SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5341

Length: 2053 nt

UniGene Fasta

>sp_v3.0_unigene5341
ACATGGGGGCTACACATGCAAATTAGGCTCAGTCCTCGTCAAGCCCCATCTGACCGACTCTCTAACGTGCCTACTTAAATACCCAATTAAACGAAGTTCCGGCGGCACTTGATTTGCATTTTCCTGGTTCGAGTCTACTGTTCGAATCGCGGGAACGGATAAACCAGTGGATCGCAGAAAAAATTGAGAAAATTTAAGGCTCCTTGAGTTTTCGACGGTCAAGAACAATTAATTGACAGGAGGTGTTGTCGCAATGAGGAGAGCTTTAAATTCCCTCCAAGAACAGCTCGCAGAAGCTGTCTACGGCACGGGAATGTACGGCAGGAATCCCACAAACACGGAATCCCGTTATGTGGCAGACACCGTAAAAGGATCCCACGATTTAACCATCGTGGGATTTTCTCTGGCCAAGGGCATGGGTGTCGGTAATTTCCTTGCGAGCGAGACTTTCAGCGTCGGAGGATACGACTGGGCCATTTACTTTTACCCCGACGGAAAAAACCCTGAAGACAATTCTCTGTATGTTTCGGTTTTCGTGGCTTTGGTCAGCGAGGGCACTGATGTGAGGGCTAAGTTTGAATTGAGGCTGATTGACCAGAGCGGCAAGGGGAGGCACAAAGTTCATAGCCATTTTGAACGCAGCCTTGAACGCGGGCCTTACACTTTGAAATACCACGGAAGCATGTGGGGTTACAAACGTTTCTACAGGCGAGCTCAGTTGGAAGTATCAGATTTTGTAAAGGATGATACTCTGAAAATATGTTGCACAGTTGGGGTTGTGGTTTCTGCTATTCACGGCCCTACATTGCACTATATTCATATTCCTGAATCAAACTTGGGCCAACAATTTGGGGCACTTCTTGAAGATGTGGAAAATGCAGATGTCACATTTGATGTATCAGGGGAAAAATTTCATGCTCACAAAGTGGTTCTGGCAGCACGTTCACCTGTATTTAAATCCATGTTTTTTGGGCCCACCCAGGATGATTGGAATGACAAAGAAATTAGCATTGAAGATACAAGGCCAGAGGTGTTTAAGGCTATGTTGCACTTTATTTACAAAGATACCCTTCCAGATTTAGAGGAGCATGGAGATTTAGAAGAGCTTTCTGATCCATCCCCTTGCTTTTTGACACCTGAGACAATGATCGAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCACAAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATTCAAGAACGATTGAAACATAAAGAGAAAAGCTGGAGTGCACCAAGTCATGAATCAAATGCCTCTGACAGCAACATATAAGGACACGACAAACTTAGTGATACAATCTACAGTGAGAAATCTGAAAATTCTGATTAGTTGAATGACACTAATTTTGAGGTATTTCTGGCTTTGGGGAGAAATTAACCAAGATGTCCCTGAAGCAGAAATGAAAGATTTTTTCCACTCTGGAAATCCTTGAGGTGACGACTTTGTAAGATGCATCCCAGCTTGCGCTAATAACTATGGAGCAATCAGCATGCTTTTTTTTCAAATATTTTTTTGTAGACTTTCAAAATTGATAACGATTTCATTGTACTACGAACGATGCACTGTTTCTTTCTAAATACACATGGATATCCAAGCCACCGGATGGGTGGCCATTATGCCTTTGCTATTACGAGAGCATCTGTTGCGTTTTATGATATCCGATAAAATTCGAACTCTTGTCAAATTGTCGAGGGCTCTATGGTTATTGCTTCGATATGAAATGCAGGACACAACGAGGATACAGTCTTGCATCATATTCTCTGTGACGCATTACAAGAAATCAGAATGTGAATAAACAGGAAATAATTCTTATCTATGCAATGCTTGATAT

Ace file of the UniGene sp_v3.0_unigene5341

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ and M4 domain-containing protein [Arabidopsis thaliana] sp\|Q9SRV1.1\|BPM4_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 4; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 4; Short=AtBPM4 gb\|AAF00643.1\|AC009540_20 unknown protein [Ara	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	MATH	IPR002083	-	-
Sma3	TRAF-type	IPR013322	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G03740.1	ATBPM4, BPM4 BTB-POZ and MATH domain 4 chr3:937106-939807 REVERSE LENGTH=465	61%
RefSeq	Arabidopsis thaliana	NP_566212.2	BTB/POZ and M4 domain-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002315535.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg:

Fln protein: MRRALNSLQEQLAEAVYGTGMYGRNPTNTESRYVADTVKGSHDLTIVGFSLAKGMGVGNFLASETFSVGGYDWAIYFYPDGKNPEDNSLYVSVFVALVSEGTDVRAKFELRLIDQSGKGRHKVHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLEVSDFVKDDTLKICCTVGVVVSAIHGPTLHYIHIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHKVVLAARSPVFKSMFFGPTQDDWNDKEISIEDTRPEVFKAMLHFIYKDTLPDLEEHGDLEELSDPSPCFLTPETMIEHLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAATNLEDVMKSEGFEYLKENCPSLQLELLQTVAQFKND*

Protein Length: 393

Fln nts: ACATGGGGGCTACACATGCAAATTAGGCTCAGTCCTCGTCAAGCCCCATCTGACCGACTCTCTAACGTGCCTACTTAAATACCCAATTAAACGAAGTTCCGGCGGCACTTGATTTGCATTTTCCTGGTTCGAGTCTACTGTTCGAATCGCGGGAACGGATAAACCAGTGGATCGCAGAAAAAATTGAGAAAATTTAAGGCTCCTTGAGTTTTCGACGGTCAAGAACAATTAATTGACAGGAGGTGTTGTCGCA_-_ATGAGGAGAGCTTTAAATTCCCTCCAAGAACAGCTCGCAGAAGCTGTCTACGGCACGGGAATGTACGGCAGGAATCCCACAAACACGGAATCCCGTTATGTGGCAGACACCGTAAAAGGATCCCACGATTTAACCATCGTGGGATTTTCTCTGGCCAAGGGCATGGGTGTCGGTAATTTCCTTGCGAGCGAGACTTTCAGCGTCGGAGGATACGACTGGGCCATTTACTTTTACCCCGACGGAAAAAACCCTGAAGACAATTCTCTGTATGTTTCGGTTTTCGTGGCTTTGGTCAGCGAGGGCACTGATGTGAGGGCTAAGTTTGAATTGAGGCTGATTGACCAGAGCGGCAAGGGGAGGCACAAAGTTCATAGCCATTTTGAACGCAGCCTTGAACGCGGGCCTTACACTTTGAAATACCACGGAAGCATGTGGGGTTACAAACGTTTCTACAGGCGAGCTCAGTTGGAAGTATCAGATTTTGTAAAGGATGATACTCTGAAAATATGTTGCACAGTTGGGGTTGTGGTTTCTGCTATTCACGGCCCTACATTGCACTATATTCATATTCCTGAATCAAACTTGGGCCAACAATTTGGGGCACTTCTTGAAGATGTGGAAAATGCAGATGTCACATTTGATGTATCAGGGGAAAAATTTCATGCTCACAAAGTGGTTCTGGCAGCACGTTCACCTGTATTTAAATCCATGTTTTTTGGGCCCACCCAGGATGATTGGAATGACAAAGAAATTAGCATTGAAGATACAAGGCCAGAGGTGTTTAAGGCTATGTTGCACTTTATTTACAAAGATACCCTTCCAGATTTAGAGGAGCATGGAGATTTAGAAGAGCTTTCTGATCCATCCCCTTGCTTTTTGACACCTGAGACAATGATCGAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCACAAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATTCAAGAACGATTGA___AACATAAAGAGAAAAGCTGGAGTGCACCAAGTCATGAATCAAATGCCTCTGACAGCAACATATAAGGACACGACAAACTTAGTGATACAATCTACAGTGAGAAATCTGAAAATTCTGATTAGTTGAATGACACTAATTTTGAGGTATTTCTGGCTTTGGGGAGAAATTAACCAAGATGTCCCTGAAGCAGAAATGAAAGATTTTTTCCACTCTGGAAATCCTTGAGGTGACGACTTTGTAAGATGCATCCCAGCTTGCGCTAATAACTATGGAGCAATCAGCATGCTTTTTTTTCAAATATTTTTTTGTAGACTTTCAAAATTGATAACGATTTCATTGTACTACGAACGATGCACTGTTTCTTTCTAAATACACATGGATATCCAAGCCACCGGATGGGTGGCCATTATGCCTTTGCTATTACGAGAGCATCTGTTGCGTTTTATGATATCCGATAAAATTCGAACTCTTGTCAAATTGTCGAGGGCTCTATGGTTATTGCTTCGATATGAAATGCAGGACACAACGAGGATACAGTCTTGCATCATATTCTCTGTGACGCATTACAAGAAATCAGAATGTGAATAAACAGGAAATAATTCTTATCTATGCAATGCTTGATAT

Fln Alignment:

Contig5341___MRRALNSLQEQLAEAVYGTGMYGRNPTNTESRYVADTVKGSHDLTIVGFSLAKGMGVGNFLASETFSVGGYDWAIYFYPDGKNPEDNSLYVSVFVALVSEGTDVRAKFELRLIDQSGKGRHKVHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLEVSDFVKDDTLKICCTVGVVVSAIHGPTLHYIHIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHKVVLAARSPVFKSMFFGPTQDDWNDKEISIEDTRPEVFKAMLHFIYKDTLPDLEEHGDLEELSDPSPCFLTPETMIEHLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAATNLEDVMKSEGFEYLKENCPSLQLELLQTVAQFKND
B8LMS2______________MKRALNSLQEQLAEAVYGTGINGRNPSNTESRYVADTVKGSHDLTIVGFSLAKGMGVGNFLASETFNVGGYDWAIYFYPDGKNPEDNSLYVSVFVALVSEGTDVRAKFELRLIDQSGRGKHKVHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLESSDFVKDDTLKICCTVGVVVSAIHGPRLHYIRIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFG-SSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKENCPSLQLELLQTVAQFKDD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1114		15		84	0.999986
1783	11		88		0.923564
1786		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain