SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5334

Length: 1712 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5334

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative chlorophyll synthase [Oryza sativa Japonica Group]	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Chlorophyll a oxygenase	-	-	3.109e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chlorophyllide-a oxygenase.	EC:1.13.12.14	-	1.353e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	1.353e-11	%
Sma3	Metabolic pathways	01100	1.353e-11	%
Sma3	Biosynthesis of secondary metabolites	01110	1.353e-11	%

Source	Gene names
Sma3	At1g44446; CAO; CAO2; CHLREDRAFT_195951; GSVIVT00015396001; LLS1; LOC_Os10g41760; LOC_Os10g41780; MICPUCDRAFT_60555; MICPUN_104843; OSJNBa0057L21.2; OSJNBa0057L21.9; OSTLU_5015; Os10g0567100; Os10g0567400; OsI_34699; OsI_34701; OsJ_32507; Ot12g01450; PHYP

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	chloroplast inner membrane	GO:0009706	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	thylakoid membrane	GO:0042651	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	chlorophyllide a oxygenase [overall] activity	GO:0010277	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3		IPR005806	-	-
Sma3	Pheophorbide a oxygenase	IPR013626	-	-
Sma3	Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site	IPR015881	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G44446.1	CH1, ATCAO, CAO Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain chr1:16848664-16851152 REVERSE LENGTH=536	70%
RefSeq	Arabidopsis thaliana	NP_175088.1	chlorophyllide a oxygenase [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002302233.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLA7

Fln msg: your sequence is longer than subject: 383 - 303

Fln protein: MEVIVNDKLLQDDIPSSQEQDVDYLNTCDVSLAISDCSSEKRKPPRRSLRVSGPLEPYSANLKNFWYPVAFSADLKDDTMVPFDCFEEPWVIFRGKDGRAGCVQNTCAHRACPLHLGSVTDGRIQCPYHGWEYSTDGVCEKMPSTHLLNVHIKALPCVEQDGLIWVWPGNAIPDAPLPSLEPPMGFNIHAQIVMELPVEHGLLLDNLLDLAHAPFTHTTTFAKGWEVPSFVKFMTPATGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKIEGRSTQNCSTHLHQLHVCIPSSRQKTRLLYRMSLDFAPLLQHIPFMHILWRHFADKVLNEDLRLVIGQQDRMVRGSNVWNLPVSYDKLGIRYRIWRNAVEDGQQRLPFSES*

Protein Length: 384

Fln nts: TGTAATGATGTGTATAAGGCATGGGAAGTAGCTCAACATGATATTCAGTACTGCGATTGGAGGGCCCGTCAAGATGTACTTACCATCAAGTTGCTTCATGATAAGGTGGTAGAAGTTTTGAACCCATTAGTTCGTGATCATAAATCTGTTGAGACCCTGAAAAGAGAATTAGCAGACTTGCAAAAAGACCTGGCAAAAGCACATGAGCAGGTTCACATATCTGAAGCAAGGGTTGAATGTGCCTTAAATAAATTGGCTGAA_-_ATGGAAGTCATTGTCAATGACAAATTGTTACAGGATGATATTCCATCAAGCCAAGAGCAGGATGTAGATTATCTGAACACTTGTGATGTATCTTTGGCAATTTCTGATTGTAGTTCAGAAAAGAGAAAACCTCCCAGAAGGAGTTTACGTGTCTCTGGTCCTCTTGAACCGTATTCTGCCAATCTGAAGAACTTCTGGTATCCAGTTGCATTTTCTGCTGATCTGAAGGACGATACAATGGTTCCTTTCGATTGTTTTGAAGAGCCATGGGTTATATTTCGTGGGAAAGATGGCAGAGCAGGATGCGTCCAGAATACATGTGCACACAGGGCATGTCCATTACACCTTGGTTCAGTGACTGACGGGCGCATCCAGTGCCCATACCATGGTTGGGAGTATTCAACAGATGGTGTGTGTGAGAAGATGCCGTCTACACATTTGTTGAATGTTCACATTAAAGCACTGCCATGTGTTGAGCAAGATGGGTTGATCTGGGTATGGCCTGGTAATGCAATTCCTGATGCACCTCTTCCATCTTTGGAACCTCCAATGGGATTTAATATTCATGCGCAGATTGTCATGGAGCTGCCTGTTGAACATGGCCTACTTTTGGACAACCTTTTGGATCTTGCTCATGCTCCATTTACTCACACTACTACTTTTGCTAAAGGCTGGGAAGTTCCCAGTTTTGTAAAGTTTATGACTCCAGCTACTGGGTTGCAAGGTTACTGGGATCCTTACCCTATAGATATGGAGTTCCGGCCACCTTGCATGGTGTTATCTACTATTGGAATCTCGAAACCTGGTAAAATAGAAGGCAGAAGCACTCAGAACTGTTCTACACATTTGCACCAATTACATGTCTGTATACCTTCTTCTAGACAGAAAACTCGGTTGCTTTATCGAATGTCACTGGACTTCGCACCTCTGCTGCAGCATATTCCATTTATGCACATTTTGTGGAGGCATTTTGCTGATAAGGTTTTAAATGAAGACCTTAGGCTGGTGATTGGGCAACAAGACAGGATGGTCAGAGGATCAAACGTGTGGAATTTGCCCGTATCCTATGACAAACTAGGTATTAGATACCGGATATGGAGAAATGCAGTTGAGGATGGGCAGCAGCGGCTGCCTTTCAGTGAATCTTAA___GGGTATCAACGGGTCGAATGGTTGAGCTGTTTTGCTGTTGGTATTTAGACCTTAACAATACAATAGAGCTAATATTTGATTCAAGAATTTGCATTCAGATTTGATTTTCAGGAAGCGAAAGTGTGCTTCATGTCTGAAATACCTTGTTTTCCTTCATGTGAAGCAGGCAAACGAGGGCCTGCACCTTTGTAAAATTATAAGCTGTATGGTATCGAGCATTAAGATAACATCAATTCTACGTATCCGGTCTTTCTCATTTTCGAGTGTACAGTATTGAATGCTTCACTGAAGCCATTGTTAAT

Fln Alignment:

Contig5334___MVPFDCFEEPWVIFRGKDGRAGCVQNTCAHRACPLHLGSVTDGRIQCPYHGWEYSTDGVCEKMPSTHLLNVHIKALPCVEQDGLIWVWPGNAIPDAPLPSLEPPMGFNIHAQIVMELPVEHGXXXXXXXXXXXXXXXXXXXXXKGWEVPSFVKFMTPATGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKIEGRSTQNCSTHLHQLHVCIPSSRQKTRLLYRMSLDFAPLLQHIPFMHILWRHFADKVLNEDLRLVIGQQDRMVRGSNVWNLPVSYDKLGIRYRIWRNAVEDGQQRLPFSES
B8LLA7______________MVPFDCFEEPWVIFRGKDSRAGCVQNTCAHRACPLHLGSVTDGRIQCPYHGWEYATDGVCEKMPSTHLLNVHIKALPCVEQDGLIWVWPGNEIPDAPLPSLAPPSGFNIHAQIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWEIPSFVKFMTPAAGLQGYWDPYPIDMEFCPPCMVLSTIGISKPGKIEGRSTQNCSTHLHQLHVCIPSSRQKTRLLYRMSLDFAPLLKHIPFMHILWRHFADKVLNEDLRLVIGQQDRMVRGANVWNLPVSYDKLGIRYRIWRNAVEDGQKQLPFSES

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
254	11			88	0.923564
255		11	88		0.923564
256	11		88		0.923564
257		88		11	0.923564
331	10			90	0.90298
332	90			10	0.90298
364		22		77	0.999999
555		87		12	0.992554
596			83	16	0.994512
690	20		80		0.995493
783			25	75	1.0
824	12			87	0.992554
829			87	12	0.992554
966			83	16	0.994512
1020		20		80	0.995493
1026	80			20	0.995493
1416	22			77	1.0
1426	11		88		0.999937
1476		27	72		1.0
1478	27		72		1.0
1538			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain