SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5331

Length: 2429 nt

UniGene Fasta

>sp_v3.0_unigene5331
CGTCGTGACCTTGGCTGTCACTCATTTTGAACTCCAACCCCATCCCCACTCATTTCATACGTGATCGCCACTCCTTACACAGAAGAGATCCTACTCAACTTTTGTAGCAGCAGCTCACAGATCCTTGAAGCATCTCATCTATTGTCTCGTCGCTGCCAGGCATGGCAGCTGTGGCAGCTCACCAACTGGGTCAGTGCATTACATGCCATGCTTGGAATGCGGACCTTTCCATGGTTGCTGTTTGCACTAATAACAATGAAGTGCACATTTACAGAGCATCACCAGATGGAAATTCTATATGGGACAGAATATACATACTTCAAAAGCATGATCAGCTTGTTTCAGGGATAGACTGGGGTACAAGATCAAATAAAATTGTGACTGTGTCACATGACAGGAATTCGTATGTTTGGAGTCTAGAAGGCACAGAATGGCTGCCAACACTCGTGATTCTCAGACTTAATCGTGCAGCTATCTGTGTTAAATGGAGTCCAAGAGAGAACAAATTTGCTGTTGGAAGTGGAGCTAAAAGCGTTTGCATTTGCTACTACGAGCAAGATAATAACTGGTGGGTCAGCAAACTTATCCGGAAAAAGCACAACTCATCTGTGACAAGTGTTGCTTGGCACCCTAACAATGTTCTTCTTGCGACGACATCTACGGATGGGAAGTGTCGGGTGTTTTCTACATTCATTAGAGGAGTTGATACAAGGGATTCCACAGCTGGCCCTTCTGGTGACATGAAGTTTGGAGAGCAACTGGTGCAGCTGGATCTTTCTTTTAGTTGGACTTTCGGGGTTAAATGGTCTCCAAGTGGTAACAGCATTGCTTATGTAGGGCATAATTCGACAATCTATTTTATTGATGATGTTGGACCATCAGCTGCGGCCCAGACACTAACCTTTTCGGACTTGCCCCTTCGTGATGTACTGTTTCTTTCAGATAGGGCGGTGGTGGGTGTAGGCTTTGATTGCAACCCTATGCTATTTACAGCGGACAACAGGGGCACATGGAGTTTTGTAAAATTTCTGGATGAAAGAAAATCCACTCCGGCCAGTTCTAAATATGGGTCACAGTTTTCAGAAGCTTTTGGAAAGTTTTATGGTCAAGCAAAACATGGCTCAAACATTGATGCAGTTGAGCCATCCAAAGCTCCTGGAGGTTCACATGAGAATTGCATAACCTGCATTTTACCACTACCGCACCCAGGGGAAACCACAATAAAGGGTTTTAGTACCTCGGGCCTGGATGGTAAAGTGGTGATCTGGGAGCTCAGCAATTTGAATGCCCTCTTTTCACAACTTGCATTATAAGAGATCCTCTGCTGTCAATAAAAGATGGATCTTTGACAACTAGACAAATATTTCTGGCCATCCATTTTACGAACACGTCCATATCCATTCTTTTACCGGGTTTTTCTCTTTGTGATTGCTTTAGCATCTTAATTGGTTGCAATTTTCCTGCCCGTTTGCCTTGATTTCTGGAAAACAAAATTCAGGCATTCTTTATCAGCCAATCACGATTTCCAGTTCTCAGCATTGGGTATTCAAGGACTAAGCACTGTACGTCTGTGGAGTTACGTATATTCCTGTAAATTATTGTCAACTCAGATACATTACTACGTTTGGATCTATTAAATTTGGTTGTCCAACATTGCATATCCATTTTCTTTCTTTTTTTAGGGTTTCTTGAAGCTGCTGGGGGACTAGAGTATACCATTACATAGCAGTCATTATTCCACTTCAGGGAGGAAGGGTTCACATTCCTCGCAATGTTAAAAGGGTATTCTGGCTTAGCAGATGCTATTACTTTGGTTTGACATGCACAAAGAAGAAAGTTGTCTTGTGATCTATATTGCATTAATCATTTGAAACGAAATCCTTAGGTTCAACTGTAAAAAAAGTTAAAACTATTGGTGGACCCTAAAATGCTCTCACAAGCAAGCTTATGCGGAGTTTTTTAGCTGGTTATATGTAGCATTGTATATGTCTTCCACTAGAGTCCAAGGCTGAGTATAATTTGATAATCCCTGGACTGTAATCTCATTTATCTTGAAAGCAAGCATCTTTACTAATTGTATCATATACACAAGAATGAATTATGTATTGACAATCCGAGAGTTTAGTGCTCTATTTTCAATTATTCTAAAGGCTTTAGGCCAGGTGTGCATTTTATTGGATAGGGAAAGTGACATTATTCAACCACTATGGTTTTAGAATTCTGGAATGGACGTCTTCAAGATCATTTTACTGTTATAACCCTGAAAATAGTGTGGAGATTGCAAGTCTTTCACGAATGAATACCAGGAATCTGACTTATTATCAATTTATTTCGGGGGGAAATAACATGGGCATGAACTGATTGCCTCATCAATCGCTTCGAATGAATTTATCTGAGCGAGTAAATTCTCTGATTGCTAGTTCCAGATA

Ace file of the UniGene sp_v3.0_unigene5331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	actin-related protein C1B [Arabidopsis thaliana] gb\|AAL27513.1\|AF439845_1 At2g31300/F16D14.14 [Arabidopsis thaliana] gb\|AAD20675.1\| putative ARP2/3 protein complex subunit p41 [Arabidopsis thaliana] gb\|AAN18136.1\| At2g31300/F16D14.14 [Arabidopsis thaliana	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Actin-related protein 2/3 complex, subunit 1	IPR017383	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G31300.1	ARPC1B, ARPC1 actin-related protein C1B chr2:13346313-13349787 REVERSE LENGTH=378	67%
RefSeq	Arabidopsis thaliana	NP_001189645.1	actin-related protein C1A [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002321070.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRC4

Fln msg:

Fln protein: MAAVAAHQLGQCITCHAWNADLSMVAVCTNNNEVHIYRASPDGNSIWDRIYILQKHDQLVSGIDWGTRSNKIVTVSHDRNSYVWSLEGTEWLPTLVILRLNRAAICVKWSPRENKFAVGSGAKSVCICYYEQDNNWWVSKLIRKKHNSSVTSVAWHPNNVLLATTSTDGKCRVFSTFIRGVDTRDSTAGPSGDMKFGEQLVQLDLSFSWTFGVKWSPSGNSIAYVGHNSTIYFIDDVGPSAAAQTLTFSDLPLRDVLFLSDRAVVGVGFDCNPMLFTADNRGTWSFVKFLDERKSTPASSKYGSQFSEAFGKFYGQAKHGSNIDAVEPSKAPGGSHENCITCILPLPHPGETTIKGFSTSGLDGKVVIWELSNLNALFSQLAL*

Protein Length: 385

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGAACTCCAACCCCATCCCCACTCATTTCATACGTGATCGCCACTCCTTACACAGAAGAGATCCTACTCAACTTTTGTAGCAGCAGCTCACAGATCCTTGAAGCATCTCATCTATTGTCTCGTCGCTGCCAGGC_-_ATGGCAGCTGTGGCAGCTCACCAACTGGGTCAGTGCATTACATGCCATGCTTGGAATGCGGACCTTTCCATGGTTGCTGTTTGCACTAATAACAATGAAGTGCACATTTACAGAGCATCACCAGATGGAAATTCTATATGGGACAGAATATACATACTTCAAAAGCATGATCAGCTTGTTTCAGGGATAGACTGGGGTACAAGATCAAATAAAATTGTGACTGTGTCACATGACAGGAATTCGTATGTTTGGAGTCTAGAAGGCACAGAATGGCTGCCAACACTCGTGATTCTCAGACTTAATCGTGCAGCTATCTGTGTTAAATGGAGTCCAAGAGAGAACAAATTTGCTGTTGGAAGTGGAGCTAAAAGCGTTTGCATTTGCTACTACGAGCAAGATAATAACTGGTGGGTCAGCAAACTTATCCGGAAAAAGCACAACTCATCTGTGACAAGTGTTGCTTGGCACCCTAACAATGTTCTTCTTGCGACGACATCTACGGATGGGAAGTGTCGGGTGTTTTCTACATTCATTAGAGGAGTTGATACAAGGGATTCCACAGCTGGCCCTTCTGGTGACATGAAGTTTGGAGAGCAACTGGTGCAGCTGGATCTTTCTTTTAGTTGGACTTTCGGGGTTAAATGGTCTCCAAGTGGTAACAGCATTGCTTATGTAGGGCATAATTCGACAATCTATTTTATTGATGATGTTGGACCATCAGCTGCGGCCCAGACACTAACCTTTTCGGACTTGCCCCTTCGTGATGTACTGTTTCTTTCAGATAGGGCGGTGGTGGGTGTAGGCTTTGATTGCAACCCTATGCTATTTACAGCGGACAACAGGGGCACATGGAGTTTTGTAAAATTTCTGGATGAAAGAAAATCCACTCCGGCCAGTTCTAAATATGGGTCACAGTTTTCAGAAGCTTTTGGAAAGTTTTATGGTCAAGCAAAACATGGCTCAAACATTGATGCAGTTGAGCCATCCAAAGCTCCTGGAGGTTCACATGAGAATTGCATAACCTGCATTTTACCACTACCGCACCCAGGGGAAACCACAATAAAGGGTTTTAGTACCTCGGGCCTGGATGGTAAAGTGGTGATCTGGGAGCTCAGCAATTTGAATGCCCTCTTTTCACAACTTGCATTATAA___GAGATCCTCTGCTGTCAATAAAAGATGGATCTTTGACAACTAGACAAATATTTCTGGCCATCCATTTTACGAACACGTCCATATCCATTCTTTTACCGGGTTTTTCTCTTTGTGATTGCTTTAGCATCTTAATTGGTTGCAATTTTCCTGCCCGTTTGCCTTGATTTCTGGAAAACAAAATTCAGGCATTCTTTATCAGCCAATCACGATTTCCAGTTCTCAGCATTGGGTATTCAAGGACTAAGCACTGTACGTCTGTGGAGTTACGTATATTCCTGTAAATTATTGTCAACTCAGATACATTACTACGTTTGGATCTATTAAATTTGGTTGTCCAACATTGCATATCCATTTTCTTTCTTTTTTTAGGGTTTCTTGAAGCTGCTGGGGGACTAGAGTATACCATTACATAGCAGTCATTATTCCACTTCAGGGAGGAAGGGTTCACATTCCTCGCAATGTTAAAAGGGTATTCTGGCTTAGCAGATGCTATTACTTTGGTTTGACATGCACAAAGAAGAAAGTTGTCTTGTGATCTATATTGCATTAATCATTTGAAACGAAATCCTTAGGTTCAACTGTAAAAAAAGTTAAAACTATTGGTGGACCCTAAAATGCTCTCACAAGCAAGCTTATGCGGAGTTTTTTAGCTGGTTATATGTAGCATTGTATATGTCTTCCACTAGAGTCCAAGGCTGAGTATAATTTGATAATCCCTGGACTGTAATCTCATTTATCTTGAAAGCAAGCATCTTTACTAATTGTATCATATACACAAGAATGAATTATGTATTGACAATCCGAGAGTTTAGTGCTCTATTTTCAATTATTCTAAAGGCTTTAGGCCAGGTGTGCATTTTATTGGATAGGGAAAGTGACATTATTCAACCACTATGGTTTTAGAATTCTGGAATGGACGTCTTCAAGATCATTTTACTGTTATAACCCTGAAAATAGTGTGGAGATTGCAAGTCTTTCACGAATGAATACCAGGAATCTGACTTATTATCAATTTATTTCGGGGGGAAATAACATGGGCATGAACTGATTGCCTCATCAATCGCTTCGAATGAATTTATCTGAGCGAGTAAATTCTCTGATTGCTAGTTCCAGATA

Fln Alignment:

Contig5331___MAAVAAHQLGQCITCHAWNADLSMVAVCTNNNEVHIYRASPDGNSIWDRIYILQKHDQLVSGIDWGTRSNKIVTVSHDRNSYVWSLEGTEWLPTLVILRLNRAAICVKWSPRENKFAVGSGAKSVCICYYEQDNNWWVSKLIRKKHNSSVTSVAWHPNNVLLATTSTDGKCRVFSTFIRGVDTRDSTAGPSGDMKFGEQLVQLDLSFSWTFGVKWSPSGNSIAYVGHNSTIYFIDDVGPSAAAQTLTFSDLPLRDVLFLSDRAVVGVGFDCNPMLFTADNRGTWSFVKFLDERKSTPASSKYGSQFSEAFGKFYGQAKHGSNIDAVEPSKAPGGSHENCITCILPLPHPGETTIKGFSTSGLDGKVVIWELSNLNALFSQLAL
B8LRC4______________MAAVAAHQLGQCITCHAWNADLSMVAVCTNNNEVHIYRASPDGNSIWDRIYILQKHDQLVSGIDWGTRLNKIVTVSHDRNSYVWSLEGTEWMPTLVILRLNRAAICVKWSPRENKFAVGSGAKSVCICYYEQDNNWWVSKLIRKKHNSTVTSVAWHPNNVLLATTSTDGKCRVFSTFIRGVDTRDSTVGPSGDMKFGEQLVQLDLSFSWTFGVKWSPSGSSIAYVGHNSTIYFIDDVGPSACAQTVAFSGLPLRDVLFLSERVVVGVGYDCNPMLFIADNRGTWSFVKFLDEKKSSPASSKYGSQFSEAFGKFYGQAKHGANIDAVEPSKAPGGSHENCITCILPLPYPGETTVKRFSTSGLDGKVVIWELSNLNNLFSQLAI

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
1009		75		25	1.0
1136	88		11		0.923564
1143		87		12	0.992554
1202			88	11	0.923564
1256	85		14		0.993533
1330	90	10			0.90298
1331	90			10	0.90298
1333	60		10	20	0.999999
1334	90		10		0.90298
1335	90	10			0.90298
1336	90			10	0.90298
1339		11		88	0.923564
1340			88	11	0.923564
1341		11	88		0.923564
1345	11			77	0.968132
1392	25	75			0.996473
1540			11	88	0.923564
1560	90		10		0.90298
1561		90		10	0.90298
1562		10		90	0.90298
1567		10	90		0.90298
1574		10	90		0.90298
1575	90			10	0.90298
1578		10		90	0.90298
1581		10	90		0.90298
1582	10			90	0.90298
1586	10			90	0.90298
1589		90	10		0.90298
1874	42	57			1.0
1875			83	16	0.994512
2105		20		80	0.995493
2108	80	20			0.995493
2109			20	80	0.995493
2114	80	20			0.995493
2115	80			20	0.995493
2117		80	20		0.995493
2118		80	20		0.995493
2119		20	80		0.995493
2120	80			20	0.995493
2122	75			25	0.996473
2123		20	80		0.995493
2124	20			80	0.995493
2125		20		80	0.995493
2127	80	20			0.995493
2128	20		80		0.995493
2154	20		80		0.995493
2188		20	80		0.995493
2189	80		20		0.995493
2190	80			20	0.995493
2191	80	20			0.995493
2197	80	20			0.995493
2201			20	80	0.995493
2202			20	80	0.995493
2204	80			20	0.995493
2205	80		20		0.995493
2206		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain