SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5309

Length: 1658 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5309

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AEE79079.1\| transducin/WD40 domain-containing protein [Arabidopsis thaliana]	-	-	0.0	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Putative uncharacterized protein At2g37160	-	-	4.622e-09	-

Source	Gene names
Sma3	At2g37160; F4P12_90; GSVIVT00023184001; GSVIVT00023185001; GSVIVT00024513001; LOC_Os11g07480; LOC_Os12g07450; MtrDRAFT_AC148995g32v2; Os11g0176000; Os12g0172500; OsI_37639; OsJ_33160; OsJ_35382; PHYPADRAFT_220308; POPTRDRAFT_593695; POPTRDRAFT_739435; POP

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	-
Sma3	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	-
Sma3	ATP synthesis coupled proton transport	GO:0015986	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	-
Sma3	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G53390.1	Transducin/WD40 repeat-like superfamily protein chr3:19792781-19796428 FORWARD LENGTH=558	66%
RefSeq	Arabidopsis thaliana	NP_190907.2	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002322873.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLB6

Fln msg: Separated hits, possible frame ERROR between 257 and 259, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 185

Fln protein: CGC*GLVGAMGPAFKPSTGNKVPASPAAAAVTAHSPTVASHSPSVVSSYDGEGTYIIFNVGDTLFISDYNSRDKDPIKAIHFSSxxVQFAMPLIQMQRMIMTF*

Protein Length: 105

Fln nts: AATGTGGATGCTAGGGTTTGGTGGGAGCAATGGGACCAGCTTTTAAACCTAGTACAGGAAATAAAGTCCCAGCCTCTCCAGCTGCTGCTGCCGTTACGGCACATAGTCCCACTGTTGCAAGCCATTCACCTTCTGTTGTTTCGAGCTATGACGGAGAAGGGACTTACATCATTTTCAATGTTGGAGACACCCTTTTTATCAGTGATTATAATTCTCGTGATAAGGATCCTATCAAAGCAATTCATTTCAGTAGTTCxxxAGTCCAATTTGCCATGCCTTTGATTCAGATGCAAAGGATGATCATGACCTTTTGATTGGCCTGAACTCTGGAGATGTATATTCAGTGTCATTGAGGCAGCAGTTACAGGATCCTGGAAAGAAGCTTGTAGGGGCCCACCACTACAATAAAGATGGCTCCTTGAACAGCAGCCGTTGTACCGCTATTGCCTGGGTGCCTGGAGGAGATGGCTTTTCCTGGCTGCACATGCAGATGGTAATTTATATTTTTATCACAAGAATAAAGATGGAACTATTGATGCAACTTTACCAATAATAAAGGATCAGACCCAATTTTCCGTGACACATGCAAAGTCTAGTAAGAGCAACCCTATTGCAAGGTGGCATGTCTGCCAATGTCCCATCAACAGTATTTCTTTCTCTGCTGATGGCCAGTTTTTGGCAACTGTTGGAAGGGATGGTCATTTAAGAATATTTGATTTTGGAAAGGAGCAATTGATTTGTGGTGGTAAAAGCTATTATGGTGCTCTACTATGTTGTGCTTGGAGTCCTGATGGGAAGTATGTCTTGGCTGGAGGAGAAGATGACCTAGTACAGGTGTGGAGTATGGAAGACCGTGCTGTGGTGGCTTGGGGTGAGGGTCACAACTCTTGGGTCAGTGCTGTTGTATTTGATTCATGCTGGACCCTACCTTGTTCTGATGGCGCAGAAGAAAGCACCATGTACCGGTTTGGATCAGTTGGGCAGGATACTCAATTACTTCTATGGGATTTGGTGATGGATGAAATTGTAGTGCCTGTGCGAAGGTGTGCTCCAGGTGGCTCTCCTACATACAGTACGAGCAGCCAATCTTCCTGCATGGAGAATGTTAATTCTGTTGGTCTTCTTCAATCTGCTCCAAGTAGGAGAGATGTTCCAAAACTCTCCCCTGTAGTGGCTCACAGAGTACATGCAGAACCTCTTTCTGGCCTTATTTTTGCAAAGGATTCGATTATCACATGTAGTCATGAGGGACATTTGAAGATCTGGACTAGACCTTGCCGTACAAACAGCCCTGCAGGCAATTCAGTTGTCCCACTCGAATCTTTGAATAATAATGAGTGAAGTAGCAAAGCTGAGATTTAAACATAAGAGGAATTATCGACAATGTTGTTGTCCAGCTCAAAGATGAAAATGTTCATTACAAGCGTGTACTGCGAAAATCTTATGGCAAAATCAGTTTGCAAGTGTATTGTCTTAAAGAAATGACATCTGTGAAATGGTGGTTATTAGTGCCTTTGCTTCTGATGTATGAAGGCCTAATTACCGTGTTTTAACGTTGGCCATCATACTGGTAGCATCCTTGTATGCGCTAAATAGGATAACACTGCCAGCATTGTTGGGGCTTTTGTATTTGGAGGGTGATTTATTTGTGTTGAGTTAG

Fln Alignment:

Contig5309___GLVGAMGPAFKPSTGNKXXXXXXXXXXXXXXXXXXXHSPSVVSSYDGEGTYIIFNVGDTLFISDYNSRDKDPIKAIHFSSSxVQFAMPLIQMQRMIMTF
B8LLB6______________GFGGSNGTS-KPSAGNKVPASPATAAVTTHSPTVASHAPSVVSSYDGEGTYVIFNVGDTLFISDYNSRDKDPIKAIHFSSSxIQFAMPLIQMQRTTTTF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
618	10		90		0.90298
1212	12			87	0.992554
1239			12	87	0.992554
1262		14		85	0.993533
1263	14	85			0.993533
1265			85	14	0.993533
1268		85	14		0.993533
1269			14	85	0.993533
1270	85		14		0.993533
1525		12		87	0.992554
1526	12		87		0.992554
1544		75		25	1.0
1545	27		72		1.0
1555	28		71		1.0
1564		71		28	1.0
1567	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain