SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5313

Length: 2397 nt

UniGene Fasta

>sp_v3.0_unigene5313
ATGGGGCTCTCGCGGTCGTTACATAATGGCCTGCCGATCATCCAACCTCTGTTACTTGACGGCCAGGCGAAAAAATGGGTCGGCTCCAGCTTTGGCTCTGGCTTCTTCACCTGTTTCTCTCTGTGCTTCACCTGGGCGCGATCGGGAAACCCATACCCACGACACTTGACGGGCCTTTCACCCCCGTCACGGTTCCGTTAGATGACACAATCCGAGGACAGGCTTCGGACTTGCCAGCAGACGATCCTCGCCTGCAGAGACCCGTCACTGAGATTTCCCCTGAGCAGATTTCTGTCTCGCTATCGACTCCCGATTCTATTTGGGTTTCCTGGATTACAGGAGAGTTTCAAGTGGGCGACAATATACGGCCCCGGAATGCGTCCAGTGTGGCCAGCATGGTTAATTATGGGCTTTTGCAAGACAATCTGAACTATGAAGCCACCGGGTATTCGTTAGTTTACAGCCAACTCTATCCCTTCGTAGGCCTCCAGAATTATACATCCGGGATTATCCATCATGTTCGCCTTACAGGGTTGCGGCCGAGCACGGTATACTATTACAGATGCGGAGATCCCCATCAGAATGCAATGAGTAAAGTCCTGAGCTTCAAGACCATGCCGGCTCCGGGTTCTTCGCGGTTTCCTGAGAGAATCGCCATTGTTGGAGACCTTGGTCTGACTTACAATACGACATCTACCATTGATCACGTTCGTAGTAACCATCCTGACTTGATTCTGCTTGTTGGGGATGTGAGCTATGCAAATCTTTATTTGACGAACGGGACCGGCTCGGCCTGCTATTCTTGTTCTTTTCCGGATTCTCCTATTCACGAGACCTACCAGCCTCGCTGGGATTACTGGGGAAGGTTTATGGAACCCTTGATCTCACGAGTTCCTATCATGGTTGTGGAGGGCAATCATGAAATCGAAGAGCAAGTTGGAAATAAGACATTTACAGCTTACAGTTCAAGATTTGCATTTCCAAGTCAAGAGAGTGGATCTGTTAGCACATTCTATTACTCCTTCAATGCTGGAGGCATCCATTTCATCATGCTTGGAGGATACATAGATTACAATAAAACAGGGGAACAATATAAATGGCTGGAGCATGATTTAGCAGATGTTGACAGGAGCATGACTCCTTGGCTTGTTGCTGCGTGGCACCCACCCTGGTACAGCAGTTATAAAGCCCATTATCGTGAGGCTGAATGCATGAAACAGGAAATGGAGGAGCTGCTGTACAGATATGGTGTTGATGTTGTATTCAACGGCCATGTCCATGCATACGAGAGATCAAACCGAGTCTTTAACTACACATTGGACCCATGTGCTCCTGTTTACATTACAGTGGGGGATGGTGGTAACAGAGAAAAGATGGCAATACCACATGCTGATGAACCTGGTAACTGTCCTGATCCGGCTTCCACACCTGACAGCTATATGGGTGGATTCTGTGCATACAACTTTACATCTGGTCCAGCAGCTGGAAAGTTTTGTTGGGATAGGCAGCCTGACTTTAGCGCATATAGAGAGAGCAGCTTTGGGCATGGAATTTTTGAGGCGAAGAATGAAACATATGCTCTGTGGTCCTGGCATCGGAATCAGGATGCGTATAACAGTATAGGGGATGAGATCTATATTGTGAGGCAACCAGGAATCTGCCCAAATCAGCCGAAGATCGTTCAAACAGTTCAAAGTCCAAAAACTCAGAAGTTATGAACTAGTAACCACATTCATCCGGGAAAAATTAAAACCCTGAATGGATTGCTTTCAGGTCACGGGGAAGAGGCACCAGCTTTGACTTCCTCTTAATGCCCATTTGAGGAATTGAGTTTGTCATTGAGGGCATGCATAATAGTATGTATTTTAGGAAATATGCTCCTTGTTCATTATTTGATATATTTCACCAAGGGCACATTGCCATTAATATGCATTAATTTTGCCATTTATATAAAAATTCGATGGCATTTCAATCCTAAATATTTTGACCTGTGTGGATCTCCTGAAGCATCGAATTGTGTTTCAGCCTCAAGTGGAGAAAAAGGTTCCCAAGCCATGGTAAAAATGTGAGGAAAAATAACAGCAAATTCTTCCTCCAGAGGAGGTAGAAAATAATGATTAAATCAACTCCAGTTGGAAAGAATGCACAGGTTCAGTTTGCATCCTCTTCTTTGACCCCTATCTTGGATTCCCAGTTTGCGGGGATTCATGGGAAGATAAATAAAAGATAAAATCGTATCTTTTGGTTGTGAACTCCACAGGGAAAGAATTGGCAGGTTCAGTTTGTGCCGTCTCCCTCATCCCCAATATTGGATTCCCAATTTTTGTTTGCAGGGGCTCATGGATTGCCTATTTTTGTTTGGTGATGTCTATACGTTTCAGAGATTTTTGTTTGGTG

Ace file of the UniGene sp_v3.0_unigene5313

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallophos multi-domain protein	-	-	5.0e-20	17%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Sma3	Predicted protein	-	-	0.0	-

Source	Gene names
Sma3	POPTRDRAFT_778303;

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07130.1	ATPAP15, PAP15 purple acid phosphatase 15 chr3:2255763-2257981 REVERSE LENGTH=532	72%
RefSeq	Arabidopsis thaliana	NP_187369.1	purple acid phosphatase 15 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002323987.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA01

Fln msg: your sequence is longer than subject: 548 - 423

Fln protein: MGRLQLWLWLLHLFLSVLHLGAIGKPIPTTLDGPFTPVTVPLDDTIRGQASDLPADDPRLQRPVTEISPEQISVSLSTPDSIWVSWITGEFQVGDNIRPRNASSVASMVNYGLLQDNLNYEATGYSLVYSQLYPFVGLQNYTSGIIHHVRLTGLRPSTVYYYRCGDPHQNAMSKVLSFKTMPAPGSSRFPERIAIVGDLGLTYNTTSTIDHVRSNHPDLILLVGDVSYANLYLTNGTGSACYSCSFPDSPIHETYQPRWDYWGRFMEPLISRVPIMVVEGNHEIEEQVGNKTFTAYSSRFAFPSQESGSVSTFYYSFNAGGIHFIMLGGYIDYNKTGEQYKWLEHDLADVDRSMTPWLVAAWHPPWYSSYKAHYREAECMKQEMEELLYRYGVDVVFNGHVHAYERSNRVFNYTLDPCAPVYITVGDGGNREKMAIPHADEPGNCPDPASTPDSYMGGFCAYNFTSGPAAGKFCWDRQPDFSAYRESSFGHGIFEAKNETYALWSWHRNQDAYNSIGDEIYIVRQPGICPNQPKIVQTVQSPKTQKL*

Protein Length: 549

Fln nts: ATGGGGCTCTCGCGGTCGTTACATAATGGCCTGCCGATCATCCAACCTCTGTTACTTGACGGCCAGGCGAAAAA_-_ATGGGTCGGCTCCAGCTTTGGCTCTGGCTTCTTCACCTGTTTCTCTCTGTGCTTCACCTGGGCGCGATCGGGAAACCCATACCCACGACACTTGACGGGCCTTTCACCCCCGTCACGGTTCCGTTAGATGACACAATCCGAGGACAGGCTTCGGACTTGCCAGCAGACGATCCTCGCCTGCAGAGACCCGTCACTGAGATTTCCCCTGAGCAGATTTCTGTCTCGCTATCGACTCCCGATTCTATTTGGGTTTCCTGGATTACAGGAGAGTTTCAAGTGGGCGACAATATACGGCCCCGGAATGCGTCCAGTGTGGCCAGCATGGTTAATTATGGGCTTTTGCAAGACAATCTGAACTATGAAGCCACCGGGTATTCGTTAGTTTACAGCCAACTCTATCCCTTCGTAGGCCTCCAGAATTATACATCCGGGATTATCCATCATGTTCGCCTTACAGGGTTGCGGCCGAGCACGGTATACTATTACAGATGCGGAGATCCCCATCAGAATGCAATGAGTAAAGTCCTGAGCTTCAAGACCATGCCGGCTCCGGGTTCTTCGCGGTTTCCTGAGAGAATCGCCATTGTTGGAGACCTTGGTCTGACTTACAATACGACATCTACCATTGATCACGTTCGTAGTAACCATCCTGACTTGATTCTGCTTGTTGGGGATGTGAGCTATGCAAATCTTTATTTGACGAACGGGACCGGCTCGGCCTGCTATTCTTGTTCTTTTCCGGATTCTCCTATTCACGAGACCTACCAGCCTCGCTGGGATTACTGGGGAAGGTTTATGGAACCCTTGATCTCACGAGTTCCTATCATGGTTGTGGAGGGCAATCATGAAATCGAAGAGCAAGTTGGAAATAAGACATTTACAGCTTACAGTTCAAGATTTGCATTTCCAAGTCAAGAGAGTGGATCTGTTAGCACATTCTATTACTCCTTCAATGCTGGAGGCATCCATTTCATCATGCTTGGAGGATACATAGATTACAATAAAACAGGGGAACAATATAAATGGCTGGAGCATGATTTAGCAGATGTTGACAGGAGCATGACTCCTTGGCTTGTTGCTGCGTGGCACCCACCCTGGTACAGCAGTTATAAAGCCCATTATCGTGAGGCTGAATGCATGAAACAGGAAATGGAGGAGCTGCTGTACAGATATGGTGTTGATGTTGTATTCAACGGCCATGTCCATGCATACGAGAGATCAAACCGAGTCTTTAACTACACATTGGACCCATGTGCTCCTGTTTACATTACAGTGGGGGATGGTGGTAACAGAGAAAAGATGGCAATACCACATGCTGATGAACCTGGTAACTGTCCTGATCCGGCTTCCACACCTGACAGCTATATGGGTGGATTCTGTGCATACAACTTTACATCTGGTCCAGCAGCTGGAAAGTTTTGTTGGGATAGGCAGCCTGACTTTAGCGCATATAGAGAGAGCAGCTTTGGGCATGGAATTTTTGAGGCGAAGAATGAAACATATGCTCTGTGGTCCTGGCATCGGAATCAGGATGCGTATAACAGTATAGGGGATGAGATCTATATTGTGAGGCAACCAGGAATCTGCCCAAATCAGCCGAAGATCGTTCAAACAGTTCAAAGTCCAAAAACTCAGAAGTTATGA___ACTAGTAACCACATTCATCCGGGAAAAATTAAAACCCTGAATGGATTGCTTTCAGGTCACGGGGAAGAGGCACCAGCTTTGACTTCCTCTTAATGCCCATTTGAGGAATTGAGTTTGTCATTGAGGGCATGCATAATAGTATGTATTTTAGGAAATATGCTCCTTGTTCATTATTTGATATATTTCACCAAGGGCACATTGCCATTAATATGCATTAATTTTGCCATTTATATAAAAATTCGATGGCATTTCAATCCTAAATATTTTGACCTGTGTGGATCTCCTGAAGCATCGAATTGTGTTTCAGCCTCAAGTGGAGAAAAAGGTTCCCAAGCCATGGTAAAAATGTGAGGAAAAATAACAGCAAATTCTTCCTCCAGAGGAGGTAGAAAATAATGATTAAATCAACTCCAGTTGGAAAGAATGCACAGGTTCAGTTTGCATCCTCTTCTTTGACCCCTATCTTGGATTCCCAGTTTGCGGGGATTCATGGGAAGATAAATAAAAGATAAAATCGTATCTTTTGGTTGTGAACTCCACAGGGAAAGAATTGGCAGGTTCAGTTTGTGCCGTCTCCCTCATCCCCAATATTGGATTCCCAATTTTTGTTTGCAGGGGCTCATGGATTGCCTATTTTTGTTTGGTGATGTCTATACGTTTCAGAGATTTTTGTTTGGTG

Fln Alignment:

Contig5313___QRPVTEISPEQISVSLSTPDSIWVSWITGEFQVGDNIRPRNASSVASMVNYGLLQDNLNYEATGYSLVYSQLYPFVGLQNYTSGIIHHVRLTGLRPSTVYYYRCGDPHQNAMSKVLSFKTMPAPGSSRFPERIAIVGDLGLTYNTTSTIDHVRSNHPDLILLVGDVSYANLYLTNGTGSACYSCSFPDSPIHETYQPRWDYWGRFMEPLISRVPIMVVEGNHEIEEQ--VGNKTFTAYSSRFAFPSQESGSVSTFYYSFNAGGIHFIMLGGYIDYNKTGEQYKWLEHDLADVDRSMTPWLVAAWHPPWYSSYKAHYREAECMKQEMEELLYRYGVDVVFNGHVHAYERSNRVFNYTLDPCAPVYITVGDGGNREKMAIPHADEPGNCPDPASTPDSYMGGFCAYNFTSGPAAGKFCWDRQPDFSAYRESSFGHGIFEAKNETYALWSWHRNQDAYNSIGDEIYI
D5AA01______________QKPNSDTDPQQVHVSLIGENQMRITWIT------------NDANVPSVVEYGTSPGVYNFSAKGENTSYTYL-------GYRSGQIHYVTLGPLEANTIYYYRCG-----TYGPEYSVKTP----RSEFPITFAIVGDLGQTGRTNSTLQHIQQANYDVFLLPGDLSYA-----------------------DTQQPLWDSFGMLVQPLASTRPWMVTEGDHEIERIPIVITTEFIAYNARWRMPFEESGSSSNLYYSFEVAGVHIVMLGSYAEYKQNSDQYEWLQADLSRVNKTRTPWIIVLFHVPWYNSNAAHQGEGNDMRAAMEPLLYAAKVDIAFAGHVHAYERFSRVYMNTVNPCGAVHITIGDGGNSQGL------------------DSDF------------------LDSQPQWSLFREASFGHGELTIYNATHAHWSWHRNDDDASTMADENWI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1374	10		90		0.90298
1616	90		10		0.90298
1705	90		10		0.90298
1898		14		85	0.993533
1901	87		12		0.992554
1902			12	87	0.992554
1903			12	87	0.992554
2117			85	14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain