SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5312

Length: 1758 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5312

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6H7_PHYPA	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Double-stranded RNA binding protein	-	-	1.046e-16	-

Source	Gene names
Sma3	At2g28380; At3g26932; At3g62800; At5g41070; At5g41070/MEE6_14; DRB1501; DRB1502; DRB1503; DRB1504; DRB4*; GSVIVT00019816001; GSVIVT00024541001; GSVIVT00031077001; GSVIVT00037908001; LOC_Os10g33970; MA4_106O17.54; OSJNBa0093B11.1; Os05g0150400; Os10g048050

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Uncharacterised protein family UPF0406	IPR019146	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28380.1	DRB2 dsRNA-binding protein 2 chr2:12134098-12135915 REVERSE LENGTH=434	71%
RefSeq	Arabidopsis thaliana	NP_565672.1	dsRNA-binding protein 2 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002328379.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM70

Fln msg: your sequence is longer than subject: 446 - 388

Fln protein: MYKNQLQELAQRSCFNLPSYFCIREGPDHAPRFKAVVTFNGETFESPKFYTTLRQAEHAAAEVALSTLSRRGPSQSLAARILDETGVCKNLLQEMAQRAGVPLPIYTTTRSGPGHMPVFTCSVEVAGMTFQGEAAKSKKQAEKNAAMVAWSSLKQLGSQSGSTSRSSENEGSDEQEQAVIARILATKHREEKGASVSHGKVQRLSSNANKSRVNPLWDGSAQPIGDMIAPYNARGWVAFEFNGDAAQTQRFLGTQHSNPSRCRPYYPPFVSHDGQTSLAGCGQSLEIIPSNRVISSNSRQLVPVQLSGTHLISQNRQEVSIPLDEHQRDEEEWFRSPGSSLAVRPGTVGTGMPFRAASTNTLYNLTGWSHPAQWLNMHPAPTVITRPYGLGAPVSLAPPVRVRSAVAVSSAPPRASRHEEHRNESADEQAGPHQVLNEMSSLKLE*

Protein Length: 447

Fln nts: ATGGGAGGGAAACCCTTCACTCATATACATTAGGTAATGAGCAGAGTTTCACACGTTCCTTTGGTTTCTATTTGTTATTTCCCACAGCGGCATAAGAGTAAGGAAGTCAGTCTGATGCATCTTTCCTGCATCTTTCCTCCTGGCAGGATTGGCATTTACCGTGTTTTGTCTGGATCTTTTTCTCGTTTTCTGCGAAACCCAAATTCTCAAGAACCCAAATTATCGTTATGTACCAGAGAACAATACCATGTCTGAATCACGATTTTTTGTCACGGGTATAGAAGGAAGAAGATGTTACGGCCCAAATTATCGTATTGAGAAGGATTGCAGCATTTGCAGCGTATAGTC_-_ATGTACAAGAACCAGCTGCAGGAGCTTGCTCAGAGGAGCTGTTTCAATCTGCCTTCGTATTTTTGCATACGGGAGGGGCCCGATCACGCCCCTCGTTTCAAGGCAGTAGTCACATTCAATGGCGAAACTTTCGAAAGCCCCAAATTTTATACGACTTTGCGCCAGGCCGAGCACGCGGCTGCGGAAGTTGCTCTCAGTACTCTCTCGAGAAGAGGTCCCTCGCAGTCTCTTGCTGCAAGAATCCTAGACGAAACTGGAGTGTGCAAAAATCTATTACAAGAGATGGCCCAAAGGGCTGGTGTACCGTTACCAATATATACAACAACGAGGTCAGGACCGGGACATATGCCAGTGTTTACGTGTTCTGTGGAAGTTGCGGGGATGACCTTTCAAGGTGAAGCTGCAAAGTCAAAGAAGCAGGCTGAAAAGAATGCTGCAATGGTGGCTTGGTCATCCTTAAAGCAACTTGGAAGTCAGTCTGGTTCAACATCACGAAGCTCTGAAAATGAAGGAAGTGATGAACAAGAGCAAGCTGTTATAGCTCGTATTTTAGCAACTAAGCACAGAGAAGAGAAGGGTGCATCTGTTTCTCATGGCAAAGTGCAGAGACTTTCATCAAATGCAAATAAAAGCAGAGTTAACCCCCTTTGGGATGGTTCAGCACAGCCCATTGGTGACATGATTGCACCTTATAATGCTAGAGGATGGGTTGCATTCGAATTCAATGGTGATGCAGCACAGACTCAAAGATTTCTTGGTACTCAACATAGTAATCCTTCAAGATGTAGGCCATATTACCCGCCATTTGTTTCACATGATGGGCAGACTTCACTTGCTGGCTGTGGACAATCACTTGAGATTATACCCTCAAACAGGGTAATTTCCAGCAACTCAAGACAGTTGGTTCCTGTACAGCTTAGTGGCACTCATTTGATTTCTCAGAACAGACAAGAGGTCAGCATTCCACTGGATGAGCACCAGAGGGACGAAGAGGAATGGTTTAGAAGCCCAGGATCAAGTTTGGCTGTACGACCTGGAACCGTTGGAACTGGCATGCCATTTAGGGCTGCTTCAACAAATACTTTGTACAATCTTACAGGTTGGTCTCACCCAGCGCAATGGTTGAACATGCATCCAGCACCTACTGTGATTACGCGTCCTTATGGGTTGGGTGCACCTGTCTCTTTAGCACCTCCTGTTAGAGTTCGTTCTGCAGTTGCTGTCAGTTCGGCACCACCACGTGCATCTAGACATGAGGAACATCGAAATGAGTCAGCTGACGAACAGGCTGGACCACACCAAGTTTTAAATGAGATGAGCTCTTTGAAATTGGAGTAG___TACTCACAATTGTCGATTTGACTATTGAGCTTTCTTGATTGTTCCGTGGAGTTTCTTTGGAATAGCGGGGCT

Fln Alignment:

Contig5312___MYKNQLQELAQRSCFNLPSYFCIREGPDHAPRFKAVVTFNGETFESPKFYTTLRQAEHAAAEVALSTLSRRGPSQSLAARILDETGVCKNLLQEMAQRAGVPLPIYTTTRSGPGHMPVFTCSVEVAGMTFQGEAAKSKKQAEKNAAMVAW
B8LM70______________MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVAAEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFKCIVDVFGTRFNGKPAATKKQAEQNTAMAAW

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1228	81	18			0.999994
1251	84		15		0.999986
1332		90		10	0.90298
1333		90		10	0.90298
1347	20		80		0.999996
1419	11		88		0.923564
1420	20		80		0.999996
1421	10	90			0.90298
1424		90	10		0.90298
1425			10	90	0.90298
1509		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain