SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5380

Length: 1567 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5380 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB82970.1\| putative protein [Arabidopsis thaliana] gb\|AAL62400.1\| putative protein [Arabidopsis thaliana] gb\|AAN15556.1\| putative protein [Arabidopsis thaliana] gb\|AED90415.1\| uncharacterized protein [Ar	-	-	9.94922e-44	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%

Source	Gene names
Sma3	10; AT4g02800; At1g30050; At2g30530; At4g02800; At5g01970; GSVIVT00023914001; GSVIVT00033638001; H0209A05.2; Krtap3-1; LOC_Os11g02640; LOC_Os12g02570; MtrDRAFT_AC136139g6v2; OJ1308_D01.13; OJ1333_C12.2; OSJNBa0065B15.1; OSJNBb0071D01.5; Os04g0228100; Os05

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01970.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (s	57%
RefSeq	Arabidopsis thaliana	NP_195817.1	uncharacterized protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002323688.1	predicted protein, partial [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7SJG7

Fln msg: Separated hits, possible frame ERROR between 512 and 533, query STOP codon too far from subject stop. Distance to subject end: 57 aas, putative chimeric sequence, your sequence is shorter than subject: 365 - 420

Fln protein: MEEASSLAAAMRDSSARRDSSLSSAYRESALASASRESLRIHRHHSSNSNSTQQKSFTPNGSTSLKDTVEPKQSFWSALAKKAKSALLEDGSPIQYPESQVRNGSHVEQARAHIQASIPERQRQTDAPAFQKGIDAITSSLTLIGGSIGNALESSxxxxxxxxWIGGSIGNALEEGLNIVENKASDIISDTRRSMKKTADPGKAADRQRQCKKAPNVETNQETQLKASRDVAMAMAAKVKLLLRELKTYKADLAFAKERCTQLEEENKVLRESLEKGDRPDEDDLIRLQLETLLAEKSRLAQENASYARENRFLREIVEYHQMTMQDVVHLDEMREVTEIGLDPDSETQIGMLPLEKSISSRSR*

Protein Length: 366

Fln nts: ATGGCCGAAAGTAATAATTATTCGAGGAAGAAGATTATTCGTCG_-_ATGGAAGAAGCTTCGTCACTGGCGGCTGCAATGAGGGATTCATCCGCGCGCAGGGATTCTTCTTTGTCTTCGGCGTACCGGGAATCGGCTTTGGCTTCGGCCAGCAGAGAATCTTTGAGGATCCACAGACATCATTCTTCCAACTCGAACTCCACTCAACAGAAATCTTTTACTCCAAATGGATCGACATCTTTGAAAGATACAGTTGAACCCAAACAGAGCTTTTGGAGTGCTCTTGCAAAGAAAGCAAAGTCAGCTCTTCTGGAAGATGGCAGTCCTATCCAATATCCTGAGTCACAAGTAAGAAATGGATCCCATGTAGAACAAGCACGTGCACATATTCAGGCTAGTATACCTGAGAGACAACGGCAAACAGATGCTCCTGCTTTTCAGAAAGGGATAGATGCAATTACTTCTTCCCTTACATTAATTGGTGGCAGCATCGGAAATGCCTTAGAGTCATCCAAxxxxxxxxxxxxxxxxxxxxxCTGGATTGGTGGCAGCATCGGAAATGCCTTAGAGGAGGGGTTGAACATTGTGGAAAATAAAGCTTCAGACATTATATCTGATACTCGACGGTCCATGAAAAAGACAGCTGATCCTGGTAAAGCTGCTGATCGGCAACGTCAATGCAAAAAAGCACCAAACGTGGAAACAAATCAAGAGACACAACTAAAGGCATCTCGCGACGTTGCGATGGCAATGGCTGCAAAAGTTAAGCTTCTTCTACGTGAGCTGAAGACATATAAAGCAGACCTTGCATTTGCCAAAGAGCGTTGTACACAATTAGAGGAGGAAAATAAAGTACTAAGGGAAAGCCTTGAGAAAGGTGATAGGCCTGATGAAGATGACTTGATAAGGCTTCAGTTGGAGACATTACTGGCTGAAAAGTCACGTCTTGCCCAAGAGAATGCCAGTTATGCCCGTGAAAATCGATTTCTACGTGAAATAGTGGAGTATCACCAGATGACTATGCAAGATGTGGTTCATTTGGATGAGATGCGTGAGGTGACAGAAATTGGTTTGGACCCTGATTCAGAGACCCAGATAGGAATGCTTCCCCTGGAAAAGTCAATTTCATCCAGATCCCGTTGA___CTCTGCACAAGTATCCGCAGCTAGCTCTGGAAGATATGGTTCTTTTGGATGAGAATGCGTGGCAAGTAACAGATAGGTTTCAATCCTAATACAGAGACACAGCTGGAGGCGTTACATCTAGAAAAGAAAAATTCATCTTATGTATTATGATGGTTCCATTTTGATGATCTTGTTGTCAAAGATTATTGGTAGATGCATGTCCATTAAATCTTTATCTCCCTACTTCCATGCAGATCTCTGTATAGTGTGTAGGATATTGTTCGCCGCTGCAATTTGGGGTGTTTGTGTATAAATATCTTAATACTGTTTGGGGTGTTCGTGGTTCGCAGGCATACCATTCTTTAGGTTGTTGGGCTGTATTATTACATTATTTATTAGCAACTGTTCTGGGTTTGCCTCTAATAAGAAAGGTTATATTTCAAGCAACTT

Fln Alignment:

Contig5380___KSFTPNGSTSLKDTVEPKQSFWXXXXXXXXXXXLEDGSPIQYPESQ---VRNGSHVEQARAHIQASIPERQRQTDAPAFQKGIDAITSSLTLIGGSIGNALESSKxxxxxxxWIGGSIGNALEEGLNIVENKASDIISDTRRSMKKTADPGKAADRQR-----------QCKKAPNVETNQETQLKASRDXXXXXXXXXXXXLRELKTYKADLAFAKERCTQLEEENKVLRESLEKGDRPDEDDLIRLQLETLLAEKSRLAQENASYARENRFLREIVEYHQMTMQDVVHLDE-MREVTEI
D7SJG7______________KDSTSYEYTSMKSSNESKYGFWGALARKAKAII-EDDNEAQQPEAPGRTSRQGPGTVTGQHHNQYHSPEGHQKTGAPKIQKGMDVIASSLNYIGGTIGNAFEEGRxxxxxxxYIGGTIGNAFEEGRTIVENRTADIIQETRKLHIRKKGSGSEPKHQATNIYTRKQTSMQAQMEPQLQADQEIQLKASRDVAMAMAAKAKLLLRELKTVKADLAFAKERCAQLEEENRILREHHEKGDNPEDDDLIRLQLETLLAEKARLAQENSVYARENRFLREIVEYHQLTMQDVIYLDERTEEVTEV

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
519	11	88			0.923564
520		88	11		0.923564
527	88		11		0.923564
544		87		12	0.992554
653	12		87		0.992554
656		12		75	0.975346
660	75			25	1.0
679	83		16		0.994512
889		42		57	1.0
1007	33			66	0.997452
1008	33	66			0.997452
1009			33	66	0.997452
1010	66		33		0.997452
1012	33		66		0.997452
1013		33	66		0.997452
1014		66		33	0.997452
1018	33			66	0.997452
1019		66		33	0.997452
1026		33		66	0.997452
1029	33	66			0.997452
1031	66			33	0.997452
1034	66	33			0.997452
1035	66			33	0.997452
1090	33		66		0.997452
1092	33	66			0.997452
1093	66			33	0.997452
1094		66		33	0.997452
1148	33		66		0.997452
1149		66		33	0.997452
1150	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain