAGACGGGGTTTTGCTCAAGTGGAAGGCCGAATTCGGGAGCACTTTAGAAAGCTGCGTTATTCTCGGCGCTTCTGCTATTATAAAAAATGGCAAGGAAACCTCTGTTAAACCCTCGGGGACCTGTTCTTCAAGTGACGAAACCCTTTCCCATGCAGGGGATGAGAGTGGGAGTATTCCCGAGTCTTTTTACACCAACGGGGGTTTGAAGCTTAGGGTTGTGTGGACTATCAGTTCCCTGATAGCCGCATCTGCCAGGCACTTTCTTTTACAGCAGATAATTTCAGATCACCCTACCTTGCAGAGCCTCGTTCTCACCGATTCTGATGCCCAGGGGGTTCTCTGTATGGGCAAAAATCAGTTACAGGAGCTTCGCGATAAACCCCTTGCGGCTTCGGCTTCTTCAAACCGGACCCAGGTCCCTGCCCTCAACATGAAATTGTGGTACGCTCCTTATCTTGAGCTTCCCGGTGGCATGGCTTTGAAGGGCGCAACTCTCGTTGCGATTCGACCCAGTGACCAGCCGGTGCGAAAAGAAAGCGATGCATTTGTTGCCGGTGCTTTCGACGAGCCTTTCAAGACCGCGGCTAGCCTTCTCGTCCGAAGACGAACTTATCTCCTTGAGATGAATTCCTTCTAAGGCTCCAGAAACTCTATGAGGGTTTTAACTGATATTAACAGGGTCTCTGTATTAAAGTTATTGTTATTTACATTCTCATTCAAGAAAAACATCCTTGATGACCTATAATGTATCATCAGAGGGAGATCATGGATATATGGAACTGTATAGATCGGAGATATACAGATTTTACTGATACCAAGAATCGAAACTAAAGATCAAGGTAACAACAATACATTGTAAGCAGACTCTGCTGCAGTACCAAGTTTCTTGCTGAGGTAAAAGGTTCACGATGAGCTGGTTTGATTTAAGGATGATCTTGGCAGTTCAGGGCTTTGTACTTGTGGAAACAGATACTGCTGTAAACCGGGATGCTTGAACCGAGTATTTGGCAGCTGGTGGATTTCGGAAGTCAGCATCTCATACATATTAAATAATTACAAAAATATGATGGTACATTTCATGAAACAAGGTTCTGTGTTCAACTCGTTTCGAGTTCGCAATGTTAAGCACTATGTATTGACATCCTCTTTAGCATCGGATGGCTCTCTTAACAATAGCACTCAGAAATCTAGGGCGTGTTGTAATCTGTAACATTAAGATAAGTGTTGATTTTTCGAATAT

Ace file of the UniGene sp_v3.0_unigene5388

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box protein [Arabidopsis thaliana] sp\|Q9FNK5.1\|FB285_ARATH RecName: Full=F-box protein At5g46170 dbj\|BAB08262.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL49842.1\| unknown protein [Arabidopsis thaliana] gb\|AAN13195.1\| unknown protein [Arabido	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	F-box domain containing protein	-	-	4.179e-16	-

Source	Gene names
Sma3	At1g30200; At4g18380; At5g46170; F12P21.1; F28J12.40; GSVIVT00022244001; GSVIVT00028329001; LOC_Os03g20500; MCL19.23; OJ1005_B11.4; OSJNBa0088I06.3; Os01g0770400; Os01g0812200; Os03g0321300; Os05g0490300; Os05g0510400; OsI_03898; OsI_04173; OsI_11347; OsI

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	trehalose biosynthetic process	GO:0005992	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G46170.1	F-box family protein chr5:18715638-18716825 REVERSE LENGTH=395	57%
RefSeq	Arabidopsis thaliana	NP_199429.1	F-box protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002305042.1	f-box family protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D5

Fln msg:

Fln protein: MHLELTLAAEEIVVDVAAVAAEEDEEEQFERLSDAVVLCILNRVGDIKALGRCCVVSRRFNALVPQVENVVVKVDCVISGEDGGGLNVKGKGILTHLLRFVVGSIVKPLQALHHLIVNPKKVAAVAALDEVSHHSPSEVLRNFKEIQKLRIELPGGELGIEDGVLLKWKAEFGSTLESCVILGASAIIKNGKETSVKPSGTCSSSDETLSHAGDESGSIPESFYTNGGLKLRVVWTISSLIAASARHFLLQQIISDHPTLQSLVLTDSDAQGVLCMGKNQLQELRDKPLAASASSNRTQVPALNMKLWYAPYLELPGGMALKGATLVAIRPSDQPVRKESDAFVAGAFDEPFKTAASLLVRRRTYLLEMNSF*

Protein Length: 374

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGCGTTGAAATGGAGAGTCGTTTTTCTGTTGGTTGGACTCCACACTCAGCCGACGCTCTTTCCCTTTCCCTTTCTTTCTCCGTTTGCGAGCGGACGGGATTAGGTGTTATTATTGTTATGTGTTTTTTCCTATTTCAATTGGGTGGTTGGAAGGTAGAGGGGTCCAGACTGGATATGCTTGACACCTTCAAATAAGTATAGGTGCACTGCTTCCCATCGCCATCGCCATAACCAGATCGGAGAAGCATTAAGCAACAGTGGGTGTTACACGGGTATCAGATCTTTATCATATAAAAGGGAGTGCAGGATGGGAGACAGGGGGGTTTTGTGCTGTTTGTGTTGAGAACAGGGGTTTGTTTCTTAGGGTTTGCAGAA_-_ATGCATCTGGAATTGACCCTAGCGGCGGAGGAGATAGTGGTGGATGTGGCTGCGGTGGCGGCGGAGGAGGATGAGGAGGAGCAGTTCGAGCGCCTCTCGGACGCGGTGGTGTTGTGCATATTGAACAGAGTGGGGGACATAAAGGCGCTGGGGCGATGCTGCGTGGTGTCGCGGAGGTTCAATGCTCTGGTGCCGCAGGTGGAAAACGTGGTGGTGAAGGTCGATTGCGTCATATCGGGTGAAGATGGCGGCGGCCTTAATGTGAAGGGGAAGGGAATACTCACCCACCTGTTGCGCTTCGTTGTGGGCAGCATCGTGAAACCCTTGCAGGCGCTGCATCATCTTATTGTGAATCCCAAGAAGGTGGCGGCGGTGGCGGCTCTGGATGAGGTTTCTCATCATTCGCCCAGCGAGGTTCTGAGGAATTTTAAGGAGATTCAGAAGCTTCGGATTGAGTTGCCTGGGGGCGAACTCGGGATCGAAGACGGGGTTTTGCTCAAGTGGAAGGCCGAATTCGGGAGCACTTTAGAAAGCTGCGTTATTCTCGGCGCTTCTGCTATTATAAAAAATGGCAAGGAAACCTCTGTTAAACCCTCGGGGACCTGTTCTTCAAGTGACGAAACCCTTTCCCATGCAGGGGATGAGAGTGGGAGTATTCCCGAGTCTTTTTACACCAACGGGGGTTTGAAGCTTAGGGTTGTGTGGACTATCAGTTCCCTGATAGCCGCATCTGCCAGGCACTTTCTTTTACAGCAGATAATTTCAGATCACCCTACCTTGCAGAGCCTCGTTCTCACCGATTCTGATGCCCAGGGGGTTCTCTGTATGGGCAAAAATCAGTTACAGGAGCTTCGCGATAAACCCCTTGCGGCTTCGGCTTCTTCAAACCGGACCCAGGTCCCTGCCCTCAACATGAAATTGTGGTACGCTCCTTATCTTGAGCTTCCCGGTGGCATGGCTTTGAAGGGCGCAACTCTCGTTGCGATTCGACCCAGTGACCAGCCGGTGCGAAAAGAAAGCGATGCATTTGTTGCCGGTGCTTTCGACGAGCCTTTCAAGACCGCGGCTAGCCTTCTCGTCCGAAGACGAACTTATCTCCTTGAGATGAATTCCTTCTAA___GGCTCCAGAAACTCTATGAGGGTTTTAACTGATATTAACAGGGTCTCTGTATTAAAGTTATTGTTATTTACATTCTCATTCAAGAAAAACATCCTTGATGACCTATAATGTATCATCAGAGGGAGATCATGGATATATGGAACTGTATAGATCGGAGATATACAGATTTTACTGATACCAAGAATCGAAACTAAAGATCAAGGTAACAACAATACATTGTAAGCAGACTCTGCTGCAGTACCAAGTTTCTTGCTGAGGTAAAAGGTTCACGATGAGCTGGTTTGATTTAAGGATGATCTTGGCAGTTCAGGGCTTTGTACTTGTGGAAACAGATACTGCTGTAAACCGGGATGCTTGAACCGAGTATTTGGCAGCTGGTGGATTTCGGAAGTCAGCATCTCATACATATTAAATAATTACAAAAATATGATGGTACATTTCATGAAACAAGGTTCTGTGTTCAACTCGTTTCGAGTTCGCAATGTTAAGCACTATGTATTGACATCCTCTTTAGCATCGGATGGCTCTCTTAACAATAGCACTCAGAAATCTAGGGCGTGTTGTAATCTGTAACATTAAGATAAGTGTTGATTTTTCGAATAT

Fln Alignment:

Contig5388___ERLSDAVVLCILNRVGDIKALGRCCVVSRRFNALVPQVENVVVKVDCVISGEDGGGLNVKGKGILTHLLRFVVGSIVKPLQALHHLIVNPKKVAAVAALDEVSHHSPSEVLRNFKEIQKLRIELPGGELGIEDGVLLKWKAEFGSTLESCVILGASAIIKNGKETSVKPSGTCSSSDETLSHAG--DESGSIPESFYTNGGLKLRVVWTISSLIAASARHFLLQQIISDHPTLQSLVLTDSDAQGVLCMGKNQLQELRDKPLAASASSNRTQVPALNMKLWYAPYLELPGGMALKGATLVAIRPSDQPV--RKESDAFVAGAFDEPFKTAASLLVRRRTYLLEMNSF
D5A9D5______________DRIPDSLLLLIFNKVADIKALGRCCAVSKRFNFLVPQVENVVVKVDCVISGEDGG-LNAKGKGIIGHLVRFMIGSIVKPLQALQHFI-GPRK----AILAEVSHHSPAEVLKNFKEIQHLRIELPGGELGVEDGVLLKWKAEFGSTLESCVIFGAASVLSKGLKTGSRRKIQLVSDDEPEGLEGLEDDNGSIPDSFYINSWLKLRVVWTISSLIAASARHFLLKEIIHDHPTLQNLVLTDADGQGTLCMGREQLCEFRDKPLAASPSSNRTQVPALNMKLRYAPTLELPSGTVMQGATLVTIRPSDQTIAAKKESEGFIVGAFEGPYRAAAKILSRRRTYLLEMNSF

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
1184		85	14		0.993533
1367		11		88	0.923564
1368		11		88	0.923564
1416		88		11	0.923564
1445		18		81	0.999994
1469		90		10	0.90298
1470	10		90		0.90298
1472			90	10	0.90298
1527			90	10	0.90298
1528			88	11	0.923564
1564	87		12		0.992554
1609	88			11	0.923564
1610			88	11	0.923564
1663	11	88			0.923564
1676			88	11	0.923564
1677	88		11		0.923564
1678			11	88	0.923564
1679		88	11		0.923564
1719	85	14			0.993533
1720	85		14		0.993533
1721	85			14	0.993533
1724		14		85	0.993533
1726	85			14	0.993533
1727	85			14	0.993533
1731	85		14		0.993533
1732	85			14	0.993533
1740	85	14			0.993533
1741	14	85			0.993533
1828		20	80		1.0
1867	20		80		1.0
1898		80	20		1.0
1912		80		20	1.0
1913			80	20	1.0
1923	80		20		1.0
1934	78			21	1.0
1935	23			76	1.0
1936		23		76	1.0
1965		25		75	1.0
1970		10	90		0.90298
1971	77		22		0.999999
1972	88			11	0.923564
1973	66		22	11	0.999999
1988		54		45	1.0
2026	18			81	0.999994
2065	20		80		0.999996
2066		90		10	0.90298
2067	11			88	0.923564
2068		11		88	0.923564
2070		87		12	0.992554
2081	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain