SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5371

Length: 1752 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5371 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tocopherol cyclase [Eucalyptus gunnii]	-	-	0.0	65%
FL-Next	sp=Probable tocopherol cyclase, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	0.0	65%
Sma3	Tocopherol cyclase	-	-	3.647e-34	-

Source	Gene names
Sma3	At4g32770; CHLREDRAFT_101649; GSVIVT00032449001; MICPUCDRAFT_33085; MICPUN_68115; OSJNBa0055M07.5-1; OSJNBa0055M07.5-2; Os02g0276500; OsI_06739; OsJ_06237; P0017G06.29-1; P0017G06.29-2; PHYPADRAFT_136591; RCOM_0802380; SDX1; SXD1; Sxd1; TC; VTE1; tc;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	plastoglobule	GO:0010287	Cellular Component	-
Sma3	tocopherol cyclase activity	GO:0009976	Molecular Function	-
Sma3	fatty acid metabolic process	GO:0006631	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to temperature stimulus	GO:0009266	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	phloem sucrose loading	GO:0009915	Biological Process	-
Sma3	vitamin E biosynthetic process	GO:0010189	Biological Process	-
Sma3	chlorophyll metabolic process	GO:0015994	Biological Process	-
Sma3	xanthophyll metabolic process	GO:0016122	Biological Process	-
Sma3	regulation of defense response	GO:0031347	Biological Process	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32770.1	VTE1, ATSDX1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) chr4:15804981-15807790 FORWARD LENGTH=488	0.0	63%
RefSeq	Arabidopsis thaliana	NP_567906.1	tocopherol cyclase [Arabidopsis thaliana]	0.0	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q6K7V6

Fln msg: atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region,

Fln protein: MSYISSAPLLNTLVETPFRVTVPSQSRGRRFFISAVHKRSANPVYVPTPAHRELRAPHSGYHYDGSVRRFFEGWYFKVSLPEQKESFCFMYSAEDPAFSQRPGSLEELLIGPRFPGIGAQILGPEEKYICQYSNEVQYFWGSRHELALGNTFLPKKGSSPPKREINPEEFCRRVEEGFQVTPIWHQGFIRDDGRSSYVQTVKTARWQYSTRPVYGWGDVSSKQKATAGWLAAFPVFEPHWQICMAGGLSTGWIEWEDQRYEFENAPSYSEKNWGGSFPQRWFWVQCNVFEGAVGEVALTAGGGRRSLPGFPNTYEELAMVGVHYDGKLFEFVPWNGVVEWEISPWGYWQMIAHNGLYEVELVATTKSNGTVLRAPTNEAGLVPFCKDTCYGDLKLKIWEHTKNHQRGKVILDVSSDLAALEVGGGPWYNTWKKQSSSPSLLRQLLGLPLDVEEIFNPLPIVKPPGL*

Protein Length: 468

Fln nts: ATGGGGGAAAATAGATAAAA_-_ATGTCTTACATTTCCTCTGCTCCTCTACTGAACACGTTGGTGGAAACTCCCTTTCGGGTTACAGTACCATCACAGAGTAGAGGGAGACGATTTTTTATCAGCGCAGTGCATAAGCGCTCTGCGAACCCTGTTTACGTTCCAACTCCTGCACACAGAGAACTCCGGGCACCTCACAGCGGGTATCATTATGATGGAAGTGTTCGGAGGTTTTTTGAAGGTTGGTACTTTAAAGTGTCCCTCCCAGAACAGAAGGAGAGTTTCTGTTTTATGTATTCAGCCGAGGATCCAGCCTTTTCTCAGAGACCAGGGAGTTTGGAAGAGTTGTTAATTGGGCCACGTTTTCCAGGAATAGGAGCTCAAATACTCGGTCCAGAAGAGAAGTATATTTGCCAATACTCAAATGAGGTTCAATATTTTTGGGGAAGCAGGCATGAGTTGGCTCTAGGAAATACCTTTTTGCCAAAGAAAGGTTCATCACCACCAAAGAGGGAGATAAATCCAGAGGAATTTTGCAGAAGGGTAGAGGAAGGATTCCAAGTTACTCCAATTTGGCACCAAGGATTTATTCGTGACGATGGAAGGTCTAGTTATGTGCAGACAGTGAAGACTGCACGTTGGCAATACAGTACCAGGCCTGTATATGGATGGGGTGATGTTAGTTCTAAACAAAAGGCAACGGCAGGTTGGTTAGCAGCGTTTCCCGTTTTCGAACCCCATTGGCAAATATGCATGGCAGGTGGTCTTTCCACAGGATGGATAGAGTGGGAAGATCAGAGGTATGAATTTGAGAATGCACCATCATATTCGGAGAAGAACTGGGGCGGTTCCTTTCCACAAAGGTGGTTCTGGGTTCAATGCAATGTGTTTGAGGGTGCTGTTGGAGAGGTTGCATTGACTGCAGGTGGTGGGAGAAGATCACTTCCAGGATTTCCTAATACATACGAGGAACTAGCTATGGTAGGAGTTCATTATGATGGAAAATTATTTGAATTTGTGCCATGGAATGGTGTTGTTGAGTGGGAGATTTCCCCATGGGGTTATTGGCAGATGATAGCTCACAATGGTTTGTATGAGGTTGAACTGGTAGCAACAACAAAATCAAATGGCACAGTTTTGCGAGCTCCAACAAATGAAGCTGGTCTTGTGCCTTTCTGTAAGGATACATGTTATGGCGATCTTAAATTAAAGATATGGGAGCATACTAAAAACCATCAGCGAGGCAAGGTCATTCTTGATGTCAGTAGTGATTTGGCAGCACTTGAAGTGGGTGGAGGACCATGGTACAATACTTGGAAAAAACAAAGCTCATCGCCCTCATTACTAAGACAACTCCTAGGGCTTCCATTAGATGTTGAGGAGATATTTAACCCTTTGCCAATAGTGAAGCCACCTGGCCTTTAGAGTACAGAACTCTTCTTATTGGCAGAAATAAAGATTTCAATTTTTCAAAGCATTTTTCCCCAATTCATGTATAATTTCTGAATTCCTTGGCATATTTCCTAGCCTGTATAACCTTCTTTATTTGATTTTCCCAGCATCTTTACTTTGTGGCATGCCATTCCGATTATATTTTTTTTGGGGAAAGCATATGCATTGTTAGTGTTCAGAGAAGGCCAAGTATCTAGCAACCAGCTAGAGCTGCATTGCTCCGTCGAATGTTTTAAAACATTGTAAGAATTTATTTGCAACAATAGAAAATGACATTTGAGGTGGCATCTTACATTGCTGGTCG

Fln Alignment:

Contig5371___ANPVYVPTPAHRELRAPHSGYHYDGSVRRFFEGWYFKVSLPEQKESFCFMYSAEDPAFSQRPGSLEELLIGPRFPGIGAQILGPEEKYICQYSNEVQYFWGSRHELALGNTFLPKKGSSPPKREINPEEFCRRVEEGFQVTPIWHQGFIRDDGRSSYVQTVKTARWQYSTRPVYGWGDVSSKQKATAGWLAAFPVFEPHWQICMAGGLSTGWIEWEDQRYEFENAPSYSEKNWGGSFPQRWFWVQCNVFEGAVGEVALTAGGGRRSLPGFPNTYEELAMVGVHYDGKLFEFVPWNGVVEWEISPWGYWQMIAHNGLYEVELVATTKSNGTVLRAPTNEAGLVPFCKDTCYGDLKLKIWEHTKNHQRGKVILDVSSDLAALEVGGGPWYNTWKKXXXXXXXXXXXXXXXLDVEEIFNPLPIVKPPGL
Q6K7V6______________AAPVYAPTPRDRALRTPHSGYHYDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDRVIHGSRFTGVGAQILGADDKYICQFTEKSNNFWGSRHELMLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARWEYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAPSYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKI-GLGETYESPSLIGIHYEGKFYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKDTCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGTQVDVESLF-PIPFLKPPGL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1458		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain