SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5328

Length: 3091 nt

UniGene Fasta

>sp_v3.0_unigene5328
CCATACTTGCCAACGAACACTGCTACACTGTTGCTTTATTGTGTTCTACTTCAATATTACGGGTACCGTCGACGCAGGCACGCCTCTTCGCGCGTCAGTACAATGCTTTTGATTTAAAACACAAACCCTGGTTGTCGCGACCGCCGGCGCTTATTTTCTGCAGGAGATCCCTCGATCGAATTCCAATCCTGGTTCTGCTGCCATGGGGTTAGACAAGATGAAAAGCCTCCAGGTGAGCTCTGTCACACAGCTGAAATTCCAGGAGAAGCTCAAGAAGAAAGCCAAATCGGGAGGCTTCGAGTCCCTGGGACTGAGTCCCCCGATTTTCCGAGGAGTGAAACGGAAGGGTTATCGAATTCCGACCCCCATTCAGCGCAAGACTATGCCCCTTATTATGGCCGGACTGGACGTCGTGGCCATGGCTCGGACGGGGTCTGGTAAGACGGCGGCCTTTCTCGTCCCCATGCTCGAGAAATTAAGGGAGCATTCTGCAAGCGGTGGCGTTAGGGCTCTGATTCTGTCGCCGACTAGGGAACTCGCGCTTCAGACGTTTAAGTTTTCGAAAGAGCTTGGTCGTTACACAGACCTTCAGACTACTTTGCTTGTAGGTGGTGACAGCATGGAGACTCAATTTGAAGAACTAGCGAAAAGTCCAGATGTTATTATTGCAACTCCTGGCCGTCTCATGCATCATCTTGCCGAGGTAGACGAAATGTCTCTGAGAACTGTGGAATATGTTGTTTTTGATGAGGCAGACCGTTTATTTGAGATGGGTTTTGCAGACCAATTGCGAAAAATACTTGCCCAGTTGAGCGATAACCGGCAGACTTTGCTTTTTAGTGCGACTCTACCTCGGTTGCTTGCTGAATTTGCAAAGGCAGGGCTTCGGGATCCTCAAATTGTACGACTTGATTTAGAAACTAAGATCAGCCCCGATCTCAAACTCACGTTCTTTACCGTGCGACCCGAAGAGAAATGCGCTGCATTGCTCCACCTGGTGAGAGAGCAGATTGGTTCGGATCAACAGACATTAATTTTTGTCGCAACAAAGCATCACGTAGAATTCATCAATGAATTGTTTAAGGAAGAAGGGATAGGTATGTCTATTGTTTACGGGGACATGGATCAAGCTGCCCGCAAAATCCATCTTGCAAAGTTTAGAGCAAGGAAGACGATGTTACTTCTTGTAACTGATGTTGCTGCTAGGGGGATTGACATTCCTCTGCTAGATAACGTAGTGAATTATGATTTTCCTCCAAAACCCAAACTTTTTGTTCATAGAGTGGGGCGCGCTGCTCGTGCTGGCCGGACTGGCACAGCTTATTCGTTTGTCACATCAGAAGACATGCCGTATCTTTTGGATCTCCATTTGTTTCTATCAAAACCTATTCGACCGGCTCCAACCGAAGAAGAGGTTGCAAGTGATAGGGAGAATGTATTGACCAAGATCAATGAAGCAATGGAAAAAGGGGAGTCCGTGTATGGACGTTTTCCACAGTCAGTTCTGGATCTTGCTTCTGAAAGAATTCGAGAGCTTATTGACGGAAGTACAGAAGTTTTTGCCTTGCAGAAGGCATGTACCAATGCATTTCATTTGTATTCCAGGACAAAACCAACTCCTTCAACGGAATCTGTAAAAAGAGCAAAGGGATTGCCTCGAGAAGGGCTGCATCCAATTTTTAAAAATGAAATTGGGACTAACGAGGCAGCAGCTTTGGCTTTTTCCGAGCGCTTAAAAGAGTTCAGGCCAAAGCAGACAGTTCTGGAGACTGAAGGGGAAGCAGCAAAAGCAAAACATCTTCTTGGACCTGTTAGCCAGGCTGTTGATGTAATGAAAAAAAAGAGAGCTATACATGAACAAGTCATAAGTGCTTCCCAACAACAGAGGACAACTCAGAAGGCGGAGAACAATTCAAATGATACTAACTCTGAAGCAGTTGCCCCAGGAAAGAGGAAAAGGAAAGGGATTGAAACTTTGGTTAAGAAGAATTTCAGGGATAAAGAGTATTATATAAGTGCCATACCTTCAAATCAACACTCAGAGTCTGGATTAACAGTCAGAGACAGCGAGGACTTTCGTTCAAACAGGATCGATGCAGCTGTTCTTGACCTTGTTGCAGATGACAGTGGTGCTTTGCAAAAGCAGAAATCAACATACCACTGGGACAAGCGAAGTAAAAAATATGTTAAACTAAACAATGGAGAGCGGGTAACAGCTTCAGGAAAGGTGAAAACTGAAAGCGGTTCAATGATAAAGCCTGGCAGTGGTGGTTTATACAAGAAGTGGAAGGAGCGTTCACACATGCATATATCTGTTCATGGACAAGGTGATGATAATCATGCCAAAGACAGTGAAGGTGCAGCAGGGAATCAAGCTAGAGGAAATAGTAGAGATTTTCATAGGCATAAAAGGCAGAGACCAATTCCCAATGCAAATGTCCGCGATGAACTCCGAGGTGTTGAGCAGATTCGTAAACAAAGGCAACAAAAAGCAACAAAACAGATTCTCGGTTCTAGTAAAAAAAGAACCCATGGAAAGGGATTTAAAGGCGGCAGGGGTAACAAAGATGATAAGAAGACATTCAAGGGCAAGGGTAAAAGAAAATGAGCATGTTTCATTCATTATCGGTTGAAGAATTATTCATTGCTTTAAAGAAGTAGTCACATGCAGGTGTTGGGGGATTGGATAGTACCGCTAATGGTACGGTTTCTCCTCCTTTTGCGCCGTGAAAGATCGGCCAAGTAATATTGTTGTTTTTACAAATCAGTTTTGTTCTATATCAGAATATGCAGTGGCATTGTTTTATCGAATGCTAAGTGTTTGCAGAAATGTAATGAATTTGTTGAAAATGGGGAAATTCATGTGGTCTTATGTTCCTCAAGGACTTGTTCAAGATTCCTACAGGGTTCAAATTTTCCGTTGTTTGAATTGTAACTTTATTGTAAGGATTGAGAATGAAAAACATAGAGGACGACTAATTTGATTTGGATTGTTCTGTTAGTGTCAATTTTCAAGCGTCGAAGTATATTTTTGAACTTCTGTGAAAATTATTCATTCCATTTGATCCCATTTGAAATGCATACAAGTTAT

Ace file of the UniGene sp_v3.0_unigene5328

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9T0X5_RICCO	-	-	0.0	65%
FL-Next	tr=Dead box ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean).	-	-	0.0	67%

Source	Gene names
Sma3	At1g77050; CHLREDRAFT_123188; F22K20.13; GSVIVT00014339001; GSVIVT00014340001; HMA10; LOC_Os08g32090; MICPUCDRAFT_16058; MICPUN_78680; OSTLU_40877; Os08g0416100; OsI_028228; OsI_29242; OsJ_026224; OsJ_27320; P0433E10.15; PHATRDRAFT_26853; PHYPADRAFT_30506

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	DBP10CT	IPR012541	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77030.1	" hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases chr1:28947887-28951526 REVERSE LENGTH=845"	63%
RefSeq	Arabidopsis thaliana	NP_177829.5	DEAD-box helicase domain-containing protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002307470.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T0X5

Fln msg:

Fln protein: MGLDKMKSLQVSSVTQLKFQEKLKKKAKSGGFESLGLSPPIFRGVKRKGYRIPTPIQRKTMPLIMAGLDVVAMARTGSGKTAAFLVPMLEKLREHSASGGVRALILSPTRELALQTFKFSKELGRYTDLQTTLLVGGDSMETQFEELAKSPDVIIATPGRLMHHLAEVDEMSLRTVEYVVFDEADRLFEMGFADQLRKILAQLSDNRQTLLFSATLPRLLAEFAKAGLRDPQIVRLDLETKISPDLKLTFFTVRPEEKCAALLHLVREQIGSDQQTLIFVATKHHVEFINELFKEEGIGMSIVYGDMDQAARKIHLAKFRARKTMLLLVTDVAARGIDIPLLDNVVNYDFPPKPKLFVHRVGRAARAGRTGTAYSFVTSEDMPYLLDLHLFLSKPIRPAPTEEEVASDRENVLTKINEAMEKGESVYGRFPQSVLDLASERIRELIDGSTEVFALQKACTNAFHLYSRTKPTPSTESVKRAKGLPREGLHPIFKNEIGTNEAAALAFSERLKEFRPKQTVLETEGEAAKAKHLLGPVSQAVDVMKKKRAIHEQVISASQQQRTTQKAENNSNDTNSEAVAPGKRKRKGIETLVKKNFRDKEYYISAIPSNQHSESGLTVRDSEDFRSNRIDAAVLDLVADDSGALQKQKSTYHWDKRSKKYVKLNNGERVTASGKVKTESGSMIKPGSGGLYKKWKERSHMHISVHGQGDDNHAKDSEGAAGNQARGNSRDFHRHKRQRPIPNANVRDELRGVEQIRKQRQQKATKQILGSSKKRTHGKGFKGGRGNKDDKKTFKGKGKRK*

Protein Length: 803

Fln nts: CCATACTTGCCAACGAACACTGCTACACTGTTGCTTTATTGTGTTCTACTTCAATATTACGGGTACCGTCGACGCAGGCACGCCTCTTCGCGCGTCAGTACAATGCTTTTGATTTAAAACACAAACCCTGGTTGTCGCGACCGCCGGCGCTTATTTTCTGCAGGAGATCCCTCGATCGAATTCCAATCCTGGTTCTGCTGCC_-_ATGGGGTTAGACAAGATGAAAAGCCTCCAGGTGAGCTCTGTCACACAGCTGAAATTCCAGGAGAAGCTCAAGAAGAAAGCCAAATCGGGAGGCTTCGAGTCCCTGGGACTGAGTCCCCCGATTTTCCGAGGAGTGAAACGGAAGGGTTATCGAATTCCGACCCCCATTCAGCGCAAGACTATGCCCCTTATTATGGCCGGACTGGACGTCGTGGCCATGGCTCGGACGGGGTCTGGTAAGACGGCGGCCTTTCTCGTCCCCATGCTCGAGAAATTAAGGGAGCATTCTGCAAGCGGTGGCGTTAGGGCTCTGATTCTGTCGCCGACTAGGGAACTCGCGCTTCAGACGTTTAAGTTTTCGAAAGAGCTTGGTCGTTACACAGACCTTCAGACTACTTTGCTTGTAGGTGGTGACAGCATGGAGACTCAATTTGAAGAACTAGCGAAAAGTCCAGATGTTATTATTGCAACTCCTGGCCGTCTCATGCATCATCTTGCCGAGGTAGACGAAATGTCTCTGAGAACTGTGGAATATGTTGTTTTTGATGAGGCAGACCGTTTATTTGAGATGGGTTTTGCAGACCAATTGCGAAAAATACTTGCCCAGTTGAGCGATAACCGGCAGACTTTGCTTTTTAGTGCGACTCTACCTCGGTTGCTTGCTGAATTTGCAAAGGCAGGGCTTCGGGATCCTCAAATTGTACGACTTGATTTAGAAACTAAGATCAGCCCCGATCTCAAACTCACGTTCTTTACCGTGCGACCCGAAGAGAAATGCGCTGCATTGCTCCACCTGGTGAGAGAGCAGATTGGTTCGGATCAACAGACATTAATTTTTGTCGCAACAAAGCATCACGTAGAATTCATCAATGAATTGTTTAAGGAAGAAGGGATAGGTATGTCTATTGTTTACGGGGACATGGATCAAGCTGCCCGCAAAATCCATCTTGCAAAGTTTAGAGCAAGGAAGACGATGTTACTTCTTGTAACTGATGTTGCTGCTAGGGGGATTGACATTCCTCTGCTAGATAACGTAGTGAATTATGATTTTCCTCCAAAACCCAAACTTTTTGTTCATAGAGTGGGGCGCGCTGCTCGTGCTGGCCGGACTGGCACAGCTTATTCGTTTGTCACATCAGAAGACATGCCGTATCTTTTGGATCTCCATTTGTTTCTATCAAAACCTATTCGACCGGCTCCAACCGAAGAAGAGGTTGCAAGTGATAGGGAGAATGTATTGACCAAGATCAATGAAGCAATGGAAAAAGGGGAGTCCGTGTATGGACGTTTTCCACAGTCAGTTCTGGATCTTGCTTCTGAAAGAATTCGAGAGCTTATTGACGGAAGTACAGAAGTTTTTGCCTTGCAGAAGGCATGTACCAATGCATTTCATTTGTATTCCAGGACAAAACCAACTCCTTCAACGGAATCTGTAAAAAGAGCAAAGGGATTGCCTCGAGAAGGGCTGCATCCAATTTTTAAAAATGAAATTGGGACTAACGAGGCAGCAGCTTTGGCTTTTTCCGAGCGCTTAAAAGAGTTCAGGCCAAAGCAGACAGTTCTGGAGACTGAAGGGGAAGCAGCAAAAGCAAAACATCTTCTTGGACCTGTTAGCCAGGCTGTTGATGTAATGAAAAAAAAGAGAGCTATACATGAACAAGTCATAAGTGCTTCCCAACAACAGAGGACAACTCAGAAGGCGGAGAACAATTCAAATGATACTAACTCTGAAGCAGTTGCCCCAGGAAAGAGGAAAAGGAAAGGGATTGAAACTTTGGTTAAGAAGAATTTCAGGGATAAAGAGTATTATATAAGTGCCATACCTTCAAATCAACACTCAGAGTCTGGATTAACAGTCAGAGACAGCGAGGACTTTCGTTCAAACAGGATCGATGCAGCTGTTCTTGACCTTGTTGCAGATGACAGTGGTGCTTTGCAAAAGCAGAAATCAACATACCACTGGGACAAGCGAAGTAAAAAATATGTTAAACTAAACAATGGAGAGCGGGTAACAGCTTCAGGAAAGGTGAAAACTGAAAGCGGTTCAATGATAAAGCCTGGCAGTGGTGGTTTATACAAGAAGTGGAAGGAGCGTTCACACATGCATATATCTGTTCATGGACAAGGTGATGATAATCATGCCAAAGACAGTGAAGGTGCAGCAGGGAATCAAGCTAGAGGAAATAGTAGAGATTTTCATAGGCATAAAAGGCAGAGACCAATTCCCAATGCAAATGTCCGCGATGAACTCCGAGGTGTTGAGCAGATTCGTAAACAAAGGCAACAAAAAGCAACAAAACAGATTCTCGGTTCTAGTAAAAAAAGAACCCATGGAAAGGGATTTAAAGGCGGCAGGGGTAACAAAGATGATAAGAAGACATTCAAGGGCAAGGGTAAAAGAAAATGA___GCATGTTTCATTCATTATCGGTTGAAGAATTATTCATTGCTTTAAAGAAGTAGTCACATGCAGGTGTTGGGGGATTGGATAGTACCGCTAATGGTACGGTTTCTCCTCCTTTTGCGCCGTGAAAGATCGGCCAAGTAATATTGTTGTTTTTACAAATCAGTTTTGTTCTATATCAGAATATGCAGTGGCATTGTTTTATCGAATGCTAAGTGTTTGCAGAAATGTAATGAATTTGTTGAAAATGGGGAAATTCATGTGGTCTTATGTTCCTCAAGGACTTGTTCAAGATTCCTACAGGGTTCAAATTTTCCGTTGTTTGAATTGTAACTTTATTGTAAGGATTGAGAATGAAAAACATAGAGGACGACTAATTTGATTTGGATTGTTCTGTTAGTGTCAATTTTCAAGCGTCGAAGTATATTTTTGAACTTCTGTGAAAATTATTCATTCCATTTGATCCCATTTGAAATGCATACAAGTTAT

Fln Alignment:

Contig5328___SGGFESLGLSPPIFRGVKRKGYRIPTPIQRKTMPLIMAGLDVVAMARTGSGKTAAFLVPMLEKLREHSASGGVRALILSPTRELALQTFKFSKELGRYTDLQTTLLVGGDSMETQFEELAKSPDVIIATPGRLMHHLAEVDEMSLRTVEYVVFDEADRLFEMGFADQLRKILAQLSDNRQTLLFSATLPRLLAEFAKAGLRDPQIVRLDLETKISPDLKLTFFTVRPEEKCAALLHLVREQIGSDQQTLIFVATKHHVEFINELFKEEGIGMSIVYGDMDQAARKIHLAKFRARKTMLLLVTDVAARGIDIPLLDNVVNYDFPPKPKLFVHRVXXXXXXXXXXXXYSFVTSEDMPYLLDLHLFLSKPIRPAPTEEEVASDRENVLTKINEAMEKGESVYGRFPQSVLDLASERIRELIDGSTEVFALQKACTNAFHLYSRTKPTPSTESVKRAKGLPREGLHPIFKNEIGTNEAAALAFSERLKEFRPKQTVLETEGEAAKAKHLLGPVSQAVDVMKKKRAIHEQVISASQQQRTTQKAENNSNDTNSEAVAPGKRKRKGIETLVKKNFRDKEYYISAIPSNQHSESGLTVRDSEDFRSNRIXXXXXXXXXXXSGALQKQKSTYHWDKRSKKYVKLNNGERVTASGKVKTESGSMIKPGSGGLYKKWKERSHMHISVHGQGDDNHAKDSEGAAG-NQARGNSRDFHRHKRQRPIPNANVRDELRGVEQIRKQRQQKATK----QILGSSKKRTHGKGFKGGR
B9T0X5______________SGGFESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLERLKQHVSQGGARALILSPTRDLALQTLKFTKELGRFTDLRASLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFFTLRQEEKYAALLYLVREHISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRAQKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANGETIYGRFPQTVLDLVSDRVREVIDSSAELTSLQKTCTNAFRLYTKTKPLPAKESIRRVKDLPHEGIHPIFKNGLGGGELTALAFSERLKAFRPKQTILEAEGEAAKSKNARGPSSQWVDVMKRKRAIHEKIINLVHQHRSIQQEDKEVESEIPSSSGKEKKEARGSKRKA-KSFKDEEYYISSVPTNHHTEAGLSVRANEGFGSNRLEAAVLDLVADDSGGMQKQKTVYHWDKRGKKYIKLNNGERVTASGKVKTEGGAKVKANKTGIYKKWKERSHRKVSLKGASDEGNAEQTSTFSGDNRLRGNNRKFKGGKKQNFMPNANVRSEIKSLEQVRKERQKKASQMSHMKSKGAGGKKKFGKNGKRGK

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
2169	85		14		0.993533
2593	83	16			0.994512
2595		16	83		0.994512
2598	75		25		0.996473
2600	75	25			0.996473
2601	75	25			0.996473
2602			75	25	0.996473
2603	75			25	0.996473
2604	75		25		0.996473
2605	75		25		0.996473
2606	75	25			0.996473
2610			75	25	0.996473
2614	25		75		0.996473
2647		20		80	0.995493
2650			20	80	0.995493
2652			20	80	0.995493
2654	80	20			0.995493
2655	80	20			0.995493
2656			80	20	0.995493
2657	80			20	0.995493
2658	80		20		0.995493
2660		20		80	0.995493
2661	80			20	0.995493
2669		33	66		0.997452
2670	33	66			0.997452
2688	33		66		0.997452
2699	60	40			1.0
2700	60		40		1.0
2703	40		60		1.0
2704		40		60	1.0
2705	60	40			1.0
2706		60		40	1.0
2707			60	40	1.0
2709			40	60	1.0
2710		40		60	1.0
2712		60	40		1.0
2718	40	60			1.0
2755	80		20		0.995493
2866			20	80	0.995493
2996	9			90	0.999842
2998	4	9		86	0.999642
3008	88		11		0.923564
3037	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain